Characterisation and interpopulation variability of a complex HpaI satellite DNA of Drosophila seriema (repleta group)

Genetica

Volumn 121, Issue 3, 2004, Pages 241-249

  Kuhn, Gustavo C S ^a   Sene, Fabio M ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

buzzatii cluster; concerted evolution; DNA rearrangements; Drosophila seriema; Espinha o Range; isolated populations; repetitive DNA; satellite DNA

Indexed keywords

ENDODEOXYRIBONUCLEASE HPAI; SATELLITE DNA; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ANIMAL; ARTICLE; BRAZIL; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA BASE COMPOSITION; DNA SEQUENCE; DROSOPHILA; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE;

ANIMALS; BASE COMPOSITION; BASE SEQUENCE; BRAZIL; CLONING, MOLECULAR; CLUSTER ANALYSIS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, SATELLITE; DROSOPHILA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GEOGRAPHY; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; VARIATION (GENETICS);

CACTACEAE; DROSOPHILA SERIEMA; REPLETA GROUP; TRANSPOSONS;

EID: 4444253822     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:GENE.0000039850.90335.31     Document Type: Article

References (43)

1. Ab' Saber, N.A., 1977. Espaços ocupados pela expansão dos climas secos da América do Sul, por ocasião dos períodos glaciais quaternários. Paleoclimas 3: 1-19.
2. Avise, J.C., 1994. Molecular Markers, Natural History and Evolution. Chapman & Hall, New York.
3. Bachmann, L. & D. Sperlich, 1993. Gradual evolution of a specific satellite DNA family in Drosophila ambigua, D.tristis and D.obscura. Mol. Biol. Evol. 10: 647-659.
4. Bachmann, L., M. Raab & D. Sperlich, 1989. Satellite DNA and speciation: A species specific satellite DNA of Drosophila guanche. J. Zool. Syst. Evol. Res. 27: 84-93.
5. Bachmann, L., F. Venazetti & V. Sbordoni, 1994. Characterization of a species-specific satellite DNA of Dolichopoda schiavazzi (Orthoptera, Rhaphidophoridae) cave crickets. J. Mol. Evol. 39: 274-281.
6. Bachmann, L., F. Venazetti & V. Sbordoni, 1996. Tandemly repeated satellite DNA of Dolichopoda schiavazzi: a test for models on the evolution of highly repetitive DNA. J. Mol. Evol. 43: 135-144.
7. Bachmann, L., J. Tomiuk, J. Adis & K. Vohland, 1998. Genetic differentiation of the millipede Pycnptropis epiclysmus inhabiting seasonally inundated and non-flooded Amazonian forests. J. Zool. Syst. Evol. Res. 36: 65-70.
8. Baimai, V., F.M. Sene & M.A.Q.R. Pereira, 1983. Heterochromatin and karyotypic differentiation of some neotropical cactus-breeding species of the Drosophila repleta group. Genetica 67: 81-92.
9. Beridze, T.G., 1986. Satellite DNA. Springer, Berlin, Heidelberg and New York.
10. Bruvo, B., M. Plohl & D. Ugarkovic, 1995. Uniform distribution of satellite DNA variants on the chromosomes of tenebrionid species Alphitobius diaperinus and Tenebrio molitor. Hereditas 123: 69-75.
11. de Brito, R.A., M.H. Manfrin & F.M. Sene, 2002. Nested cladistic analysis of Brazilian populations of Drosophila serido. Mol. Phyl. Evol. 22: 131-143.
12. de la Herrán, R., F. Fontana, M. Lanfredi, L. Congiu, M. Leis, R. Rossi, C.R. Rejón, M.R. Rejón & M.A. Garrido-Ramos, 2001. Slow rates of evolution and sequence homogenisation in an ancient satellite DNA family of sturgeons. Mol. Biol. Evol. 18(1): 432-436.
13. Dover, G.A., 1982. Molecular drive: a cohesive mode of species evolution. Nature 199: 111-117.
14. Dover, G.A., 1986. Molecular drive in multigene families: how biological novelties arise, spread and are assimilated. Trends Genet. 2: 159-165.
15. Elder, F.J. & B.J. Turner, 1994. Concerted evolution at the population level: pupfish HindIII satellite DNA sequences. Proc. Natl. Acad. Sci. 91: 994-998.
16. Fernández, R., M.J.L. Barragán, M. Bullejos, J.A. Marchal, S. Martínez, R.D. de la Guardia & A. Sánchez, 2001. Molecular and cytogenetic characterization of highly repeated DNA sequences in the vole Microtus cabrerae. Heredity 87: 637-646.
17. Fitzgerald, D.J., G.L. Dryden, E.C. Bronson, J.S. Williams & J.N. Anderson, 1994. Conserved patterns of bending in satellite and nucleosome positioning DNA. J. Biochem. Chem. 269(33): 21303-21314.
18. Garrido-Ramos, M.A., E. de la Herrán, M. Jamilena, R. Lozano, C.R. Rejón & M.R. Rejón, 1999. Evolution of centromeric satellite DNA and its use in phylogenetic studies of the Sparidae family (Pisces, Perciformes). Mol. Phyl. Evol. 12: 200-204.
19. Giulieti, A.M., N.L. Menezes, J.R. Pirani, M. Seguro & M.G.L. Wanderley, 1987. Flora da Serra do Cipó. Minas Gerais: caracterização e lista de espécies. Bol. Bot. 9: 1-151.
20. Heikkinen, E., V. Launonen, E. Müller & L. Bachmann, 1995. The pvB370 BamHI satellite DNA family of the Drosophila virilis group and its evolutionary relation to mobile dispersed genetic elements. J. Mol. Evol. 41: 604-614.
21. Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Biol. 16: 111-120.
22. Kuhn, G.C.S., A. Ruiz, M.A.R. Alves & F.M. Sene, 1996. The metaphase and polytene chromosomes of Drosophila seriema (repleta group; mulleri subgroup). Brazil. J. Genet. 19(2): 209-216.
23. Kuhn, G.C.S., S. Bollgönn, D. Sperlich & L. Bachmann, 1999. Characterization of a species-specific satellite DNA of Drosophila buzzatii. J. Zool. Syst. Evol. Res. 37: 109-112.
24. Kuhn, G.C.S., F.F. Franco, W.A. Silva Jr., N.M. Martinez-Rossi & F.M. Sene, 2003. On the pBuM189 satellite DNA variability among South American populations of Drosophila buzzatii. Hereditas 139: 161-166.
25. Kumar, S., K. Tamura, I.B. Jakobsen & M. Nei, 2001. MEGA2: molecular evolutionary genetics analysis software, Arizona State University, Tempe, Arizona, USA.
26. Lohe, A.R., A.J. Hilliker & P.A. Roberts, 1993. Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134: 1149-1174.
27. Lorite, P., J.A. Carrillo, I. Garnería, E. Petitpierre & T. Palomeque, 2002. Satellite DNA in the elm leaf beetle, Xanthogaleruca luteola (Coleoptera, Chrysomelidae): characterization, interpopulation analysis, and chromosome location. Cytogenet. Genome Res. 98: 302-307.
28. Manfrin, M.H., R.O.A. de Brito & F.M. Sene, 2001. Systematics and evolution of the Drosophila buzzatii (Diptera: Drosophilidae) cluster using mtDNA. Ann. Entomol. Soc. Am. 94(3): 333-346.
29. Mravinac, B., M. Plohl, N. Mestrovic & D. Ugarkovic, 2002. Sequence of PRAT satellite DNA 'frozen' in some Coleopteran species. J. Mol. Evol. 54: 774-783.
30. Okumura, K., R. Kiyama & M. Oishi, 1987. Sequence analyses of extrachromosomal Sau3A and related family DNA: analysis of recombination in the excision event. Nucleic Acids Res. 15: 7477-7489.
31. Petitpierre, E., 1996. Molecular cytogenetics and taxonomy of insects, with particular reference to the coleoptera. Int. J. Insect Morphol. Embryol. 25(1/2): 115-133.
32. Pons, J., B. Bruvo, C. Juan, E. Petitpierre, M. Plohl & D. Ugarkovic, 1997. Conservation of satellite DNA in species of the genus Pimelia (Tenebrionidae, Coleoptera). Gene 205: 183-190.
33. Renault, S., F. Rouleux-Bonnin, G. Periquet & Y. Bigot, 1999. Satellite DNA transcription in Diadromus pulchellus (Hymenoptera). Insect Biochem Mol. Biol. 29: 103-111.
34. Ruiz, A., A.M. Cansian, G.C.S. Kuhn, M.A.R. Alves & F.M. Sene, 2000. The Drosophila serido speciation puzzle: putting new pieces together. Genetica 108: 217-227.
35. Saitou, N. & M. Nei, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-125.
36. Southern, E.M., 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98: 503-517.
37. Strachan, T., D. Webb & G. Dover, 1985. Transition stages of molecular drive in multiple-copy DNA families in Drosophila. EMBO J. 4: 1701-1708.
38. Thompson J.D., D.G. Higgins & T.J. Gibson, 1994. CLUSTALW: improving the sensitivity of progressive sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
39. Tidon-Sklorz, R. & F.M. Sene, 1995a. Drosophila seriema n.sp.: a new member of the D. serido (Diptera, Drosophilidae) superspecies Taxon. Ann. Entomol. Soc. Am. 88(2): 139-142.
40. Tidon-Sklorz, R. & F.M. Sene, 1995b. Fauna of Drosophila (Diptera, Drosophilidae) in the northern area of the 'Cadeia do Espinhaço', states of Minas Gerais and Bahia, Brazil: biogeographical and ecological aspects. Iheringia Ser. Zool. 78: 85-94.
41. Ugarkovic, D. & M. Plohl, 2002. Variation in satellite DNA profiles - causes and effects. EMBO J. 21(22): 5955-5959.
42. Vicente, V.E., L.A.C. Bertollo, S.R. Valentini & O. Moreira, 2003. Origin and differentiation of a sex chromosome system in Paradon hilarii (Pisces, Paradontidae). Satellite DNA, G- and C-banding. Genetica 119(2): 115-120.
43. Wu, W.L., J.P. Wang, M.C. Tseng & T.Y. Chiang, 1999. Cloning and genetic variability of a HindIII repetitive DNA in Acrossocheilus paradoxus (Cyprinidae). Genome 42: 780-788.