-
1
-
-
0032215320
-
Databases in protein crystallography
-
G.J. Kleywegt, and T.A. Jones Databases in protein crystallography Acta Crystallogr. D 54 1998 1119 1131
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 1119-1131
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
2
-
-
0242432554
-
An automatic method to generate force-field parameters for hetero-compounds
-
K. Nilsson, D. Lecerof, E. Sigfridsson, and U. Ryde An automatic method to generate force-field parameters for hetero-compounds Acta Crystallogr. D 59 2003 274 289
-
(2003)
Acta Crystallogr. D
, vol.59
, pp. 274-289
-
-
Nilsson, K.1
Lecerof, D.2
Sigfridsson, E.3
Ryde, U.4
-
3
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
R.A. Engh, and R. Huber Accurate bond and angle parameters for X-ray protein structure refinement Acta Crystallogr. A 47 1991 392 400
-
(1991)
Acta Crystallogr. a
, vol.47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
4
-
-
0033106268
-
Remarks about protein structure precision
-
D.W.J. Cruickshank Remarks about protein structure precision Acta Crystallogr. D 55 1999 583 601
-
(1999)
Acta Crystallogr. D
, vol.55
, pp. 583-601
-
-
Cruickshank, D.W.J.1
-
5
-
-
0027995833
-
Accuracy and precision in protein crystal structure analysis: Two independent refinements of the structure of poplar plastocyanin at 173 K
-
B.A. Fields, H.H. Bartsch, H.D. Bartunik, F. Cordes, J.M. Guss, and H.C. Freeman Accuracy and precision in protein crystal structure analysis: two independent refinements of the structure of poplar plastocyanin at 173 K Acta Crystallogr. D 50 1994 709 730
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 709-730
-
-
Fields, B.A.1
Bartsch, H.H.2
Bartunik, H.D.3
Cordes, F.4
Guss, J.M.5
Freeman, H.C.6
-
7
-
-
0035859440
-
A comparison of the inner-sphere reorganisation energies of cytochromes, ironâ€"sulphur clusters, and blue copper proteins
-
E. Sigfridsson, M.H.M. Olsson, and U. Ryde A comparison of the inner-sphere reorganisation energies of cytochromes, ironâ€" sulphur clusters, and blue copper proteins J. Phys. Chem. B 105 2001 5546 5552
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 5546-5552
-
-
Sigfridsson, E.1
Olsson, M.H.M.2
Ryde, U.3
-
9
-
-
0344012221
-
Quantum chemistry can improve protein crystal structures locally
-
U. Ryde, and K. Nilsson Quantum chemistry can improve protein crystal structures locally J. Am. Chem. Soc. 125 2003 14232 14233
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14232-14233
-
-
Ryde, U.1
Nilsson, K.2
-
10
-
-
0036667496
-
Quantum chemical geometry optimisations in proteins using crystallographic raw data
-
U. Ryde, L. Olsen, and K. Nilsson Quantum chemical geometry optimisations in proteins using crystallographic raw data J. Comput. Chem. 23 2002 1058 1070
-
(2002)
J. Comput. Chem.
, vol.23
, pp. 1058-1070
-
-
Ryde, U.1
Olsen, L.2
Nilsson, K.3
-
11
-
-
0023071444
-
Liver alcohol dehydrogenase
-
G. Pettersson Liver alcohol dehydrogenase CRC Crit. Rev. Biochem. 21 1987 349 389
-
(1987)
CRC Crit. Rev. Biochem.
, vol.21
, pp. 349-389
-
-
Pettersson, G.1
-
12
-
-
0345227309
-
Quantum refinement â€" a combination of quantum chemistry and protein crystallography
-
U. Ryde, and K. Nilsson Quantum refinement â€" a combination of quantum chemistry and protein crystallography J. Mol. Struct. (Theochem) 632 2003 259 275
-
(2003)
J. Mol. Struct. (Theochem)
, vol.632
, pp. 259-275
-
-
Ryde, U.1
Nilsson, K.2
-
13
-
-
0000649842
-
Improved structure refinement through maximum likelihood
-
N.S. Pannu, and R.J. Read Improved structure refinement through maximum likelihood Acta Crystallogr. A 52 1996 659 668
-
(1996)
Acta Crystallogr. a
, vol.52
, pp. 659-668
-
-
Pannu, N.S.1
Read, R.J.2
-
14
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
P.D. Adams, N.S. Pannu, R.J. Read, and A.T. Brunger Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement Proc. Natl. Acad. Sci. 94 1997 5018 5023
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
15
-
-
0030864522
-
Crystallographic refinement by simulated annealing: Methods and applications
-
A.T. Brünger Crystallographic refinement by simulated annealing: methods and applications Meth. Enzym. 277 1997 243 269
-
(1997)
Meth. Enzym.
, vol.277
, pp. 243-269
-
-
Brünger, A.T.1
-
16
-
-
0003845334
-
-
Universität Karlsruhe Germany
-
R. Ahlrichs, M. Bär, H.-P. Baron, R. Bauernschmitt, S. Böcker, M. Ehrig, K. Eichkorn, S. Elliott, F. Haase, M. Häser, H. Horn, C. Huber, C. Kölmel, M. Kollwitz, C. Ochsenfeld, H. Öhm, A. Schäfer, U. Schneider, O. Treutler, M. von Arnim, F. Weigend, P. Weis, and H. Weiss TURBOMOLE Version 5.6 2000 Universität Karlsruhe Germany
-
(2000)
TURBOMOLE Version 5.6
-
-
Ahlrichs, R.1
Bär, M.2
Baron, H.-P.3
Bauernschmitt, R.4
Böcker, S.5
Ehrig, M.6
Eichkorn, K.7
Elliott, S.8
Haase, F.9
Häser, M.10
Horn, H.11
Huber, C.12
Kölmel, C.13
Kollwitz, M.14
Ochsenfeld, C.15
Öhm, H.16
Schäfer, A.17
Schneider, U.18
Treutler, O.19
Von Arnim, M.20
Weigend, F.21
Weis, P.22
Weiss, H.23
more..
-
17
-
-
0003834618
-
-
Yale University
-
A.T. Brunger, P.D. Adams, G.M. Clore, W.L. Delano, P. Gros, R.W. GrosseKunstleve, J.-S. Jiang, J. Kuszewski, M. Niges, N.S. Pannu, R.J. Read, L.M. Rice, T. Simonson, and G.L. Warren Crystallography & NMR System CNS, Version 1.1 2000 Yale University
-
(2000)
Crystallography & NMR System CNS, Version 1.1
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grossekunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Niges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
18
-
-
0032711930
-
Combined quantum mechanical/molecular mechanical methodologies applied to biomolecular systems
-
G. Monard, and K.M. Merz Combined quantum mechanical/molecular mechanical methodologies applied to biomolecular systems Acc. Chem. Res. 32 1999 904 911
-
(1999)
Acc. Chem. Res.
, vol.32
, pp. 904-911
-
-
Monard, G.1
Merz, K.M.2
-
20
-
-
0037304303
-
Combined quantum and molecular mechanics calculations on metalloproteins
-
U. Ryde Combined quantum and molecular mechanics calculations on metalloproteins Curr. Opin. Chem. Biol. 7 2003 136 142
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 136-142
-
-
Ryde, U.1
-
21
-
-
0035625887
-
Quantum mechanical/molecular mechanical methods and the study of kinetic isotope effects: Modelling the covalent junction region and application to the enzyme xylose isomerase
-
R.M. Nicoll, S.A. Hindle, G. MacKenzie, I.H. Hillier, and N.A. Burton Quantum mechanical/molecular mechanical methods and the study of kinetic isotope effects: modelling the covalent junction region and application to the enzyme xylose isomerase Theor. Chim. Acta 106 2001 105 112
-
(2001)
Theor. Chim. Acta
, vol.106
, pp. 105-112
-
-
Nicoll, R.M.1
Hindle, S.A.2
MacKenzie, G.3
Hillier, I.H.4
Burton, N.A.5
-
22
-
-
0033787581
-
Crystal structure of oxidized Bacillus pasteurii cytochrome at 0.97-Å resolution
-
S. Benini, A. González, W.R. Rypniewski, K.S. Wilson, J.J. Van Beeumen, and S. Ciurli Crystal structure of oxidized Bacillus pasteurii cytochrome at 0.97-Å resolution Biochemistry 39 2000 13115 13126
-
(2000)
Biochemistry
, vol.39
, pp. 13115-13126
-
-
Benini, S.1
González, A.2
Rypniewski, W.R.3
Wilson, K.S.4
Van Beeumen, J.J.5
Ciurli, S.6
-
23
-
-
0030722317
-
A link between protein structure and enzyme catalyzed hydrogen tunneling
-
B.J. Bahnson, T.D. Colby, J.K. Chin, B.M. Goldstein, and J.P. Klinman A link between protein structure and enzyme catalyzed hydrogen tunneling Proc. Natl. Acad. Sci. 94 2000 12797 12802
-
(2000)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 12797-12802
-
-
Bahnson, B.J.1
Colby, T.D.2
Chin, J.K.3
Goldstein, B.M.4
Klinman, J.P.5
-
24
-
-
0035940450
-
Contributions of valine-292 in the nicotinamide binding site of liver alcohol dehydrogenase and dynamics to catalysis
-
J.K. Rubach, S. Ramaswamy, and B.V. Plapp Contributions of valine-292 in the nicotinamide binding site of liver alcohol dehydrogenase and dynamics to catalysis Biochemistry 40 2001 12686 12694
-
(2001)
Biochemistry
, vol.40
, pp. 12686-12694
-
-
Rubach, J.K.1
Ramaswamy, S.2
Plapp, B.V.3
-
25
-
-
4243553426
-
Density-functional exchange-energy approximation with correct asymptotic behavior
-
A. Becke Density-functional exchange-energy approximation with correct asymptotic behavior Phys. Rev. A 38 1988 3098 3100
-
(1988)
Phys. Rev. a
, vol.38
, pp. 3098-3100
-
-
Becke, A.1
-
26
-
-
5944261746
-
Density-functional approximation for the correlation energy of the inhomogeneous electron gas
-
J.P. Perdew Density-functional approximation for the correlation energy of the inhomogeneous electron gas Phys. Rev. B 33 1986 8822 8824
-
(1986)
Phys. Rev. B
, vol.33
, pp. 8822-8824
-
-
Perdew, J.P.1
-
27
-
-
22944484208
-
-
K. Eichkorn, O. Treutler, H. Öhm, M. Häser, and R. Ahlrichs Chem. Phys. Lett. 240 1995 283 290
-
(1995)
Chem. Phys. Lett.
, vol.240
, pp. 283-290
-
-
Eichkorn, K.1
Treutler, O.2
Öhm, H.3
Häser, M.4
Ahlrichs, R.5
-
29
-
-
26344435738
-
Fully optimized contracted gaussian basis set for atoms Li to Kr
-
A. Schäfer, H. Horn, and R. Ahlrichs Fully optimized contracted gaussian basis set for atoms Li to Kr J. Chem. Phys. 97 1992 2571 2577
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 2571-2577
-
-
Schäfer, A.1
Horn, H.2
Ahlrichs, R.3
-
33
-
-
0023178453
-
+ on ionizing groups in liver alcohol dehydrogenase
-
+ on ionizing groups in liver alcohol dehydrogenase Eur. J. Biochem. 165 1987 157 161
-
(1987)
Eur. J. Biochem.
, vol.165
, pp. 157-161
-
-
Pettersson, G.1
Eklund, H.2
-
34
-
-
0023779259
-
Calculation of the total electrostatic energy of a macromolecular system: Solvation energies, binding energies, and conformational analysis
-
M.K. Gilson, and B. Honig Calculation of the total electrostatic energy of a macromolecular system: solvation energies, binding energies, and conformational analysis Proteins: Struc. Funct. Genet. 4 1988 7 18
-
(1988)
Proteins: Struc. Funct. Genet.
, vol.4
, pp. 7-18
-
-
Gilson, M.K.1
Honig, B.2
-
36
-
-
0000339209
-
Electrostatic effects in biological molecules
-
D. Bashford Electrostatic effects in biological molecules Curr. Opin. Struct. Biol. 1 1991 175 184
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 175-184
-
-
Bashford, D.1
-
37
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
B. Honig, and A. Nicholls Classical electrostatics in biology and chemistry Science 268 1995 1144 1149
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
38
-
-
0001272489
-
Density-functional and electrostatic calculations for a model of a manganese superoxide dismutase active site in aqueous solution
-
C.L. Fisher, J.-L. Chen, J. Li, D. Bashford, and L. Noodleman Density-functional and electrostatic calculations for a model of a manganese superoxide dismutase active site in aqueous solution J. Phys. Chem. 100 1996 13498 13505
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 13498-13505
-
-
Fisher, C.L.1
Chen, J.-L.2
Li, J.3
Bashford, D.4
Noodleman, L.5
-
40
-
-
0032870608
-
Improving macromolecular electrostatics calculations
-
J.E. Nielsen, K.V. Andersen, B. Honig, R.W.W. Hooft, G. Klebe, G. Vriend, and R.C. Wade Improving macromolecular electrostatics calculations Protein Eng. 12 1999 657 662
-
(1999)
Protein Eng.
, vol.12
, pp. 657-662
-
-
Nielsen, J.E.1
Andersen, K.V.2
Honig, B.3
Hooft, R.W.W.4
Klebe, G.5
Vriend, G.6
Wade, R.C.7
-
41
-
-
0035312551
-
Macromolecular electrostatics: Continuum models and their growing pains
-
T. Simonson Macromolecular electrostatics: continuum models and their growing pains Curr. Opin. Struct. Biol. 11 2001 243 252
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 243-252
-
-
Simonson, T.1
|