Intermediate molecules generated by transposase in the pathways of transposition of bacterial insertion element IS3

Advances in Biophysics

Volumn 38, Issue , 2004, Pages 125-139

  Ohtsubo, Eiichi ^a   Minematsu, Hiroshi ^a   Tsuchida, Ken ^a   Ohtsubo, Hisako ^a   Sekine, Yasuhiko ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSPOSASE;

AMINO ACID SEQUENCE; BASE PAIRING; DNA CLEAVAGE; DNA TRANSPOSITION; ENTEROBACTERIACEAE; ENZYME ACTIVITY; GENE DELETION; GENE DUPLICATION; GENE EXPRESSION; GENE INSERTION; GENE REARRANGEMENT; INSERTION ELEMENT IS3; INVERTED REPEAT; MOLECULAR RECOGNITION; NONHUMAN; OPEN READING FRAME; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN FUNCTION; REPLICON; REVIEW; STRUCTURE ANALYSIS;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; INSERTION SEQUENCES;

EID: 4444249311     PISSN: 0065227X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0065-227X(04)80121-7     Document Type: Article

References (56)

1. M. Fiandt, W. Szybalski, and M. H. Malamy, Mol. Gen. Genet., 119, 223 (1972).
2. H.-J. Hirsch, P. Starlinger, and P. Brachet, Mol. Gen. Genet., 119, 191 (1972).
3. M.H. Malamy, M. Fiandt, and W. Szybalski, Mol. Gen. Genet., 119, 207 (1972).
4. E. Ohtsubo and Y. Sekine, Curt: Topics Microbiol. Immunol., 204, 1 (1996).
5. J. Mahillon and M. Chandler, Microbiol. Mol. Biol. Rev., 62, 725 (1998).
6. Y. Sekine and E. Ohtsubo, Proc. Natl. Acad. Sci. USA, 86, 4609 (1989).
7. Y. Sekine and E. Ohtsubo, in "New Aspects of the Genetics of Molecular Evolution," ed.by M. Kimura and N. Takahata, Japan Sci. Soc. Press, Tokyo/Springer-Verlag, Berlin, p. 243 (1991).
8. Y. Sekine and E. Ohtsubo, Mol. Gen. Genet., 235, 325(1992).
9. Y. Sekine, H. Nagasawa, and E. Ohtsubo, Mol. Gen. Genet., 235, 317 (1992).
10. Y. Sekine, N. Eisaki, and E. Ohtsubo, J. Mol. Biol., 235, 1406 (1994).
11. Y. Sekine, K. Izumi, T. Mizuno, and E. Ohtsubo, Genes Cells, 2, 547 (1997).
12. P. Polard, M. F. Prère, M. Chandler, and O. Fayet, J. Mol. Biol., 222, 465 (1991).
13. K. Vögele, E. Schwartz, C. Welz, E. Schiltz, and B. Rak, Nucleic Acids Res., 19, 4377 (1991).
14. O. Fayet, P. Ramond, P. Polard, M. F. Prère, and M. Chandler, Mol. Microbiol., 4, 1771 (1990).
15. E. Khan, J. P. G. Mack, R. A. Katz, J. Kulkosky, and A. M. Skalka, Nucleic Acids Res., 19, 851 (1991).
16. J. Kulkosky, K. S. Jones, R. A. Katz, J. P. G. Mack, and A. M. Skalka, Mol. Cell. Biol., 12, 2331 (1992).
17. R. Rezsöhazy, B. Hallet, J. Delcour, and J. Mahillon, Mol. Microbiol., 9, 1283 (1993).
18. S. Ohta, K. Tsuchida, S. Choi, Y. Sekine, Y. Shiga, and E. Ohtsubo, J. Bacteriol., 184, 6146 (2002).
19. D. R. Davies, I. Y. Goryshin, W. S. Reznikoff, and I. Rayment, Science, 289, 77 (2000).
20. F. Dyda, A. B. Hickman, T. M. Jenkins, A. Engelman, R. Craigie, and D. R. Davies, Science, 266, 1981 (1994).
21. P. Rice and K. Mizuuchi, Cell, 82, 209 (1995).
22. G. Bujacz, M. Jaskolski, J. Alexandratos, A. Wlodawer, G. Merkel, R. A. Katz, and A. M. Skalka, J. Mol. Biol., 253, 333 (1995).
23. Z. N. Yang, T. C. Mueser, F. D. Bushman, and C. C. Hyde, J. Mol. Biol., 296, 535 (2000).
24. L. A. Kelley, R. M. MacCallum, and M. J. E. Sternberg, J. Mol. Biol., 299, 499 (2000).
25. L. Haren, P. Polard, B. Ton-Hoang, and M. Chandler, J. Mol. Biol., 283, 29 (1998).
26. A. Lupas, M. Van Dyke, and J. Stock, Science, 252, 1162 (1991).
27. Y. Sekine, K. Aihara, and E. Ohtsubo, J. Mol. Biol., 294, 21 (1999).
28. H. Minematsu, Molecular mechanism of intermediate formation of IS3 transposition. Ph.D. thesis, The University of Tokyo (2003).
29. P. Polard, M. F. Prère, O. Fayet, and M. Chandler, EMBO J., 11, 5079 (1992).
30. L.A. Lewis and N. D. F. Grindley, Mol. Microbiol., 25, 517 (1997).
31. L. A. Lewis, N. Gadura, M. Greene, R. Saby, and N. D. F. Grindley, Mol. Microbiol., 42, 887 (2001).
32. M. Haas and B. Rak, J. Bacteriol., 184, 5833 (2002).
33. B. Ton-Hoang, M. Betermier, P. Polard, and M. Chandler, EMBO J., 16, 3357 (1997).
34. G. Duval-Valentin, C. Normand, V. Khemici, B. Marty, and M. Chandler, EMBO J., 20, 5802 (2001).
35. B. Ton-Hoang, P. Polard, L. Haren, C. Turlan, and M. Chandler, Mol. Microbiol., 32, 617 (1999).
36. P. Polard and M. Chandler, Genes Dev., 9, 2846 (1995).
37. P. Polard, B. Ton-Hoang, L. Haren, M. Betermier, R. Walczak, and M. Chandler, J. Mol. Biol., 264, 68 (1996).
38. S. Iida and W. Arber, Mol. Gen. Genet., 177, 261 (1980).
39. E. Ohtsubo, M. Zenilman, and H. Ohtsubo, Proc. Natl. Acad. Sci. USA, 77, 750 (1980).
40. H. Ohtsubo, M. Zenilman, and E. Ohtsubo, J. Bacteriol., 144, 131 (1980).
41. E. Ohtsubo, M. Zenilman, H. Ohtsubo, M. McCormick, C. Machida, and Y. Machida, Cold Spring Harbor Symp. Quant. Biol., 45, 283 (1981).
42. T. A. Weinert, N. A. Schaus, and N. D. F. Grindley, Science, 222, 755 (1983).
43. F. Heffron, B. McCarthy, H. Ohtsubo, and E. Ohtsubo, Cell, 18, 1153 (1979).
44. M. McCormick, W. Wishart, H. Ohtsubo, F. Heffron, and E. Ohtsubo, Gene, 15, 103 (1981).
45. H. Bialy, B. T. Waggoner, and M. L. Pato, Mol, Gen. Genet., 180, 377 (1980).
46. G. Chaconas, R. M. Harshey, and A. I. Bukhari, Proc. Natl. Acad. Sci. USA, 77, 1778 (1980).
47. G. Chaconas, R. M. Harshey, N. Sarvetnick, A. I. Bukhari, J. Mol. Biol., 150, 341 (1981).
48. A. K. Kennedy, A. Guhathakurta, N. Kleckner, and D. B. Haniford, Cell, 95, 125 (1998).
49. A. Bhasin, I. Y. Goryshin, and W. S Reznikoff, J. Biol. Chem., 274, 37021 (1999).
50. J. Spielmann-Ryser, M. Moser, P. Kast, and H. Weber, Mol. Gen. Genet., 226, 441 (1991).
51. K. Tsuchida. Multiple transposition pathways of IS3. Ph.D. thesis, The University of Tokyo (2003).
52. T. Maekawa, K. Yanagihara, and E. Ohtsubo, Genes Cells, 1, 1007 (1996).
53. A. Arthur and D. Sherratt, Mol. Gen. Genet., 175, 267 (1979).
54. J. A. Shapiro, Proc. Natl. Acad. Sci. USA, 76, 1933 (1979).
55. G. Wang, X. Xu, J. M. Chen, D. E. Berg, and C. M. Berg, J. Bacteriol., 176, 1332 (1994).
56. C. Turlan and M. Chandler, EMBO J., 14, 5410 (1995).