-
1
-
-
0033624685
-
Fast kinetics and mechanisms in protein folding
-
Eaton, W. A., Muñoz, V., Hagen, S. J., Jas, G. S., Lapidus, L. J., Henry, E. R., and Hofrichter, J. (2000) Fast kinetics and mechanisms in protein folding. Annu. Rev. Biophys. Biomol. Struct. 29, 327-359.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 327-359
-
-
Eaton, W.A.1
Muñoz, V.2
Hagen, S.J.3
Jas, G.S.4
Lapidus, L.J.5
Henry, E.R.6
Hofrichter, J.7
-
2
-
-
0029973119
-
Direct observation of fast protein folding: The initial collapse of apomyoglobin
-
Ballew, R. M., Sabelko, J., and Gruebele, M. (1996) Direct observation of fast protein folding: The initial collapse of apomyoglobin. Proc. Natl. Acad. Sci. U.S.A. 93, 5759-5764.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 5759-5764
-
-
Ballew, R.M.1
Sabelko, J.2
Gruebele, M.3
-
3
-
-
0027131947
-
Fast events in protein folding initiated by nanosecond laser photolysis
-
Jones, C. M., Henry, E. R., Hu, Y., Chan, C.-K., Luck, S. D., Bhuyan, A., Roder, H., Hofrichter, J., and Eaton, W. A. (1993) Fast events in protein folding initiated by nanosecond laser photolysis. Proc. Natl. Acad. Sci. U.S.A. 90, 11860-11864.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A
, vol.90
, pp. 11860-11864
-
-
Jones, C.M.1
Henry, E.R.2
Hu, Y.3
Chan, C.-K.4
Luck, S.D.5
Bhuyan, A.6
Roder, H.7
Hofrichter, J.8
Eaton, W.A.9
-
4
-
-
2442565750
-
Measuring the refolding of β-sheets with different turn sequences on a nanosecond time scale
-
Chen, R. P.-Y., Huang, J. J.-T., Chen, H.-L., Jan, H., Velusamy, M., Lee, C.-T., Fann, W., Larsen, R. W., and Chan, S. I. (2004) Measuring the refolding of β-sheets with different turn sequences on a nanosecond time scale. Proc. Natl. Acad. Sci. U.S.A. 101, 7305-7310.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 7305-7310
-
-
Chen, R.P.-Y.1
Huang, J.J.-T.2
Chen, H.-L.3
Jan, H.4
Velusamy, M.5
Lee, C.-T.6
Fann, W.7
Larsen, R.W.8
Chan, S.I.9
-
5
-
-
0027128133
-
Encapsulation of proteins in transparent porous silicate glasses prepared by the sol-gel method
-
Ellerby, L. M., Nishida, C. R., Nishida, F., Yamanaka, S. A., Dunn, B., Valentine, J. S., and Zink, J. I. (1992) Encapsulation of proteins in transparent porous silicate glasses prepared by the sol-gel method. Science 255, 1113-1115.
-
(1992)
Science
, vol.255
, pp. 1113-1115
-
-
Ellerby, L.M.1
Nishida, C.R.2
Nishida, F.3
Yamanaka, S.A.4
Dunn, B.5
Valentine, J.S.6
Zink, J.I.7
-
6
-
-
0029163340
-
Fixation of the quaternary structures of human adult haemoglobin by encapsulation in transparent porous silica gels
-
Shibayama, N., and Saigo, S. (1995) Fixation of the quaternary structures of human adult haemoglobin by encapsulation in transparent porous silica gels. J. Mol. Biol. 251, 203-209.
-
(1995)
J. Mol. Biol
, vol.251
, pp. 203-209
-
-
Shibayama, N.1
Saigo, S.2
-
7
-
-
0033585545
-
Kinetics of the allosteric transition in hemoglobin within silicate sol-gels
-
Shibayama, N., and Saigo, S. (1999) Kinetics of the allosteric transition in hemoglobin within silicate sol-gels. J. Am. Chem. Soc. 121, 444-445.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 444-445
-
-
Shibayama, N.1
Saigo, S.2
-
8
-
-
0033614012
-
Functional analysis of hemoglobin molecules locked in doubly liganded conformations
-
Shibayama, N. (1999) Functional analysis of hemoglobin molecules locked in doubly liganded conformations. J. Mol. Biol. 285, 1383-1388.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 1383-1388
-
-
Shibayama, N.1
-
9
-
-
0037414277
-
Oxygen equilibrium properties of myoglobin locked in the liganded and unliganded conformations
-
Shibayama, N., and Saigo, S. (2003) Oxygen equilibrium properties of myoglobin locked in the liganded and unliganded conformations. J. Am. Chem. Soc. 125, 3780-3783.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 3780-3783
-
-
Shibayama, N.1
Saigo, S.2
-
10
-
-
33645455485
-
Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy
-
Massari, A. M., Finkelstein, I. J., and Fayer, M. D. (2006) Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy. J. Am. Chem. Soc. 128, 3990-3997.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 3990-3997
-
-
Massari, A.M.1
Finkelstein, I.J.2
Fayer, M.D.3
-
11
-
-
0034319623
-
Unfolding and refolding of sol-gel encapsulated carbonmonoxymyoglobin: An orchestrated spectroscopic study of intermediates and kinetics
-
Samuni, U., Navati, M. S., Juszczak, L. J., Dantsker, D., Yang, M., and Friedman, J. M. (2000) Unfolding and refolding of sol-gel encapsulated carbonmonoxymyoglobin: An orchestrated spectroscopic study of intermediates and kinetics. J. Phys. Chem. B 104, 10802-10813.
-
(2000)
J. Phys. Chem. B
, vol.104
, pp. 10802-10813
-
-
Samuni, U.1
Navati, M.S.2
Juszczak, L.J.3
Dantsker, D.4
Yang, M.5
Friedman, J.M.6
-
12
-
-
0037386695
-
Binding and release of iron by gel-encapsulated human transferrin: Evidence for a conformational search
-
Navati, M. S., Samuni, U., Aisen, P., and Friedman, J. M. (2003) Binding and release of iron by gel-encapsulated human transferrin: Evidence for a conformational search. Proc. Natl. Acad. Sci. U.S.A. 100, 3832-3837.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 3832-3837
-
-
Navati, M.S.1
Samuni, U.2
Aisen, P.3
Friedman, J.M.4
-
13
-
-
5144223974
-
New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels
-
Viappiani, C., Bettati, S., Bruno, S., Ronda, L., Abbruzzetti, S., Mozzarelli, A., and Eaton, W. A. (2004) New insights into allosteric mechanisms from trapping unstable protein conformations in silica gels. Proc. Natl. Acad. Sci. U.S.A. 101, 14414-14419.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 14414-14419
-
-
Viappiani, C.1
Bettati, S.2
Bruno, S.3
Ronda, L.4
Abbruzzetti, S.5
Mozzarelli, A.6
Eaton, W.A.7
-
14
-
-
0026781019
-
Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy
-
Elöve, G. A., Chaffotte, A. F., Roder, H., and Goldberg, M. E. (1992) Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy. Biochemistry 31, 6876-6883.
-
(1992)
Biochemistry
, vol.31
, pp. 6876-6883
-
-
Elöve, G.A.1
Chaffotte, A.F.2
Roder, H.3
Goldberg, M.E.4
-
15
-
-
0031919973
-
Evidence for barrier-limited protein folding kinetics on the microsecond time scale
-
Shastry, M. C. R., and Roder, H. (1998) Evidence for barrier-limited protein folding kinetics on the microsecond time scale. Nat. Struct. Biol. 5, 385-392.
-
(1998)
Nat. Struct. Biol
, vol.5
, pp. 385-392
-
-
Shastry, M.C.R.1
Roder, H.2
-
16
-
-
0034121798
-
Stepwise formation of α-helices during cytochrome c folding
-
Akiyama, S., Takahashi, S., Ishimori, K., and Morishima, I. (2000) Stepwise formation of α-helices during cytochrome c folding. Nat. Struct. Biol. 7, 514-520.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 514-520
-
-
Akiyama, S.1
Takahashi, S.2
Ishimori, K.3
Morishima, I.4
-
17
-
-
0034714154
-
Two-state expansion and collapse of a polypeptide
-
Hagen, S. J., and Eaton, W. A. (2000) Two-state expansion and collapse of a polypeptide. J. Mol. Biol. 301, 1019-1027.
-
(2000)
J. Mol. Biol
, vol.301
, pp. 1019-1027
-
-
Hagen, S.J.1
Eaton, W.A.2
-
18
-
-
0042527446
-
Highly nonexponential kinetics in the early-phase refolding of proteins at low temperatures
-
Saigo, S., and Shibayama, N. (2003) Highly nonexponential kinetics in the early-phase refolding of proteins at low temperatures. Biochemistry 42, 9669-9676.
-
(2003)
Biochemistry
, vol.42
, pp. 9669-9676
-
-
Saigo, S.1
Shibayama, N.2
-
19
-
-
7444252271
-
Modulation of the folding energy landscape of cytochrome c with salt
-
Zhong, S., Rousseau, D. L., and Yeh, S.-R. (2004) Modulation of the folding energy landscape of cytochrome c with salt. J. Am. Chem. Soc. 126, 13934-13935.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 13934-13935
-
-
Zhong, S.1
Rousseau, D.L.2
Yeh, S.-R.3
-
20
-
-
0015526732
-
Participation of the protein ligands in the folding of cytochrome c
-
Babul, J., and Stellwagen, E. (1972) Participation of the protein ligands in the folding of cytochrome c. Biochemistry 11, 1195-1200.
-
(1972)
Biochemistry
, vol.11
, pp. 1195-1200
-
-
Babul, J.1
Stellwagen, E.2
-
21
-
-
0030322627
-
Structure of very early protein folding intermediates: New insights through a variant of hydrogen exchange labeling
-
Gladwin, S. T., and Evans, P. A. (1996) Structure of very early protein folding intermediates: New insights through a variant of hydrogen exchange labeling. Folding Des. 1, 407-417.
-
(1996)
Folding Des
, vol.1
, pp. 407-417
-
-
Gladwin, S.T.1
Evans, P.A.2
-
22
-
-
0034718524
-
Distinguishing between two-state and three-state models for ubiquitin folding
-
Krantz, B. A., and Sosnick, T. R. (2000) Distinguishing between two-state and three-state models for ubiquitin folding. Biochemistry 39, 11696-11701.
-
(2000)
Biochemistry
, vol.39
, pp. 11696-11701
-
-
Krantz, B.A.1
Sosnick, T.R.2
-
23
-
-
2942617191
-
Is an intermediate state populated on the folding pathway of ubiquitin?
-
Went, H. M., Benitez-Cardoza, C. G., and Jackson, S. E. (2004) Is an intermediate state populated on the folding pathway of ubiquitin? FEBS Lett. 567, 333-338.
-
(2004)
FEBS Lett
, vol.567
, pp. 333-338
-
-
Went, H.M.1
Benitez-Cardoza, C.G.2
Jackson, S.E.3
-
24
-
-
0023644679
-
Structure of ubiquitin refined at 1.8 Å resolution
-
Vijay-Kumar, S., Bugg, C. E., and Cook, W. J. (1987) Structure of ubiquitin refined at 1.8 Å resolution. J. Mol. Biol. 194, 531-544.
-
(1987)
J. Mol. Biol
, vol.194
, pp. 531-544
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Cook, W.J.3
-
25
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
Khorasanizadeh, S., Peters, I. D., and Roder, H. (1996) Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues. Nat. Struct. Biol. 3, 193-205.
-
(1996)
Nat. Struct. Biol
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
26
-
-
2942623941
-
Multiple probes reveal a native-like intermediate during low-temperature refolding of ubiquitin
-
Larios, E., Li, J. S., Schulten, K., Kihara, H., and Gruebele, M. (2004) Multiple probes reveal a native-like intermediate during low-temperature refolding of ubiquitin. J. Mol. Biol. 340, 115-125.
-
(2004)
J. Mol. Biol
, vol.340
, pp. 115-125
-
-
Larios, E.1
Li, J.S.2
Schulten, K.3
Kihara, H.4
Gruebele, M.5
-
27
-
-
0017027586
-
Ferricytochrome c chain folding measured by the energy transfer of tryptophan 59 to the heme group
-
Tsong, T. Y. (1976) Ferricytochrome c chain folding measured by the energy transfer of tryptophan 59 to the heme group. Biochemistry 15, 5467-5473.
-
(1976)
Biochemistry
, vol.15
, pp. 5467-5473
-
-
Tsong, T.Y.1
-
29
-
-
27944462187
-
Effect of sol-gel encapsulation on the unfolding of ferric horse heart cytochrome c
-
Droghetti, E., and Smulevich, G. (2005) Effect of sol-gel encapsulation on the unfolding of ferric horse heart cytochrome c. J. Biol. Inorg. Chem. 10, 696-703.
-
(2005)
J. Biol. Inorg. Chem
, vol.10
, pp. 696-703
-
-
Droghetti, E.1
Smulevich, G.2
-
30
-
-
0347004633
-
Hydrophobic effect of trityrosine on heme ligand exchange during folding of cytochrome c
-
Hirota, S., Suzuki, M., and Watanabe, Y. (2004) Hydrophobic effect of trityrosine on heme ligand exchange during folding of cytochrome c. Biochem. Biophys. Res. Commun. 314, 452-458.
-
(2004)
Biochem. Biophys. Res. Commun
, vol.314
, pp. 452-458
-
-
Hirota, S.1
Suzuki, M.2
Watanabe, Y.3
-
31
-
-
0024417964
-
The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure
-
Kuwajima, K. (1989) The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins: Struct., Funct., Genet. 6, 87-103.
-
(1989)
Proteins: Struct., Funct., Genet
, vol.6
, pp. 87-103
-
-
Kuwajima, K.1
-
32
-
-
33750371053
-
Protein folding is slaved to solvent motions
-
Frauenfelder, F., Fenimore, P. W., Chen, G., and McMahon, B. H. (2006) Protein folding is slaved to solvent motions. Proc. Natl. Acad. Sci. U.S.A. 103, 15469-15472.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 15469-15472
-
-
Frauenfelder, F.1
Fenimore, P.W.2
Chen, G.3
McMahon, B.H.4
-
33
-
-
0037195604
-
Water in confinement
-
Levinger, N. E. (2002) Water in confinement. Science 298, 1722-1723.
-
(2002)
Science
, vol.298
, pp. 1722-1723
-
-
Levinger, N.E.1
-
34
-
-
33845214932
-
NMR spectroscopy can characterize proteins encapsulated in a sol-gel matrix
-
Wheeler, K. E., Nocek, J. M., and Hoffman, B. M. (2006) NMR spectroscopy can characterize proteins encapsulated in a sol-gel matrix. J. Am. Chem. Soc. 128, 14782-14783.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 14782-14783
-
-
Wheeler, K.E.1
Nocek, J.M.2
Hoffman, B.M.3
-
36
-
-
0028402689
-
The barriers in protein folding
-
Sosnick, T. R., Mayne, L., Hiller, R., and Englander, S. W. (1994) The barriers in protein folding. Nat. Struct. Biol. 1, 149-156.
-
(1994)
Nat. Struct. Biol
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
37
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick, T. R., Mayne, L., and Englander, S. W. (1996) Molecular collapse: The rate-limiting step in two-state cytochrome c folding. Proteins: Struct., Funct., Genet. 24, 413-426.
-
(1996)
Proteins: Struct., Funct., Genet
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
38
-
-
19944380329
-
-
Wiley-VCH, Weinheim, Germany
-
Roder, H., Maki, K., Latypov, R. F., Cheng, H., and Shastry, M. C. R. (2005) Protein Folding Handbook, Part I, pp 491-535, Wiley-VCH, Weinheim, Germany.
-
(2005)
Protein Folding Handbook, Part I
, pp. 491-535
-
-
Roder, H.1
Maki, K.2
Latypov, R.F.3
Cheng, H.4
Shastry, M.C.R.5
-
39
-
-
0032147243
-
Protein folding mechanisms and the multidimensional folding funnel
-
Socci, N. D., Onuchic, J. N., and Wolynes, P. G. (1998) Protein folding mechanisms and the multidimensional folding funnel. Proteins: Struct., Funct., Genet. 32, 136-158.
-
(1998)
Proteins: Struct., Funct., Genet
, vol.32
, pp. 136-158
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
40
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson, J. D., Onuchic, J. N., Socci, N. D., and Wolynes, P. G. (1995) Funnels, pathways, and the energy landscape of protein folding: A synthesis. Proteins: Struct., Funct., Genet. 21, 167-195.
-
(1995)
Proteins: Struct., Funct., Genet
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
41
-
-
0032989351
-
Observation of strange kinetics in protein folding
-
Sabelko, J., Ervin, J., and Gruebele, M. (1999) Observation of strange kinetics in protein folding. Proc. Natl. Acad. Sci. U.S.A. 96, 6031-6036.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, pp. 6031-6036
-
-
Sabelko, J.1
Ervin, J.2
Gruebele, M.3
|