Folding and misfolding in a naturally occurring circularly permuted PDZ domain

Journal of Biological Chemistry

Volumn 283, Issue 14, 2008, Pages 8954-8960

  Ivarsson, Ylva ^a   Travaglini Allocatelli, Carlo ^a   Brunori, Maurizio ^a   Gianni, Stefano ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR PERMUTATIONS; FOLDING MECHANISMS; FOLDING PATHWAYS; FUNCTIONAL SITES; GREEN ALGA; KINETIC TRAPS; LOW ENERGIES; MISFOLDING; MULTIDOMAIN PROTEINS; PDZ DOMAINS; PRIMARY STRUCTURES; SCENEDESMUS; STRUCTURAL REARRANGEMENTS; TWO CHAINS;

PROTEIN FOLDING;

AMINO ACID SEQUENCE; ARTICLE; GREEN ALGA; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; SCENEDESMUS; CHEMISTRY; GENETICS; PDZ DOMAIN; PHYSIOLOGY; STRUCTURE ACTIVITY RELATION;

CHLOROPHYTA; SCENEDESMUS OBLIQUUS;

ALGAL PROTEIN;

ALGAL PROTEINS; PDZ DOMAINS; PROTEIN FOLDING; SCENEDESMUS; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 44049089395     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M707424200     Document Type: Article

References (35)

1. Baker, D. (2000) Nature 405, 39-42
2. Plaxco, K. W., Simons, K. T., and Baker, D. (1998) J. Mol. Biol. 277, 985-994
3. Abkevich, V. I., Gutin, A. M., and Shakhnovich, E. I. (1994) Biochemistry 33, 10026-10036
4. Fersht, A. R. (1995) Proc. Natl. Acad. Sci. U. S. A. 21, 10869-10873
5. Li, L., and Shakhnovich, E. I. (2001) J. Mol. Biol. 306, 121-132
6. Lindberg, M., Tangrot, J., and Oliveberg, M. (2002) Nat. Struct. Biol. 9, 818-822
7. Miller, E. J., Fischer, K. F., and Marqusee, S. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 10359-10363
8. Otzen, D. E., and Fersht, A. R. (1998) Biochemistry 37, 8139-8146
9. Viguera, A. R., Serrano, L., and Wilmanns, M. (1996) Nat. Struct. Biol. 3, 874-880
10. Lindqvist, Y., and Schneider, G. (1997) Curr. Opin. Struct. Biol. 7, 422-427
11. Vogel, C., and Morea, V. (2006) BioEssays 28, 973-978
12. Lindberg, M. O., Tångrot, J., Otzen, D. E., Dolgikh, D. A., Finkelstein, A. V., and Oliveberg, M. (2001) J. Mol. Biol. 314, 891-900
13. Lindberg, M. O., and Oliveberg, M. (2007) Curr. Opin. Struct. Biol. 17, 21-29
14. Harris, B. Z., and Lim, W. A. (2001) J. Cell Sci. 114, 3219-3231
15. Liao, D. I., Qian, J., Chisholm, D. A., Jordan, D. B., and Diner, B. A. (2000) Nat. Struct. Biol. 7, 749-753
16. Gianni, S., Calosci, N., Aelen, J. M., Vuister, G. W., Brunori, M., and Travaglini-Allocatelli, C. (2005) Prot. Eng. Des. Sel. 18, 389-395
17. Chi, C. N., Gianni, S., Calosci, N., Travaglini-Allocatelli, C., Engstrom, K., and Jemth, P. (2007) FEBS Lett. 581, 1109-1113
18. Ivarsson, Y., Travaglini-Allocatelli, C., Jemth, P., Malatesta, F., Brunori, M., and Gianni, S. (2007) J. Biol. Chem. 282, 8568-8572
19. Gianni, S., Geierhaas, C. D., Calosci, N., Jemth, P., Vuister, G. W., Travaglini-Allocatelli, C., Vendruscolo, M., and Brunori, M. (2007) Proc. Natl. Acad. Sci. U. S. A. 104, 128-133
20. Jemth, P., Gianni, S., Day, R., Li, B., Johnson, C. M., Daggett, V., and Fersht, A. R. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 6450-6455
21. Kiefhaber, T. (1995) Proc. Natl. Acad. Sci. U. S. A. 101, 9029-9033
22. Trost, J. T., Chrisholm, D. A., Jordan, D. B., and Diner, B. A. (1997) J. Biol. Chem. 272, 20348-20356
23. Diner, B. A., Ries, D. F., Cohen, B. N., and Metz, J. G. (1988) J. Biol. Chem. 263, 8972-8980
24. Fujita, S., Inagaki, N., Ono, T., Inoue, Y., and Satoh, K. (1989) FEBS Lett. 255, 1-4
25. Gianni, S., Engstrom, A., Larsson, M., Calosci, N., Malatesta, F., Eklund, L., Ngang, C. C., Travaglini-Allocatelli, C., and Jemth, P. (2005) J. Biol. Chem. 280, 34805-34812
26. Yamamoto, Y., Inagaki, N., and Satoh, K. (2001) J. Biol. Chem. 276, 7518-7525
27. Silow, M., and Oliveberg, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 1997, 6084-6086
28. Jackson, S. E., and Fersht, A. R. (1991) Biochemistry 30, 10436-10443
29. Onuchic, J. N., Luthey-Schulten, Z., and Wolynes, P. G. (1997) Annu. Rev. Phys. Chem. 48, 545-600
30. Ferreiro, D. U., Hegler, J. A., Komives, E. A., and Wolynes, P. G. (2000) Proc. Natl. Acad. Sci. U. S. A., 19819-19824
31. Oliveberg, M., and Wolynes, P. G. (2006) Q. Rev. Biophys. 38, 245-288
32. Pandya, M. J., Williams, P. B., Dempsey, C. E., Shewry, P. R., and Clarke, A. R. (1999) J. Biol. Chem. 38, 26828-26837
33. Wu, Y., Vadrevu, R., Kathuria, S., Yang, X., and Matthews, C. R. (2007) J. Mol. Biol. 366, 1624-1638
34. Fersht, A. R., and Sato, S. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 7976-7981
35. Dobson, C. M. (2003) Nature 426, 884-890