Rate distortion theory in cellular signaling

Forty-first Annual Conference on Information Sciences and Systems, CISS 2007 - Proceedings

Volumn , Issue , 2007, Pages 172-173

  Andrews, Burton W ^a   Iglesias, Pablo A ^a  

^a Johns Hopkins University   (United States)

Author keywords

Cellular signaling; Chemotaxis; Decision making; Rate distortion; Systems biology

Indexed keywords

CELLULAR SIGNALING; CHEMOTAXIS; RATE DISTORTION; SYSTEMS BIOLOGY;

COMPUTER SIMULATION; DECISION MAKING; ENZYMES; ESCHERICHIA COLI; YEAST;

SIGNAL TRANSDUCTION;

EID: 44049085157     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CISS.2007.4298294     Document Type: Conference Paper

References (16)

1. W. Xiong and J. E. J. Ferrell, "A positive-feedback-based bistable 'memory module' that governs a cell fate decision," Nature, vol. 426, no. 6965, pp. 460-165, Nov 2003.
2. S. A. Moore, "Comparison of dose-response curves for alpha factor-induced cell division arrest, agglutination, and projection formation of yeast cells. Implication for the mechanism of alpha factor action," J Biol Chem, vol. 258, no. 22, pp. 13 849-13 856, Nov 1983.
3. N. Barkai and S. Leibler, "Robustness in simple biochemical networks," Nature, vol. 387, no. 6636, pp. 913-917, Jun 1997.
4. R. S. Lewis, "Calcium signaling mechanisms in T lymphocytes," Annu Rev Immunol, vol. 19, pp. 497-521, 2001.
5. T. Berger, Rate Distortion Theory: A Mathematical Basis for Data Compression. Englewood Cliffs, NJ: Prentice-Hall, 1971.
6. _, "Living information theory (the 2002 shannon lecture)" IEEE Information Theory Society Newsletter, vol. 53, no. 1, pp. 1,6-19, Mar 2003.
7. R. A. Gatenby and B. R. Frieden, "Information Theory in Living Systems, Methods, Applications, and Challenges," Bull Math Biol, Nov 2006.
8. M. Vergassola, E. Villermaux, and B. I. Shraiman, "'Infotaxis' as a strategy for searching without gradients," Nature, vol. 445, no. 7126, pp. 406-409, Jan 2007.
9. A. Borst and F. E. Theunissen, "Information theory and neural coding," Nat Neurosci, vol. 2, no. 11, pp. 947-957, Nov 1999.
10. T. Alvager, G. Graham, R. Hilleke, D. Hutchison, and J. Westgard, "On the information content of the genetic code," Biosystems, vol. 22, no. 3, pp. 189-196, 1989.
11. O. Weiss, M. A. Jimenez-Montano, and H. Herzel, "Information content of protein sequences," J Theor Biol, vol. 206, no. 3, pp. 379-386, Oct 2000.
12. T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht, "Information content of binding sites on nucleotide sequences," J Mol Biol, vol. 188, no. 3, pp. 415-431, Apr 1986.
13. C. E. Shannon, "A mathematical theory of communication," Bell System Tech. J., vol. 27, pp. 379-623, 1948.
14. P. Devreotes and C. Janetopoulos, "Eukaryotic Chemotaxis: distinctions between directional sensing and polarization," J Biol Chem, vol. 278, no. 23, pp. 20445-20448, Jun 2003.
15. N. Andrew and R. H. Insall, "Chemotaxis in shallow gradients is mediated independently of Ptdlns 3-kinase by biased choices between random protrusions," Nat Cell Biol, Jan 2007.
16. L. Ma, C. Janetopoulos, L. Yang, P. N. Devreotes, and P. A. Iglesias, "Two complementary, local excitation, global inhibition mechanisms acting in parallel can explain the chemoattractant-induced regulation of PI(3,4,5)P3 response in dictyostelium cells," Biophys J, vol. 87, no. 6, pp. 3764-3774, Dec 2004.