메뉴 건너뛰기




Volumn 47, Issue 3, 2008, Pages 1157-1172

A molecular phylogeny of the wild onions (Allium; Alliaceae) with a focus on the western North American center of diversity

Author keywords

Allium; Amerallium; Californian endemic; Ecological reconstruction; ETS; ITS; Lophioprason; Molecular phylogeny; Serpentine; Wild onion

Indexed keywords

ADAPTATION; ARTICLE; BAYES THEOREM; GARLIC; GENETIC DATABASE; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; NORTH AMERICA; PHYLOGENY; SOIL; STATISTICAL MODEL;

EID: 43949103046     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.12.006     Document Type: Article
Times cited : (88)

References (38)
  • 1
    • 0000483623 scopus 로고
    • Evolution and biogeography of Madrean-Tethyan sclerophyll vegetation
    • Axelrod D.I. Evolution and biogeography of Madrean-Tethyan sclerophyll vegetation. Annals of the Missouri Botanical Garden 62 (1975) 280-334
    • (1975) Annals of the Missouri Botanical Garden , vol.62 , pp. 280-334
    • Axelrod, D.I.1
  • 2
    • 0032233179 scopus 로고    scopus 로고
    • Phylogenetic utility of the external transcribes spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae)
    • Baldwin B.G., and Markos S. Phylogenetic utility of the external transcribes spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae). Molecular Phylogenetics and Evolution 10 (1998) 449-463
    • (1998) Molecular Phylogenetics and Evolution , vol.10 , pp. 449-463
    • Baldwin, B.G.1    Markos, S.2
  • 3
    • 0032099630 scopus 로고    scopus 로고
    • Biogeography and floral evolution of Baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets
    • Baum D.A., Small R.L., and Wendel J.F. Biogeography and floral evolution of Baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Systematic Biology 47 (1998) 181-207
    • (1998) Systematic Biology , vol.47 , pp. 181-207
    • Baum, D.A.1    Small, R.L.2    Wendel, J.F.3
  • 6
    • 43949108139 scopus 로고    scopus 로고
    • Conservation-International, 2007. Biodiversity Hotspots: California Floristic Province.
    • Conservation-International, 2007. Biodiversity Hotspots: California Floristic Province.
  • 8
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle J.J., and Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19 (1987) 11-15
    • (1987) Phytochemistry Bulletin , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 9
    • 0032910987 scopus 로고    scopus 로고
    • Relationships among Old and New World Alliums according to ITS DNA sequence analysis
    • Dubouzet J.G., and Shinoda K. Relationships among Old and New World Alliums according to ITS DNA sequence analysis. Theoretical Applied Genetics 98 (1999) 422-433
    • (1999) Theoretical Applied Genetics , vol.98 , pp. 422-433
    • Dubouzet, J.G.1    Shinoda, K.2
  • 10
    • 0031698299 scopus 로고    scopus 로고
    • Phylogeny of Allium L. subgenus Melanocrommyum (Webb et Berth.) Rouy based on DNA sequence analysis of the internal transcribed spacer region of nrDNA
    • Dubouzet J.G., and Shinoda K. Phylogeny of Allium L. subgenus Melanocrommyum (Webb et Berth.) Rouy based on DNA sequence analysis of the internal transcribed spacer region of nrDNA. Theoretical Applied Genetics 97 (1998) 541-549
    • (1998) Theoretical Applied Genetics , vol.97 , pp. 541-549
    • Dubouzet, J.G.1    Shinoda, K.2
  • 11
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 12
    • 33744545304 scopus 로고    scopus 로고
    • Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear ribosomal DNA ITS sequences
    • Friesen N., Fritsch R.M., and Blattner F.R. Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear ribosomal DNA ITS sequences. Aliso 22 (2006) 372-395
    • (2006) Aliso , vol.22 , pp. 372-395
    • Friesen, N.1    Fritsch, R.M.2    Blattner, F.R.3
  • 15
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 16
    • 0031695142 scopus 로고    scopus 로고
    • Applications and impact of molecular markers on evolutionary and diversity studies in the genus Allium
    • Klaas M. Applications and impact of molecular markers on evolutionary and diversity studies in the genus Allium. Plant Breeding 117 (1998) 297-308
    • (1998) Plant Breeding , vol.117 , pp. 297-308
    • Klaas, M.1
  • 17
    • 33645608015 scopus 로고    scopus 로고
    • Molecular markers in Allium
    • Rabinovich H.D., and Currah L. (Eds), CABI Publishing (chapter 4)
    • Klass M., and Friesen N. Molecular markers in Allium. In: Rabinovich H.D., and Currah L. (Eds). Allium Crop Science Recent Advances (2002), CABI Publishing 159-185 (chapter 4)
    • (2002) Allium Crop Science Recent Advances , pp. 159-185
    • Klass, M.1    Friesen, N.2
  • 19
    • 0001028314 scopus 로고    scopus 로고
    • Chloroplast DNA restriction analysis and the infrageneric grouping of Allium (Alliaceae)
    • Linne von Berg G., Samoylov A., Klaas M., and Hanelt P. Chloroplast DNA restriction analysis and the infrageneric grouping of Allium (Alliaceae). Plant Systematics and Evolution 200 (1996) 253-261
    • (1996) Plant Systematics and Evolution , vol.200 , pp. 253-261
    • Linne von Berg, G.1    Samoylov, A.2    Klaas, M.3    Hanelt, P.4
  • 21
    • 43949110145 scopus 로고    scopus 로고
    • Maddison, W.P., Maddison, D.R., 2006. Mesquite: a modular system for evolutionary analysis.
    • Maddison, W.P., Maddison, D.R., 2006. Mesquite: a modular system for evolutionary analysis.
  • 22
    • 0344318081 scopus 로고
    • Taxonomy of North American species of Allium
    • Hanelt P., Hammer K., and Knupffer H. (Eds), Institute of Genetics and Crop Plant Research, Gatersleben, Germany
    • McNeal D.W. Taxonomy of North American species of Allium. In: Hanelt P., Hammer K., and Knupffer H. (Eds). The Genus Allium-Taxonomic Problems and Genetic Resources (1992), Institute of Genetics and Crop Plant Research, Gatersleben, Germany 195-204
    • (1992) The Genus Allium-Taxonomic Problems and Genetic Resources , pp. 195-204
    • McNeal, D.W.1
  • 23
    • 43949130958 scopus 로고    scopus 로고
    • McNeal, D.W., Jacobsen, T.D., 2002. Allium L. In: F. o. N.A.E. Committee (ed.), Flora of North America. NYBG Press, New York, USA.
    • McNeal, D.W., Jacobsen, T.D., 2002. Allium L. In: F. o. N.A.E. Committee (ed.), Flora of North America. NYBG Press, New York, USA.
  • 24
    • 0033120995 scopus 로고    scopus 로고
    • Evolution of the chloroplast genome and polymorphic ITS regions in Allium subgenus Melanocrommyum
    • Mes T.H., Fritsch R.M., Pollner S., and Bachmann K. Evolution of the chloroplast genome and polymorphic ITS regions in Allium subgenus Melanocrommyum. Genome 42 (1999) 237-247
    • (1999) Genome , vol.42 , pp. 237-247
    • Mes, T.H.1    Fritsch, R.M.2    Pollner, S.3    Bachmann, K.4
  • 25
    • 32544442337 scopus 로고    scopus 로고
    • Serpentine and nonserpentine Achillea millefolium accessions differ in serpentine substrate tolerance and response to organic and inorganic amendments
    • O'Dell R.E., and Claassen V.P. Serpentine and nonserpentine Achillea millefolium accessions differ in serpentine substrate tolerance and response to organic and inorganic amendments. Plant and Soil 279 (2006) 253-269
    • (2006) Plant and Soil , vol.279 , pp. 253-269
    • O'Dell, R.E.1    Claassen, V.P.2
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 27
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 0032945598 scopus 로고    scopus 로고
    • Use of chloroplast polymorphisms for the phylogenetic study of Allium subgenera Amerallium and Bromatorrhiza (Alliaceae) II
    • Samoylov A., Friesen N., Pollner S., and Hanelt P. Use of chloroplast polymorphisms for the phylogenetic study of Allium subgenera Amerallium and Bromatorrhiza (Alliaceae) II. Feddes Repert 110 (1999) 103-109
    • (1999) Feddes Repert , vol.110 , pp. 103-109
    • Samoylov, A.1    Friesen, N.2    Pollner, S.3    Hanelt, P.4
  • 30
    • 0029187852 scopus 로고
    • Use of chloroplast polymorphisms for the phylogenetic study of subgenera Amerallium and Bromatorrhiza (genus Allium)
    • Samoylov A., Klaas M., and Hanelt P. Use of chloroplast polymorphisms for the phylogenetic study of subgenera Amerallium and Bromatorrhiza (genus Allium). Feddes Repert 106 (1995) 161-167
    • (1995) Feddes Repert , vol.106 , pp. 161-167
    • Samoylov, A.1    Klaas, M.2    Hanelt, P.3
  • 31
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons M.P., and Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49 (2000) 369-381
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 32
    • 6344264146 scopus 로고
    • How many species of Allium are known?
    • Stern W.T. How many species of Allium are known?. Kew Magazine 9 (1992) 180-182
    • (1992) Kew Magazine , vol.9 , pp. 180-182
    • Stern, W.T.1
  • 33
    • 43949141090 scopus 로고    scopus 로고
    • *. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
    • *. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, Massachusetts.
  • 34
    • 0013624002 scopus 로고
    • The subgenera, sections and subsection of Allium L
    • Traub H.P. The subgenera, sections and subsection of Allium L. Plant Life 24 (1968) 147-163
    • (1968) Plant Life , vol.24 , pp. 147-163
    • Traub, H.P.1
  • 35
    • 0345612563 scopus 로고
    • Genus Allium L.-subgenera, sections and subsections
    • Traub H.P. Genus Allium L.-subgenera, sections and subsections. Plant Life 28 (1972) 132-137
    • (1972) Plant Life , vol.28 , pp. 132-137
    • Traub, H.P.1
  • 37
    • 32044457180 scopus 로고    scopus 로고
    • Local adaptation to serpentine and non-serpentine soils in Collinsia sparsiflora
    • Wright J.W., Stanton M.L., and Scherson R. Local adaptation to serpentine and non-serpentine soils in Collinsia sparsiflora. Evolutionary Ecology Research 8 (2006) 1-21
    • (2006) Evolutionary Ecology Research , vol.8 , pp. 1-21
    • Wright, J.W.1    Stanton, M.L.2    Scherson, R.3
  • 38
    • 43949143386 scopus 로고    scopus 로고
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.
    • Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.