Investigation of polypeptide conformational transitions with two-dimensional Raman optical activity correlation analysis, applying autocorrelation and moving window approaches

Applied Spectroscopy

Volumn 62, Issue 5, 2008, Pages 469-475

  Ashton, L ^a   Blanch, E W ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Conformational transitions; Pol(L glutamic acid); Poly(L lysine); Raman optical activity; ROA; Two dimensional correlation

Indexed keywords

AUTOCORRELATION; CONFORMATIONS; DATA REDUCTION; OPTICAL CORRELATION; SELF ASSEMBLY; TWO DIMENSIONAL;

CONFORMATIONAL TRANSITIONS; GLUTAMIC ACID; RAMAN OPTICAL ACTIVITY; TWO-DIMENSIONAL CORRELATION;

POLYPEPTIDES;

PEPTIDE;

ARTICLE; CHEMISTRY; METHODOLOGY; PROTEIN CONFORMATION; PROTEIN FOLDING; RAMAN SPECTROMETRY; THERMODYNAMICS;

PEPTIDES; PROTEIN CONFORMATION; PROTEIN FOLDING; SPECTRUM ANALYSIS, RAMAN; THERMODYNAMICS;

EID: 43849109955     PISSN: 00037028     EISSN: None     Source Type: Journal    
DOI: 10.1366/000370208784344433     Document Type: Article

References (40)

1. L. Ashton, L. D. Barron, B. Czamik-Matusewicz, L. Hecht, J. Hyde, and E. W. Blanch, Mol. Phys. 104, 1429 (2006).
2. L. Ashton, L. D. Barron, L. Hecht, J. Hyde, and E. W. Blanch, Analyst (Cambridge, U.K.) 132, 468 (2007).
3. Y. M. Jung, B. Czarnik-Matusewicz, and Y. Ozaki, J. Phys. Chem. 104, 7812 (2000).
4. S. Song and S. A. Asher, J. Am. Chem. Soc. 111, 4295 (1989).
5. F. Zhu, N. W. Isaacs, L. Hecht, and L. D. Barron, Structure 13, 1409 (2005).
6. L. D. Barron, M. P. Bogaard, and A. D. Buckingham, J. Am. Chem. Soc. 95, 603 (1973).
7. L. D. Barron, L. Hecht, I. H. McColl, and E. W. Blanch, Mol. Phys. 102, 731 (2004).
8. L. A. Nafie, Annu. Rev. Phys. Chem. 48, 357 (1997).
9. W. Hug, in Handbook of Vibrational Spectroscopy, J. M. Chalmers and P. R. Griffiths, Eds. (John Wiley and Sons, Chichester, 2002), vol. 1, p. 745.
10. L. D. Barron, E. W. Blanch, and L. Hecht, Adv. Protein Chem. 62, 51 (2002).
11. L. D. Barron, L. Hecht, E. W. Blanch, and A. F. Bell, Prog. Biophys. Mol. Biol. 73, 1 (2000).
12. E. W. Blanch, L. Hecht, and L. D. Barron, Methods 29, 196 (2003).
13. I. Noda, Appl. Spectrosc. 44, 550 (1990).
14. I. Noda, Appl. Spectrosc. 47, 1329 (1993).
15. I. Noda and Y. Ozaki, Two-dimensional correlation spectroscopy: Applications in vibrational and optical spectroscopy (John Wiley and Sons, Chichester, 2004).
16. F. Wang and P. L. Polavarapu, J. Phys. Chem. B 105, 7857 (2001).
17. L. Ashton, B. Czarnik-Matusewicz, and E. W. Blanch, J. Mol. Struct. 799, 61 (2006).
18. M. A. Czarnecki, Appl. Spectrosc. 52, 1583 (1998).
19. N. Greenfield and G. D. Fasman, Biochemistry 8, 4108 (1969).
20. S. Wooley and G. Holzwarth, Biochemistry 9, 3604 (1970).
21. S. Abbruzzetti, C. Viappiani, J. R. Small, L. J. Libertini, and E. W. Small, Biophys. J. 79, 2714 (2000).
22. P. R. Bergethon, The Physical Basis of Biochemistry (Springer-Verlag, New York, 1998).
23. M. Fändrich, M. A. Fletcher, and C. M. Dobson, Nature (London) 410, 165 (2001).
24. W. Dzwolak and V. Smirnovas, Biophys. Chem. 115, 49 (2005).
25. C. M. Dobson, Sem. Cell Dev. Biol. 15, 3 (2004).
26. M. Sunde, L. C. Sepell, M. Bartlam, P. E. Fraser, M. B. Pepys, and C. C. F. Blake, J. Mol. Biol. 273, 729 (1997).
27. J. W. Kelly, Curr. Opin. Struct. Biol. 8, 101 (1998).
28. S. Ohnishi and K. Takano, CMLS Cell. Mol. Life Sci. 61, 511 (2004).
29. M. Fändrich and C. M. Dobson, Eur. Mol. Biol. Org. J. 21, 5682 (2002).
30. L. D. Barron, Curr. Opin. Struct. Biol. 16, 638 (2006).
31. I. H. McColl, E. W. Blanch, L. Hecht, and L. D. Barron, J. Am. Chem. Soc. 126, 8181 (2004).
32. I. H. McColl, E. W. Blanch, A. C. Gill, A. G. O. Rhie, M. A. Ritchie, L. Hecht, K. Nielsen, and L. D. Barron, J. Am. Chem. Soc. 125, 10019 (2003).
33. T. A. Keiderling, R. A. G. D. Silva, G. Yoder, and R. K. Dukor, Bioorg. Med. Chem. 7, 133 (1998).
34. A. A. Adzhubei and M. J. E. Sternberg, J. Mol. Biol. 229, 427 (1993).
35. A. V. Mikhonin, N. S. Myshakina, S. V. Bykov, and S. A. Asher, J. Am. Chem. Soc. 127, 7712 (2005).
36. A. V. Mikhonin and S. A. Asher, J. Am. Chem. Soc. 128, 13789 (2006).
37. A. V. Mikhonin, S. A. Asher, S. V. Bykov, and A. Murza, J. Phys. Chem. 111, 3280 (2007).
38. Y. Liu, Y.-R. Chen, and Y. Ozaki, J. Agric. Food Chem. 48, 901 (2000).
39. M. Thomas and H. H. Richardson, Vib. Spectrosc. 24, 137 (2000).
40. S. T. Thomas, V. V. Loladze, and G. I. Makhatadze, Proc. Natl. Acad. Sci., U.S.A. 98, 10670 (2001).