Thermodynamic properties of polypeptide chains. Parallel tempering Monte Carlo simulations

Acta Physica Polonica B

Volumn 38, Issue 5, 2007, Pages 1899-1908

  Sikorsky, Andrzej ^a   Gront, Dominik ^a  

^a UNIVERSITY OF WARSAW   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CHAIN LENGTH; CONFORMATIONS; HYDROPHILICITY; MOLECULAR MODELING; MONTE CARLO METHODS; PROTEINS;

ALPHA CARBONS; COARSE GRAINED MODELS; PARALLEL TEMPERING SIMULATIONS; POLYPEPTIDE CHAINS;

POLYPEPTIDES;

EID: 43749121198     PISSN: 05874254     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (21)

1. K.A. Dill, S. Bromberg, K. Yue, K.M. Fiebig, D.P. Yee, P.D. Thomas, H.S. Chan, Protein Sci 4, 561 (1995).
2. K.A. Dill, Protein Sci. 8, 1166 (1999).
3. A. Kolinski, P. Madziar, Biopolymers 42, 537 (1997).
4. P. Romiszowski, A. Sikorski, Physica A 273, 190 (1999).
5. P. Romiszowski, A. Sikorski, Biopolymers 54 262, (2000).
6. Y.A. Kuznetsov, E.G. Timoshenko, J. Chem. Phys. 111, 3744 (1999).
7. Y.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson, J. Chem. Phys. 103, 4807 (1995).
8. J.P.K. Doye, R.P. Sear, D. Frenkel, J. Chem. Phys. 108, 2134 (1998).
9. V.A. Ivanov, W. Paul, K. Binder, J. Chem. Phys. 109, 5659 (1998).
10. A. Kolinski, J. Skolnick, Lattice Models of Protein Folding, Dynamics and Thermodynamics, Landes, Austin, Texas 1996.
11. A. Sikorski, J. Skolnick, Proc. Natl. Acad. Sci. USA 86, 2668 (1989).
12. A. Sikorski, J. Skolnick, Biopolymers 28, 1097 (1989).
13. A.M. Ferrenberg, R.H. Swendsen, Phys. Rev. Lett. 63, 1195 (1989).
14. S, Kumar, J.M. Rosenberg, D. Bouzida, R.H. Swendsen, P.A. Kollman, J. Comput. Chem. 13, 1011 (1992).
15. R.S. Hodges, A.K. Saund, P.C. Chong, R.E. Reid, J. Biol. Chem. 256, 1214 (1981).
16. E. Shakhnovich, A. Gutin, Proc. Natl. Acad. Sci. USA 90, 7195 (1993).
17. R.H. Swendsen, J-S. Wang, Phys. Rev. Lett. 57, 2607 (1986).
18. C.J. Geyer, in Proceedings of 23-rd Symposium on the Interface Foundation, Fairfax Station 1991.
19. D. Gront, A. Kolinski, J. Skolnick, J. Chem. Phys. 113, 5065 (2000).
20. D. Gront, A. Kolinski, J. Skolnick, J. Chem. Phys. 115, 1569 (2001).
21. N. Rathore, M. Chopra, J.J. de Pablo, J. Chem. Phys. 122, 024111 (2005).