Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences

Phycological Research

Volumn 56, Issue 2, 2008, Pages 127-138

  Yamaguchi, Haruyo ^a   Hoppenrath, Mona ^b   Takishita, Kiyotaka ^c   Horiguchi, Takeo ^d  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^c JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^d HOKKAIDO UNIVERSITY   (Japan)

Author keywords

Haramonas pauciplastida sp. nov.; Phylogeny; Raphidophyceae; Small subunit rDNA; Taxonomy; Ultrastructure

Indexed keywords

ALGA; CHLOROPLAST; GENETIC ANALYSIS; LIFE CYCLE; MORPHOLOGY; MOTILITY; PHYLOGENY; RNA; TAXONOMY; ULTRASTRUCTURE;

CANADA; NORTH AMERICA;

ALGAE; HARAMONAS; HARAMONAS DIMORPHA; HARAMONAS VIRIDIS; RAPHIDOPHYCEAE;

EID: 43749093841     PISSN: 13220829     EISSN: 14401835     Source Type: Journal    
DOI: 10.1111/j.1440-1835.2008.00493.x     Document Type: Article

References (40)

1. Bjørnland, T. and Liaaen‐Jensen, S. 1989. Distribution patterns of carotenoids in relation to chromophyte phylogeny and systematics. In Green, J. C., Leadbeater, B. S. C. and Diver, W. I. (Eds) The Chromophyte Algae: Problems and Perspectives. Clarendon Press, Oxford, pp. 37–60.
2. Bowers, H. A., Tomas, C., Tengs, T., Kempton, J. W., Lewitus, A. J. and Oldach, D. W. 2006. Raphidophyceae [Chadefaud ex Silva] systematics and rapid identification: sequence analyses and real‐time PCR assays. J. Phycol. 42: 1333–48.
3. Coleman, A. W. 1985. Diversity of plastid DNA configuration among classes of eukaryote algae. J. Phycol. 21: 1–16.
4. Connell, L. 2000. Nuclear ITS region of the alga Heterosigma akashiwo (Chromophyta: Raphidophyceae) is identical in isolates from Atlantic and Pacific basins. Mar. Biol. 136: 953–60.
5. Connell, L. 2002. Rapid identification of marine algae (Raphidophyceae) using three‐primer PCR amplification of nuclear internal transcribed spacer (ITS) regions from fresh and archived material. Phycologia 41: 15–21.
6. Figueroa, R. I. and Rengefors, K. 2006. Life cycle and sexuality of the freshwater raphidophyte Gonyostomum semen (Raphidophyceae). J. Phycol. 42: 859–71.
7. Fott, B. 1968. VIII. Klaasse Chloromonadophyceae. In Huber‐Pestalozzi, G. (Ed.) Das Phytoplankton des Süsswassers, Vol. 3, 2 nd edn. E. Schweizerbart, Stuttgart, pp. 79–93.
8. Grzebyk, D., Sako, Y. and Berland, B. 1998. Phylogenetic analysis of nine species of Prorocentrum (Dinophyceae) inferred from 18S ribosomal DNA sequences, morphological comparisons, and description of Prorocentrum panamensis sp. nov. J. Phycol. 34: 1055–68.
9. Hara, Y. and Chihara, M. 1982. Ultrastructure and taxonomy of Chattonella (Class Raphidophyceae) in Japan. Jpn J. Phycol. 30: 47–56. (in Japanese with English abstract).
10. Hara, Y. and Chihara, M. 1985. Ultrastructure and taxonomy of Fibrocapsa japonica (Class Raphidophyceae). Arch. Protistenk. 130: 133–41.
11. Hara, Y. and Chihara, M. 1987. Morphology, ultrastructure and taxonomy of the raphidophycean alga Heterosigma akashiwo. Bot. Mag. Tokyo 100: 151–63.
12. Hara, Y., Doi, K. and Chihara, M. 1994. Four new species of Chattonella (Raphidophyceae, Chromophyta) from Japan. Jpn J. Phycol. 42: 407–20.
13. Hara, Y., Inouye, I. and Chihara, M. 1985. Morphology and Ultrastructure of Olisthodiscus luteus (Raphidophyceae) with special reference to the taxonomy. Bot. Mag. Tokyo 98: 251–62.
14. Hard, J., Connell, L., Hershberger, W. and Harrell, L. 2000. Genetic variation in mortality of chinook salmon during a bloom of the marine alga Heterosigma akashiwo. J. Fish. Biol. 56: 1387–97.
15. Harrison, P. J., Waters, R. E. and Taylor, F. J. R. 1980. A broad spectrum artificial medium for coastal and open ocean phytoplankton. J. Phycol. 16: 28–35.
16. Heywood, P. 1980. Chloromonads. In Cox, E. R. (Ed.) Phytoflagellates. Elsevier North Holland Inc., New York, pp. 351–79.
17. Heywood, P. 1989. Some affinities of the Raphidophyceae with other chromophyte algae. In Green, J. C., Leadbeater, B. S. C. and Diver, W. I. (Eds) The Chromophyte Algae: Problems and Perspectives. Clarendon Press, Oxford, pp. 279–93.
18. Heywood, P. 1990. Phylum Raphidophyta. In Margulis, L., Corliss, J. O., Melkonian, M. and Chapman, D. J. (Eds) Handbook of Protoctista. Jones and Bartlett, Boston, pp. 318–25.
19. Horiguchi, T. 1996. Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol. Res. 44: 143–50.
20. Horiguchi, T. and Hoppenrath, M. 2003. Haramonas viridis sp. nov. (Raphidophyceae, Heterokontophyta), a new sand‐dwelling raphidophyte from cold temperate waters. Phycol. Res. 51: 61–7.
21. Hosoi‐Tanabe, S. Otake, I. and Sako, Y. 2006. Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C. marina, C. ovata, and C. verruculosa (Raphidophyceae) based on the rRNA gene family. Fish. Sci. 72: 1200–8.
22. Inouye, I. Hara, Y. and Chihara, M. 1992. Further observations on Olisthodiscus luteus (Raphidophyceae, Chromophyta): the flagellar apparatus ultrastructure. Jpn J. Phycol. 40: 333–48.
23. Mignot, J. P. 1967. Structure et ultrastucture de quelques Chloromonadines. Protistologica 3: 201–11.
24. Mignot, J. P. 1976. Compléments a l'étude des Chloromonadines. Ultrastructure de Chattonella subsalsa Biecheler flagella d'eau saumâtre. Protistologica 12: 279–93.
25. Moestrup, Ø. 2000. The flagellate cytoskeleton. In Leadbeater, B. S. C. and Green, J. C. (Eds) The Flagellates Unity, Diversity and Evolution. Taylor & Francis, London and New York, pp. 69–94.
26. Mostaert, A. S. Karsten, U. Hara, Y. and Watanabe, M. M. 1998. Pigments and fatty acids of marine raphidophytes: a chemotaxonomic re‐evaluation. Phycol. Res. 46: 213–20.
27. Nakayama, T. Marine, B. Krants, H. D. et al. 1998. The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear‐encorded SSU rRNA sequences. Protist 149: 367–80.
28. Posada, D. and Crandall, K. A. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817–18.
29. Reynolds, E. S. 1963. The use of lead citrate at high pH as an electron opaquestain in electron microscopy. J. Cell Biol. 17: 208–12.
30. Saitou, N. and Nei, M. 1987. The neighbor‐joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406–25.
31. Silva, P. C. 1980. Names of classes and families of living algae. Regnum Veg. 103: 1–156.
32. Spurr, A. R. 1969. A low viscosity epoxy resin embedding medium for electron microscopy. J. Ultrastruct. Res. 26: 31–43.
33. Swofford, D. L. 1998. Phylogenetic Analysis Using Parsimony (and Other Methods) Paup* 4.0. Sinauer Associates Inc., Sunderland, MA.
34. Tamura, K. and Nei, M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512–26.
35. Throndsen, J. 1993. The planktonic marine flagellates. In Tomas, C. R. (Ed.) Marine Phytoplankton, a Guide to Naked Flagellates and Coccolithophorids. Academic Press Inc., San Diego, CA, pp. 7–145.
36. Toriumi, S. and Takano, H. 1973. Fibrocapsa, a new genus in Chloromonadophyceae from Atsumi Bay, Japan. Bull. Tokai Reg. Fish. Res. Lab. 76: 25–35.
37. Tyrrell, J. V., Bergquist, P. R., Bergquist, P. L. and Scholin, C. A. 2001. Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japonica (Raphidophyceae) using rRNA‐targeted oligonucleotide probes. Phycologia 40: 457–67.
38. Uhlig, G. 1964. Eine einfach Methode zur Extraktion der vagilen, mesopsammalen Mikrofauna. Helgol. Wiss. Meeresunters. 11: 178–85.
39. Vesk, M. and Moestrup, Ø. 1987. The flagellar root systems in Heterosigma akashiwo (Raphidophyceae). Protoplasma 137: 15–28.
40. Vrieling, E. G., Koeman, R. P. T., Nagasaki, K. et al. 1995. Chattonella and Fibrocapsa (Raphidophyceae)–first observation of, potentially harmful, red tide organisms in Dutch coastal waters. Neth. J. Sea Res. 33: 183–91.