The evolution of protostome GATA factors: Molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships

BMC Evolutionary Biology

Volumn 8, Issue 1, 2008, Pages

  Gillis, William Q ^a   Bowerman, Bruce A ^a   Schneider, Stephan Q ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR GATA; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR GATA 2; TRANSCRIPTION FACTOR GATA 3; TRANSCRIPTION FACTOR GATA 4; TRANSCRIPTION FACTOR GATA 5; TRANSCRIPTION FACTOR GATA 6; ZINC FINGER PROTEIN;

ANALYTIC METHOD; ARTHROPOD; ARTICLE; CONTROLLED STUDY; DROSOPHILA; EXON; GENE CLUSTER; GENE DUPLICATION; GENE IDENTIFICATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC VARIABILITY; GENOME; INTRON; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MULTIGENE FAMILY; NEMATODE; NONHUMAN; ORTHOLOGY; SAMPLING; SYNTENY; AMINO ACID SEQUENCE; ANIMAL; CLASSIFICATION; GENETIC LINKAGE; GENETICS; INVERTEBRATE; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ARTHROPODA; BILATERIA; DEUTEROSTOMIA; INVERTEBRATA; LOPHOTROCHOZOA; NEMATODA; PROTOSTOMIA; VERTEBRATA;

AMINO ACID SEQUENCE; ANIMALS; ARTHROPODS; BASE SEQUENCE; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; EXONS; GATA TRANSCRIPTION FACTORS; GENE DUPLICATION; INTRONS; INVERTEBRATES; LINKAGE (GENETICS); MULTIGENE FAMILY; NEMATODA; PHYLOGENY; SYNTENY; ZINC FINGERS;

EID: 43549112127     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-112     Document Type: Article

References (21)

1. The GATA family (vertebrates and invertebrates). RKMG Patient JD, Curr Opin Genetics Dev 2002 12 4 416 422 10.1016/S0959-437X(02)00319-2
2. Ectoderm- and endomesoderm-specific GATA transcription factors in the marine annelid Platynereis dumerilli. WJ Gillis B Bowerman SQ Schneider, Evolution & Development 2007 9 1 39 50 17227365
3. Molecular evolution of the GATA family of transcription factors: Conservation within the DNA-binding domain. JA Lowry WR Atchley, J Mol Evol 2000 50 2 103 115 10684344
4. The gene serpent has homeotic properties and specifies endoderm versus ectoderm within the Drosophila gut. R Reuter, Development 1994 120 5 1123 1135 7913013
5. A molecular aspect of hematopoiesis and endoderm development common to vertebrates and Drosophila. KP Rehorn H Thelen AM Michelson R Reuter, Development 1996 122 12 4023 4031 9012522
6. Two isoforms of Serpent containing either one or two GATA zinc fingers have different roles in Drosophila haematopoiesis. L Waltzer L Bataillé S Peyrefitte M Haenlin, The EMBO Journal 2002 21 5477 5486 12374748 10.1093/emboj/cdf545
7. Med-type GATA factors and the evolution of mesendoderm specification in nematodes. C Coroian G Broitman-Maduro MF Maduro, Dev Biol 2006 289 2 444 455 10.1016/j.ydbio.2005.10.024 16325171
8. Developmental expression of foxA and gata genes during gut formation in the polychaete annelid, Capitella sp. I. MJ Boyle EC Seaver, Evolution & Development 2008 10 1 89 105 18184360
9. Baylor College of Medicine Human Genome Sequencing Center. ftp://ftp.hgsc.bcm.tmc.edu/
10. VectorBase: a home for invertebrate vectors of human pathogens. D Lawson P Arensburger P Atkinson NJ Besansky RV Bruggner R Butler KS Campbell GK Christophides S Christley E Dialynas D Emmert M Hammond CA Hill RC Kennedy NF Lobo MR MacCallum G Madey K Megy S Redmond S Russo DW Severson EO Stinson P Topalis EM Zdobnov E Birney WM Gelbart FC Kafatos C Louis FH Collins, Nucl Acids Res 2007 35 D503 505 10.1093/nar/gkl960 17145709
11. DOE Joint Genome Institute. http://www.jgi.doe.gov/
12. Genome Sequencing Center at Washington University School of Medicine in St. Louis. ftp://genome.wustl.edu/
13. Tracembler - software for in-silico chromosome walking in unassembled genomes. Q Dong M Wilkerson V Brendel, BMC Bioinformatics 2007 8 1 151 17490482 10.1186/1471-2105-8-151
14. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. J D Thompson D G Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 7984417 10.1093/nar/22.22.4673
15. A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. S Guindon O Gascuel, Systematic Biology Taylor & Francis 2003 52 5 696 6704 10.1080/10635150390235520 14530136
16. Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative. M Anisimova O Gascuel, Systematic Biology Taylor & Francis 2006 55 4 539 5552 10.1080/10635150600755453 16785212
17. MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 8 754 755 10.1093/bioinformatics/17.8.754 11524383
18. MacVector. Integrated sequence analysis for the Macintosh. PA Rastogi, Methods Mol Biol Campbell, CA, USA., Oxford Molecular Group 2000 132 47 69 10547831
19. Insights into social insects from the genome of the honeybee Apis mellifera. THG Sequencing Consortium, Nature 2006 444 7118 512 10.1038/nature05400
20. Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. H Philippe N Lartillot H Brinkmann, Mol Biol Evol 2005 22 5 1246 1253 10.1093/molbev/msi111 15703236
21. An Insect Molecular Clock Dates the Origin of the Insects and Accords with Palaeontological and Biogeographic Landmarks. MW Gaunt MA Miles, Mol Biol Evol 2002 19 5 748 761 11961108