메뉴 건너뛰기




Volumn 371, Issue 3, 2008, Pages 451-455

Diastereomer characterizations of nitroxide-labeled nucleic acids

Author keywords

Diastereomer; DNA; Phosphorothioate; RNA; Site directed spin labeling

Indexed keywords

DNA OLIGONUCLEOTIDE; NITROXIDE; NUCLEIC ACID; RNA OLIGONUCLEOTIDE;

EID: 43549110905     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2008.04.088     Document Type: Article
Times cited : (26)

References (29)
  • 1
    • 0024974071 scopus 로고
    • Structural studies on transmembrane proteins. 2. Spin labeling of bacteriorhodopsin mutants at unique cysteines
    • Altenbach C., Flitsch S.L., Khorana H.G., and Hubbell W.L. Structural studies on transmembrane proteins. 2. Spin labeling of bacteriorhodopsin mutants at unique cysteines. Biochemistry 28 (1989) 7806-7812
    • (1989) Biochemistry , vol.28 , pp. 7806-7812
    • Altenbach, C.1    Flitsch, S.L.2    Khorana, H.G.3    Hubbell, W.L.4
  • 2
    • 2942577733 scopus 로고    scopus 로고
    • Application of NMR and EPR methods to the study of RNA
    • Qin P.Z., and Dieckmann T. Application of NMR and EPR methods to the study of RNA. Curr. Opin. Struct. Biol. 14 (2004) 350-359
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 350-359
    • Qin, P.Z.1    Dieckmann, T.2
  • 3
    • 53049087579 scopus 로고    scopus 로고
    • G.Z. Sowa, and P.Z. Qin, Site-directed spin labeling studies on nucleic acid structure and dynamics. Prog. Nucleic Acids Res. Mol. Biol. 82 (2008), in press.
    • G.Z. Sowa, and P.Z. Qin, Site-directed spin labeling studies on nucleic acid structure and dynamics. Prog. Nucleic Acids Res. Mol. Biol. 82 (2008), in press.
  • 6
    • 3042690165 scopus 로고    scopus 로고
    • Measurement of large distances in biomolecules using double-quantum filtered refocused electron spin-echoes
    • Borbat P.P., Davis J.H., Butcher S.E., and Freed J.H. Measurement of large distances in biomolecules using double-quantum filtered refocused electron spin-echoes. J. Am. Chem. Soc. 126 (2004) 7746-7747
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 7746-7747
    • Borbat, P.P.1    Davis, J.H.2    Butcher, S.E.3    Freed, J.H.4
  • 8
    • 34548729760 scopus 로고    scopus 로고
    • Nanometer distance measurements in RNA using site-directed spin labeling
    • Cai Q., Kusnetzow A.K., Hideg K., Price E.A., Haworth I.S., and Qin P.Z. Nanometer distance measurements in RNA using site-directed spin labeling. Biophys. J. 93 (2007) 2110-2117
    • (2007) Biophys. J. , vol.93 , pp. 2110-2117
    • Cai, Q.1    Kusnetzow, A.K.2    Hideg, K.3    Price, E.A.4    Haworth, I.S.5    Qin, P.Z.6
  • 10
    • 37549043979 scopus 로고    scopus 로고
    • Distance determination in heterogeneous DNA model systems by pulsed EPR
    • Ward R., Keeble D.J., El-Mkami H., and Norman D.G. Distance determination in heterogeneous DNA model systems by pulsed EPR. ChemBioChem 8 (2007) 1957-1964
    • (2007) ChemBioChem , vol.8 , pp. 1957-1964
    • Ward, R.1    Keeble, D.J.2    El-Mkami, H.3    Norman, D.G.4
  • 12
    • 0002367570 scopus 로고    scopus 로고
    • Spin-labeled nucleic acids
    • Berliner L.J. (Ed), Plenum Press, New York
    • Keyes R.S., and Bobst A.M. Spin-labeled nucleic acids. In: Berliner L.J. (Ed). Biological Magnetic Resonance (1998), Plenum Press, New York 283-338
    • (1998) Biological Magnetic Resonance , pp. 283-338
    • Keyes, R.S.1    Bobst, A.M.2
  • 13
    • 0035925208 scopus 로고    scopus 로고
    • Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA. Structure-dependent dynamics of RNA by EPR spectroscopy
    • Edwards T.E., Okonogi T.M., Robinson B.H., and Sigurdsson S.T. Site-specific incorporation of nitroxide spin-labels into internal sites of the TAR RNA. Structure-dependent dynamics of RNA by EPR spectroscopy. J. Am. Chem. Soc. 123 (2001) 1527-1528
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 1527-1528
    • Edwards, T.E.1    Okonogi, T.M.2    Robinson, B.H.3    Sigurdsson, S.T.4
  • 14
    • 0037984764 scopus 로고    scopus 로고
    • Monitoring RNA base structure and dynamics using site-directed spin labeling
    • Qin P.Z., Hideg K., Feigon J., and Hubbell W.L. Monitoring RNA base structure and dynamics using site-directed spin labeling. Biochemistry 42 (2003) 6772-6783
    • (2003) Biochemistry , vol.42 , pp. 6772-6783
    • Qin, P.Z.1    Hideg, K.2    Feigon, J.3    Hubbell, W.L.4
  • 15
    • 33645098003 scopus 로고    scopus 로고
    • A model system for investigating lineshape/structure correlations in RNA site-directed spin labeling
    • Qin P.Z., Jennifer I., and Oki A. A model system for investigating lineshape/structure correlations in RNA site-directed spin labeling. Biochem. Biophys. Res. Commun. 343 (2006) 117-124
    • (2006) Biochem. Biophys. Res. Commun. , vol.343 , pp. 117-124
    • Qin, P.Z.1    Jennifer, I.2    Oki, A.3
  • 16
    • 26844503355 scopus 로고    scopus 로고
    • Separate metal requirements for loop interactions and catalysis in the extended hammerhead ribozyme
    • Kim N.K., Murali A., and DeRose V.J. Separate metal requirements for loop interactions and catalysis in the extended hammerhead ribozyme. J. Am. Chem. Soc. 127 (2005) 14134-14135
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 14134-14135
    • Kim, N.K.1    Murali, A.2    DeRose, V.J.3
  • 17
    • 25444481543 scopus 로고    scopus 로고
    • EPR spectroscopic analysis of U7 hammerhead ribozyme dynamics during metal ion induced folding
    • Edwards T.E., and Sigurdsson S.T. EPR spectroscopic analysis of U7 hammerhead ribozyme dynamics during metal ion induced folding. Biochemistry 44 (2005) 12870-12878
    • (2005) Biochemistry , vol.44 , pp. 12870-12878
    • Edwards, T.E.1    Sigurdsson, S.T.2
  • 19
    • 0035849534 scopus 로고    scopus 로고
    • Quantitative analysis of the GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study
    • Qin P.Z., Butcher S.E., Feigon J., and Hubbell W.L. Quantitative analysis of the GAAA tetraloop/receptor interaction in solution: a site-directed spin labeling study. Biochemistry 40 (2001) 6929-6936
    • (2001) Biochemistry , vol.40 , pp. 6929-6936
    • Qin, P.Z.1    Butcher, S.E.2    Feigon, J.3    Hubbell, W.L.4
  • 21
    • 34548628407 scopus 로고    scopus 로고
    • Computation of nitroxide-nitroxide distances for spin-labeled DNA duplexes
    • Price E.A., Sutch B.T., Cai Q., Qin P.Z., and Haworth I.S. Computation of nitroxide-nitroxide distances for spin-labeled DNA duplexes. Biopolymers 87 (2007) 40-50
    • (2007) Biopolymers , vol.87 , pp. 40-50
    • Price, E.A.1    Sutch, B.T.2    Cai, Q.3    Qin, P.Z.4    Haworth, I.S.5
  • 22
    • 0026102040 scopus 로고
    • Configurationally defined phosphorothioate-containing oligonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes
    • Slim G., and Gait M.J. Configurationally defined phosphorothioate-containing oligonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes. Nucleic Acids Res. 19 (1991) 1183-1188
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1183-1188
    • Slim, G.1    Gait, M.J.2
  • 23
    • 0021148470 scopus 로고
    • Automated solid-phase synthesis, separation, and stereochemistry of phosphorothioate analogues of oligodeoxyribonucleotides
    • Stec W.J., Zon G., Egan W., and Stec B. Automated solid-phase synthesis, separation, and stereochemistry of phosphorothioate analogues of oligodeoxyribonucleotides. J. Am. Chem. Soc. 106 (1984) 6077-6079
    • (1984) J. Am. Chem. Soc. , vol.106 , pp. 6077-6079
    • Stec, W.J.1    Zon, G.2    Egan, W.3    Stec, B.4
  • 24
    • 0022428810 scopus 로고
    • Reversed-phase high performance liquid chromatography separation of diastereomeric phosphorothiaote analogues of oligodeoxyribonucleotide and other backbone-modified congeners of DNA
    • Stec W.J., Zon G., and Uznanski B. Reversed-phase high performance liquid chromatography separation of diastereomeric phosphorothiaote analogues of oligodeoxyribonucleotide and other backbone-modified congeners of DNA. J. Chromatogr. 326 (1985) 263-280
    • (1985) J. Chromatogr. , vol.326 , pp. 263-280
    • Stec, W.J.1    Zon, G.2    Uznanski, B.3
  • 25
    • 0007509789 scopus 로고
    • Absolute configuration of the diastereomers of adenosine 5′-O-(1-thiotriphosphate): consequences for the stereochemistry of polymerization by DNA-dependent RNA polymerase from Escherichia coli
    • Burgers P.M.J., and Eckstein F. Absolute configuration of the diastereomers of adenosine 5′-O-(1-thiotriphosphate): consequences for the stereochemistry of polymerization by DNA-dependent RNA polymerase from Escherichia coli. Proc. Natl. Acad. Sci. USA 75 (1978) 4798-4800
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4798-4800
    • Burgers, P.M.J.1    Eckstein, F.2
  • 26
    • 0020536591 scopus 로고
    • Synthesis and configurational analysis of a dinucleoside phosphate isotopically chiral at phosphorus. Stereochemical course of Penicillium citrum nuclease P1 reaction
    • Potter B.V.L., Connolly B.A., and Eckstein F. Synthesis and configurational analysis of a dinucleoside phosphate isotopically chiral at phosphorus. Stereochemical course of Penicillium citrum nuclease P1 reaction. Biochemistry 22 (1983) 1369-1377
    • (1983) Biochemistry , vol.22 , pp. 1369-1377
    • Potter, B.V.L.1    Connolly, B.A.2    Eckstein, F.3
  • 27
    • 0018801262 scopus 로고
    • Stereochemistry of hydrolysis by snake venom phosphodiesterase
    • Burgers P.M.J., Eckstein F., and Hunneman D.H. Stereochemistry of hydrolysis by snake venom phosphodiesterase. J. Biol. Chem. 254 (1979) 7476-7478
    • (1979) J. Biol. Chem. , vol.254 , pp. 7476-7478
    • Burgers, P.M.J.1    Eckstein, F.2    Hunneman, D.H.3
  • 28
    • 0024576679 scopus 로고
    • Isocratic reversed-phase high-performance liquid chromatography of ribonucleotides, deoxynucleotides, cyclic nucleotides and deoxycyclic nucleotides
    • Lim C.K., and Peters T.J. Isocratic reversed-phase high-performance liquid chromatography of ribonucleotides, deoxynucleotides, cyclic nucleotides and deoxycyclic nucleotides. J. Chromatogr. 461 (1989) 259-266
    • (1989) J. Chromatogr. , vol.461 , pp. 259-266
    • Lim, C.K.1    Peters, T.J.2
  • 29
    • 0033572734 scopus 로고    scopus 로고
    • An NMR and molecular modeling analysis of d(CTACTGCTTTAG). d(CTAAAGCAGTAG) reveals that the particular behavior of TpA steps is related to edge-to-edge contacts of their base-pairs in the major groove
    • Leporc S., Mauffret O., Tevanian G., Lescot E., Monnot M., and Fermandjian S. An NMR and molecular modeling analysis of d(CTACTGCTTTAG). d(CTAAAGCAGTAG) reveals that the particular behavior of TpA steps is related to edge-to-edge contacts of their base-pairs in the major groove. Nucleic Acids Res. 27 (1999) 4759-4767
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4759-4767
    • Leporc, S.1    Mauffret, O.2    Tevanian, G.3    Lescot, E.4    Monnot, M.5    Fermandjian, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.