-
1
-
-
2542514671
-
Paradigms for computational nucleic acid design
-
Dirks,R.M., Lin,M., Winfree,E. and Pierce,N.A. (2004) Paradigms for computational nucleic acid design. Nucleic Acids Res., 32, 1392-1403.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1392-1403
-
-
Dirks, R.M.1
Lin, M.2
Winfree, E.3
Pierce, N.A.4
-
2
-
-
0034881299
-
Calculating sequence-dependent melting stability of duplex DNA oligomers and multiplex sequence analysis by graphs
-
Benight,A.S., Pancoska,P., Owczarzy,R., Vallone,P.M., Nesetril,J. and Riccelli,P.V. (2001) Calculating sequence-dependent melting stability of duplex DNA oligomers and multiplex sequence analysis by graphs. Methods Enzymol., 340, 165-192.
-
(2001)
Methods Enzymol.
, vol.340
, pp. 165-192
-
-
Benight, A.S.1
Pancoska, P.2
Owczarzy, R.3
Vallone, P.M.4
Nesetril, J.5
Riccelli, P.V.6
-
3
-
-
0025925206
-
Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs
-
SantaLucia,J.,Jr, Kierzek,R. and Turner,D.H. (1991) Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: evidence for stable hydrogen-bonded U.U and C.C.+ pairs. Biochemistry, 30, 8242-8251.
-
(1991)
Biochemistry
, vol.30
, pp. 8242-8251
-
-
Santa Lucia Jr., J.1
Kierzek, R.2
Turner, D.H.3
-
4
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
SantaLucia,J.,Jr, Allawi,H.T. and Seneviratne,P.A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
Santa Lucia Jr., J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
5
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia,T., SantaLucia,J.,Jr, Burkard,M.E., Kierzek,R., Schroeder,S.J., Jiao,X., Cox,C. and Turner,D.H. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry, 37, 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
Santa Lucia Jr., J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
Jiao, X.6
Cox, C.7
Turner, D.H.8
-
6
-
-
0032581024
-
Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: Sequence dependence and pH effects
-
Allawi,H.T. and SantaLucia,J.,Jr (1998) Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry, 37, 9435-9444.
-
(1998)
Biochemistry
, vol.37
, pp. 9435-9444
-
-
Allawi, H.T.1
Santa Lucia Jr., J.2
-
7
-
-
0032499633
-
Effect of mismatched complementary strands and 5′-change in sequence context on the thermodynamics and structure of benzo[a]pyrene-modified oligonucleotides
-
Arghavani,M.B., SantaLucia,J.,Jr and Romano,L.J. (1998) Effect of mismatched complementary strands and 5′-change in sequence context on the thermodynamics and structure of benzo[a]pyrene-modified oligonucleotides. Biochemistry, 37, 8575-8583.
-
(1998)
Biochemistry
, vol.37
, pp. 8575-8583
-
-
Arghavani, M.B.1
Santa Lucia Jr., J.2
Romano, L.J.3
-
8
-
-
0032102940
-
Thermodynamics of internal C.T mismatches in DNA
-
Allawi,H.T. and SantaLucia,J.,Jr (I 998) Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res., 26, 2694-2701.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2694-2701
-
-
Allawi, H.T.1
Santa Lucia Jr., J.2
-
9
-
-
0032562140
-
Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA
-
Allawi,H.T. and SantaLucia,J.,Jr (1998) Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA. Biochemistry, 37, 2170-2179.
-
(1998)
Biochemistry
, vol.37
, pp. 2170-2179
-
-
Allawi, H.T.1
Santa Lucia Jr., J.2
-
10
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia,J.,Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
Santa Lucia Jr., J.1
-
11
-
-
0033596964
-
Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches
-
Peyret,N., Seneviratne,P.A., Allawi,H.T. and SantaLucia,J.,Jr (1999) Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry, 38, 3468-3477.
-
(1999)
Biochemistry
, vol.38
, pp. 3468-3477
-
-
Peyret, N.1
Seneviratne, P.A.2
Allawi, H.T.3
Santa Lucia Jr., J.4
-
12
-
-
0034194135
-
Thermodynamic parameters for DNA sequences with dangling ends
-
Bommarito,S., Peyret,N. and SantaLucia,J.,Jr (2000) Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res., 28, 1929-1934.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1929-1934
-
-
Bommarito, S.1
Peyret, N.2
Santa Lucia Jr., J.3
-
13
-
-
0038239283
-
OligoArray 2.0: Design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
-
Rouillard,J.M., Zuker,M. and Gulari,E. (2003) OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res., 31, 3057-3062.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3057-3062
-
-
Rouillard, J.M.1
Zuker, M.2
Gulari, E.3
-
14
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
15
-
-
0034070995
-
Calculating nucleic acid secondary structure
-
Zuker,M. (2000) Calculating nucleic acid secondary structure. Curr. Opin. Struct. Biol., 10, 303-310.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 303-310
-
-
Zuker, M.1
-
16
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews,D.H., Sabina,J., Zuker,M. and Turner,D.H. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
17
-
-
0031745782
-
Using reliability information to annotate RNA secondary structures
-
Zuker,M. and Jacobson,A.B. (1998) Using reliability information to annotate RNA secondary structures. RNA, 4, 669-679.
-
(1998)
RNA
, vol.4
, pp. 669-679
-
-
Zuker, M.1
Jacobson, A.B.2
-
18
-
-
0036405278
-
DNA microarray technology: Devices, systems, and applications
-
Heller,M.J. (2002) DNA microarray technology: devices, systems, and applications. Annu. Rev. Biomed. Eng., 4, 129-153.
-
(2002)
Annu. Rev. Biomed. Eng.
, vol.4
, pp. 129-153
-
-
Heller, M.J.1
-
19
-
-
0034659448
-
An algorithm for clustering cDNA fingerprints
-
Hartuv,E., Schmitt,A.O., Lange,J., Meier-Ewert,S., Lehrach,H. and Shamir,R. (2000) An algorithm for clustering cDNA fingerprints. Genomics, 66, 249-256.
-
(2000)
Genomics
, vol.66
, pp. 249-256
-
-
Hartuv, E.1
Schmitt, A.O.2
Lange, J.3
Meier-Ewert, S.4
Lehrach, H.5
Shamir, R.6
-
20
-
-
0036956423
-
Fingerprinting closely related Xanthomonas pathovars with random nonamer oligonucleotide microarrays
-
Kingsley,M.T., Straub,T.A., Call,D.R., Daly,D.S., Wunschel,S.C. and Chandler,D.P. (2002) Fingerprinting closely related Xanthomonas pathovars with random nonamer oligonucleotide microarrays. Appl. Environ. Microbiol., 68, 6361-6370.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 6361-6370
-
-
Kingsley, M.T.1
Straub, T.A.2
Call, D.R.3
Daly, D.S.4
Wunschel, S.C.5
Chandler, D.P.6
-
21
-
-
2342641426
-
A gene-specific DNA sequencing chip for exploring molecular evolutionary change
-
Fedrigo,O. and Naylor,G. (2004) A gene-specific DNA sequencing chip for exploring molecular evolutionary change. Nucleic Acids Res., 32, 1208-1213.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1208-1213
-
-
Fedrigo, O.1
Naylor, G.2
-
22
-
-
0842265697
-
Clinical evaluation of the COBAS Amplicor HBV monitor test for measuring serum HBV DNA and comparison with the Quantiplex branched DNA signal amplification assay in Taiwan
-
Dai,C.Y., Yu,M.L., Chen,S.C., Lin,Z.Y., Hsieh,M.Y., Wang,L.Y., Tsai,J.F., Chuang,W.L. and Chang,W.Y. (2004) Clinical evaluation of the COBAS Amplicor HBV monitor test for measuring serum HBV DNA and comparison with the Quantiplex branched DNA signal amplification assay in Taiwan. J. Clin. Pathol., 57, 141-145.
-
(2004)
J. Clin. Pathol.
, vol.57
, pp. 141-145
-
-
Dai, C.Y.1
Yu, M.L.2
Chen, S.C.3
Lin, Z.Y.4
Hsieh, M.Y.5
Wang, L.Y.6
Tsai, J.F.7
Chuang, W.L.8
Chang, W.Y.9
-
23
-
-
0345831996
-
Strengths and limitations of commercial tests for hepatitis C virus RNA quantification
-
Morishima,C., Chung,M., Ng,K.W., Brambilla,D.J. and Gretch,D.R. (2004) Strengths and limitations of commercial tests for hepatitis C virus RNA quantification. J. Clin. Microbiol., 42, 421-425.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 421-425
-
-
Morishima, C.1
Chung, M.2
Ng, K.W.3
Brambilla, D.J.4
Gretch, D.R.5
-
24
-
-
0035184770
-
High-throughput variation detection and genotyping using microarrays
-
Cutler,D.J., Zwick,M.E., Carrasquillo,M.M., Yohn,C.T., Tobin,K.P., Kashuk,C., Mathews,D.J., Shah,N.A., Eichler,E.E., Warrington,J.A. et al. (2001) High-throughput variation detection and genotyping using microarrays. Genome Res., 11, 1913-1925.
-
(2001)
Genome Res.
, vol.11
, pp. 1913-1925
-
-
Cutler, D.J.1
Zwick, M.E.2
Carrasquillo, M.M.3
Yohn, C.T.4
Tobin, K.P.5
Kashuk, C.6
Mathews, D.J.7
Shah, N.A.8
Eichler, E.E.9
Warrington, J.A.10
-
25
-
-
0036012373
-
Rational statistical design of antisense oligonucleotides for high throughput functional genomics and drug target validation
-
Ding,Y. (2002) Rational statistical design of antisense oligonucleotides for high throughput functional genomics and drug target validation. Statist. Sin., 12, 273-296.
-
(2002)
Statist. Sin.
, vol.12
, pp. 273-296
-
-
Ding, Y.1
-
26
-
-
1342263843
-
Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
-
Lee,I., Dombkowski,A.A. and Athey,B.D. (2004) Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray. Nucleic Acids Res., 32, 681-690.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 681-690
-
-
Lee, I.1
Dombkowski, A.A.2
Athey, B.D.3
-
27
-
-
0242521682
-
Set association analysis of SNP case-control and microarray data
-
Ott,J. and Hoh,J. (2003) Set association analysis of SNP case-control and microarray data. J. Comput. Biol., 10, 569-574.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 569-574
-
-
Ott, J.1
Hoh, J.2
-
28
-
-
0041386130
-
Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA
-
DeSantis,T.Z., Dubosarskiy,I., Murray,S.R. and Andersen,G.L. (2003) Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA. Bioinformatics, 19, 1461-1468.
-
(2003)
Bioinformatics
, vol.19
, pp. 1461-1468
-
-
DeSantis, T.Z.1
Dubosarskiy, I.2
Murray, S.R.3
Andersen, G.L.4
-
29
-
-
0043123142
-
Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays
-
Nielsen,H.B., Wernersson,R. and Knudsen,S. (2003) Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays. Nucleic Acids Res., 31, 3491-3496.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3491-3496
-
-
Nielsen, H.B.1
Wernersson, R.2
Knudsen, S.3
-
30
-
-
0037620665
-
Reconstructing the temporal ordering of biological samples using microarray data
-
Magwene,P.M., Lizardi,P. and Kim,J. (2003) Reconstructing the temporal ordering of biological samples using microarray data. Bioinformatics, 19, 842-850.
-
(2003)
Bioinformatics
, vol.19
, pp. 842-850
-
-
Magwene, P.M.1
Lizardi, P.2
Kim, J.3
-
31
-
-
0025804117
-
Synthesis from DNA of a molecule with the connectivity of a cube
-
Chen,J.H. and Seeman,N.C. (1991) Synthesis from DNA of a molecule with the connectivity of a cube. Nature, 350, 631-633.
-
(1991)
Nature
, vol.350
, pp. 631-633
-
-
Chen, J.H.1
Seeman, N.C.2
-
32
-
-
0031983046
-
DNA as a vehicle for the self-assembly model of computing
-
Conrad,M. and Zauner,K.P. (1998) DNA as a vehicle for the self-assembly model of computing. Biosystems, 45, 59-66.
-
(1998)
Biosystems
, vol.45
, pp. 59-66
-
-
Conrad, M.1
Zauner, K.P.2
-
33
-
-
0035666705
-
Biomolecular electronics in the twenty-first century
-
Phadke,R.S. (2001) Biomolecular electronics in the twenty-first century. Appl. Biochem. Biotechnol., 96, 269-276.
-
(2001)
Appl. Biochem. Biotechnol.
, vol.96
, pp. 269-276
-
-
Phadke, R.S.1
-
34
-
-
0025900334
-
Construction of three-dimensional stick figures from branched DNA
-
Seeman,N.C. (1991) Construction of three-dimensional stick figures from branched DNA. DNA Cell Biol., 10, 475-486.
-
(1991)
DNA Cell Biol.
, vol.10
, pp. 475-486
-
-
Seeman, N.C.1
-
35
-
-
0032860161
-
DNA engineering and its application to nanotechnology
-
Seeman,N.C. (1999) DNA engineering and its application to nanotechnology. Trends Biotechnol., 17, 437-443.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 437-443
-
-
Seeman, N.C.1
-
36
-
-
0032490948
-
Design and self-assembly of two-dimensional DNA crystals
-
Winfree,E., Liu,F., Wenzler,L.A. and Seeman,N.C. (1998) Design and self-assembly of two-dimensional DNA crystals. Nature, 394, 539-544.
-
(1998)
Nature
, vol.394
, pp. 539-544
-
-
Winfree, E.1
Liu, F.2
Wenzler, L.A.3
Seeman, N.C.4
-
38
-
-
0037683090
-
DNA library design for molecular computation
-
Penchovsky,R. and Ackermann,J. (2003) DNA library design for molecular computation. J. Comput. Biol., 10, 215-229.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 215-229
-
-
Penchovsky, R.1
Ackermann, J.2
-
39
-
-
0037333788
-
Molecular computing revisited: A Moore's law?
-
Livstone,M.S., van Noort,D. and Landweber,L.F. (2003) Molecular computing revisited: a Moore's law? Trends Biotechnol., 21, 98-101.
-
(2003)
Trends Biotechnol.
, vol.21
, pp. 98-101
-
-
Livstone, M.S.1
van Noort, D.2
Landweber, L.F.3
-
40
-
-
0037448493
-
Theoretical studies of mixed-valence transition metal complexes for molecular computing
-
Braun-Sand,S.B. and Wiest,O. (2003) Theoretical studies of mixed-valence transition metal complexes for molecular computing. J. Phys. Chem. A, 107, 285-291.
-
(2003)
J. Phys. Chem. A.
, vol.107
, pp. 285-291
-
-
Braun-Sand, S.B.1
Wiest, O.2
-
41
-
-
0344838435
-
DNA molecule provides a computing machine with both data and fuel
-
Benenson,Y., Adar,R., Paz-Elizur,T., Livneh,Z. and Shapiro,E. (2003) DNA molecule provides a computing machine with both data and fuel. Proc. Natl Acad. Sci. USA, 100, 2191-2196.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 2191-2196
-
-
Benenson, Y.1
Adar, R.2
Paz-Elizur, T.3
Livneh, Z.4
Shapiro, E.5
-
42
-
-
0037090941
-
Efficient DNA sticker algorithms for NP-complete graph problems
-
Zimmermann,K.H. (2002) Efficient DNA sticker algorithms for NP-complete graph problems. Comput. Phys. Commun., 144, 297-309.
-
(2002)
Comput. Phys. Commun.
, vol.144
, pp. 297-309
-
-
Zimmermann, K.H.1
-
43
-
-
0036489452
-
A Chinese Postman Problem based on DNA computing
-
Yin,Z., Zhang,F. and Xu,J. (2002) A Chinese Postman Problem based on DNA computing. J. Chem. Inf. Comput. Sci., 42, 222-224.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 222-224
-
-
Yin, Z.1
Zhang, F.2
Xu, J.3
-
44
-
-
0141835782
-
DNA computing of bipartite graphs for maximum matching
-
Wang,S.Y. (2002) DNA computing of bipartite graphs for maximum matching. J. Math. Chem., 31, 271-279.
-
(2002)
J. Math. Chem.
, vol.31
, pp. 271-279
-
-
Wang, S.Y.1
-
45
-
-
0042038747
-
Nanocell logic gates for molecular computing
-
Tour,J.M., Van Zandt,W.L., Husband,C.P., Husband,S.M., Wilson,L.S., Franzon,P.D. and Nackashi,D.P. (2002) Nanocell logic gates for molecular computing. IEEE Trans. Nanotechnol., 1, 100-109.
-
(2002)
IEEE Trans. Nanotechnol.
, vol.1
, pp. 100-109
-
-
Tour, J.M.1
Van Zandt, W.L.2
Husband, C.P.3
Husband, S.M.4
Wilson, L.S.5
Franzon, P.D.6
Nackashi, D.P.7
-
46
-
-
0036062286
-
Models of molecular computing based on molecular reactions
-
Rozenberg,G. (2002) Models of molecular computing based on molecular reactions. New Generation Comput., 20, 237-249.
-
(2002)
New Generation Comput.
, vol.20
, pp. 237-249
-
-
Rozenberg, G.1
-
47
-
-
0037039861
-
Molecular computing - DNA-based computer takes aim at genes
-
Normile,D. (2002) Molecular computing - DNA-based computer takes aim at genes. Science, 295, 951.
-
(2002)
Science
, vol.295
, pp. 951
-
-
Normile, D.1
-
48
-
-
0036557843
-
DNA solution of a graph coloring problem
-
Liu,Y.C., Xu,J., Pan,L.Q. and Wang,S.Y. (2002) DNA solution of a graph coloring problem. J. Chem. Inform. Comput. Sci., 42, 524-528.
-
(2002)
J. Chem. Inform. Comput. Sci.
, vol.42
, pp. 524-528
-
-
Liu, Y.C.1
Xu, J.2
Pan, L.Q.3
Wang, S.Y.4
-
49
-
-
0037051039
-
Computation with DNA on surfaces
-
Gillmor,S.D., Rugheimer,P.P. and Lagally,M.G. (2002) Computation with DNA on surfaces. Surface Sci., 500, 699-721.
-
(2002)
Surface Sci.
, vol.500
, pp. 699-721
-
-
Gillmor, S.D.1
Rugheimer, P.P.2
Lagally, M.G.3
-
50
-
-
0037174197
-
Topics in the theory of DNA computing
-
Amos,M., Paun,G., Rozenberg,G. and Salomaa,A.T. (2002) Topics in the theory of DNA computing. Theoret. Comput. Sci., 287, 3-38.
-
(2002)
Theoret. Comput. Sci.
, vol.287
, pp. 3-38
-
-
Amos, M.1
Paun, G.2
Rozenberg, G.3
Salomaa, A.T.4
-
51
-
-
0035053070
-
From cells to computers: Computing with membranes (P systems)
-
Paun,G. (2001) From cells to computers: computing with membranes (P systems). Biosystems, 59, 139-158.
-
(2001)
Biosystems
, vol.59
, pp. 139-158
-
-
Paun, G.1
-
52
-
-
0034815032
-
Biomolecular realizations of a parallel architecture for solving combinatorial problems
-
Head,T. (2001) Biomolecular realizations of a parallel architecture for solving combinatorial problems. New Generation Comput., 19, 301-312.
-
(2001)
New Generation Comput.
, vol.19
, pp. 301-312
-
-
Head, T.1
-
53
-
-
0034904786
-
Communication, molecular computing and randomized algorithms - Foreword
-
Freivalds,R., Hromkovic,J., Paun,G. and Unger,W. (2001) Communication, molecular computing and randomized algorithms - Foreword. Theoret. Comput. Sci., 264, 1-2.
-
(2001)
Theoret. Comput. Sci.
, vol.264
, pp. 1-2
-
-
Freivalds, R.1
Hromkovic, J.2
Paun, G.3
Unger, W.4
-
54
-
-
0034175264
-
The inference based on molecular computing
-
Wasiewicz,P., Janczak,T., Mulawka,J.J. and Plucienniczak,A. (2000) The inference based on molecular computing. Cybernet. Syst., 31, 283-315.
-
(2000)
Cybernet. Syst.
, vol.31
, pp. 283-315
-
-
Wasiewicz, P.1
Janczak, T.2
Mulawka, J.J.3
Plucienniczak, A.4
-
55
-
-
0034681212
-
Molecular computing-RNA works out knight moves
-
Seife,C. (2000) Molecular computing-RNA works out knight moves. Science, 287, 1182-1183.
-
(2000)
Science
, vol.287
, pp. 1182-1183
-
-
Seife, C.1
-
56
-
-
0034685812
-
Molecular computation by DNA hairpin formation
-
Sakamoto,K., Gouzu,H., Komiya,K., Kiga,D., Yokoyama,S., Yokomori,T. and Hagiya,M. (2000) Molecular computation by DNA hairpin formation. Science, 288, 1223-1226.
-
(2000)
Science
, vol.288
, pp. 1223-1226
-
-
Sakamoto, K.1
Gouzu, H.2
Komiya, K.3
Kiga, D.4
Yokoyama, S.5
Yokomori, T.6
Hagiya, M.7
-
57
-
-
0034305052
-
The past, present and future of molecular computing
-
Ruben,A.J. and Landweber,L.F. (2000) The past, present and future of molecular computing. Nature Rev. Mol. Cell Biol., 1, 69-72.
-
(2000)
Nature Rev. Mol. Cell Biol.
, vol.1
, pp. 69-72
-
-
Ruben, A.J.1
Landweber, L.F.2
-
58
-
-
0003350571
-
Molecular computing
-
Rotman,D. (2000) Molecular computing. Technol. Rev., 103, 5258.
-
(2000)
Technol. Rev.
, vol.103
, pp. 5258
-
-
Rotman, D.1
-
59
-
-
0034233178
-
Computing with DNA by operating on plasmids
-
Head,T., Rozenberg,G., Bladergroen,R.S., Breek,C.K., Lommerse,P.H. and Spaink,H.P. (2000) Computing with DNA by operating on plasmids. Biosystems, 57, 87-93.
-
(2000)
Biosystems
, vol.57
, pp. 87-93
-
-
Head, T.1
Rozenberg, G.2
Bladergroen, R.S.3
Breek, C.K.4
Lommerse, P.H.5
Spaink, H.P.6
-
60
-
-
0032607441
-
Perspectives on molecular computing
-
Hagiya,M. (1999) Perspectives on molecular computing. New Generation Comput., 17, 131-151.
-
(1999)
New Generation Comput.
, vol.17
, pp. 131-151
-
-
Hagiya, M.1
-
62
-
-
0346275777
-
DNA computing: A review
-
Deaton,R., Garzon,M., Rose,J., Franceschetti,D.R. and Stevens,S.E.,Jr (1999) DNA computing: a review. Fundamenta Informaticae, 35, 231-245.
-
(1999)
Fundamenta Informaticae
, vol.35
, pp. 231-245
-
-
Deaton, R.1
Garzon, M.2
Rose, J.3
Franceschetti, D.R.4
Stevens Jr., S.E.5
-
63
-
-
0000982897
-
Reliability and efficiency of a DNA-based computation
-
Deaton,R., Garzon,M., Murphy,R.C., Rose,J.A., Franceschetti,D.R. and Stevens,S.E. (1998) Reliability and efficiency of a DNA-based computation. Phys. Rev. Lett., 80, 417-420.
-
(1998)
Phys. Rev. Lett.
, vol.80
, pp. 417-420
-
-
Deaton, R.1
Garzon, M.2
Murphy, R.C.3
Rose, J.A.4
Franceschetti, D.R.5
Stevens, S.E.6
-
64
-
-
0034632783
-
A DNA-fuelled molecular machine made of DNA
-
Yurke,B., Turberfield,A.J., Mills,A.P.,Jr, Simmel,F.C. and Neumann,J.L. (2000) A DNA-fuelled molecular machine made of DNA. Nature, 406, 605-608.
-
(2000)
Nature
, vol.406
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.J.2
Mills Jr., A.P.3
Simmel, F.C.4
Neumann, J.L.5
-
65
-
-
0037463259
-
Design and test of noncrosshybridizing oligonucleotide building blocks for DNA computers and nanostructures
-
Deaton,R., Kim,J.W. and Chen,J. (2003) Design and test of noncrosshybridizing oligonucleotide building blocks for DNA computers and nanostructures. Appl. Phys. Lett., 82, 1305-1307.
-
(2003)
Appl. Phys. Lett.
, vol.82
, pp. 1305-1307
-
-
Deaton, R.1
Kim, J.W.2
Chen, J.3
-
66
-
-
0242380626
-
Thermodynamic calculations and statistical correlations for oligo-probes design
-
Matveeva,O.V., Shabalina,S.A., Nemtsov,V.A., Tsodikov,A.D., Gesteland,R.F. and Atkins,J.F. (2003) Thermodynamic calculations and statistical correlations for oligo-probes design. Nucleic Acids Res., 31, 4211-4217.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4211-4217
-
-
Matveeva, O.V.1
Shabalina, S.A.2
Nemtsov, V.A.3
Tsodikov, A.D.4
Gesteland, R.F.5
Atkins, J.F.6
-
68
-
-
0442297318
-
On some properties of DNA graphs
-
Blazewicz,J., Hertz,A., Kobler,D. and de Werra,D. (1999) On some properties of DNA graphs. Discrete Appl. Math., 98, 1-19.
-
(1999)
Discrete Appl. Math.
, vol.98
, pp. 1-19
-
-
Blazewicz, J.1
Hertz, A.2
Kobler, D.3
de Werra, D.4
-
69
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
Pevzner,P.A., Tang,H.X. and Waterman,M.S. (2001) An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci. USA, 98, 9748-9753.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
Tang, H.X.2
Waterman, M.S.3
-
70
-
-
0742304251
-
An Eulerian path approach to global multiple alignment for DNA sequences
-
Zhang,Y. and Waterman,M.S. (2003) An Eulerian path approach to global multiple alignment for DNA sequences. J. Comput. Biol., 10, 803-819.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 803-819
-
-
Zhang, Y.1
Waterman, M.S.2
-
71
-
-
0037460089
-
Block structure and stability of the genetic code
-
Chechetkin,V.R. (2003) Block structure and stability of the genetic code. J. Theoret. Biol., 222, 177-188.
-
(2003)
J. Theoret. Biol.
, vol.222
, pp. 177-188
-
-
Chechetkin, V.R.1
-
72
-
-
0035998864
-
Similarity among nucleotide sequences
-
Feng,S. and Zhongxi,M. (2002) Similarity among nucleotide sequences. Acta Biotheoret., 50, 95-99.
-
(2002)
Acta Biotheoret.
, vol.50
, pp. 95-99
-
-
Feng, S.1
Zhongxi, M.2
-
73
-
-
2542607603
-
Efficient RNA interference depends on global context of the target sequence. Quantitative analysis of silencing efficiency using Eulerian graph representation of siRNA
-
Pancoska,P., Moravek,Z. and Moll,U.M. (2004) Efficient RNA interference depends on global context of the target sequence. Quantitative analysis of silencing efficiency using Eulerian graph representation of siRNA. Nucleic Acids Res., 32, 1469-1479.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1469-1479
-
-
Pancoska, P.1
Moravek, Z.2
Moll, U.M.3
-
75
-
-
0037462116
-
Dynamics and energetics of single-step hole transport in DNA hairpins
-
Lewis,F.D., Liu,J., Zuo,X., Hayes,R.T. and Wasielewski,M.R. (2003) Dynamics and energetics of single-step hole transport in DNA hairpins. J. Am. Chem. Soc., 125, 4850-4861.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 4850-4861
-
-
Lewis, F.D.1
Liu, J.2
Zuo, X.3
Hayes, R.T.4
Wasielewski, M.R.5
-
76
-
-
0034058321
-
Long-range charge transfer in DNA: Transient structural distortions control the distance dependence
-
Schuster,G.B. (2000) Long-range charge transfer in DNA: transient structural distortions control the distance dependence. Acc. Chem. Res., 33, 253-260.
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 253-260
-
-
Schuster, G.B.1
-
77
-
-
1542377678
-
Mechanism for radical cation transport in duplex DNA oligonucleotides
-
Liu,C.S., Hernandez,R. and Schuster,G.B. (2004) Mechanism for radical cation transport in duplex DNA oligonucleotides. J. Am. Chem. Soc., 126, 2877-2884.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 2877-2884
-
-
Liu, C.S.1
Hernandez, R.2
Schuster, G.B.3
-
78
-
-
0034121447
-
Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2
-
Favis,R., Day,J., Gerry,N.P., Phelan,C., Narod,S. and Barany,F. (2000) Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat. Biotechnol., 18, 561-564.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 561-564
-
-
Favis, R.1
Day, J.2
Gerry, N.P.3
Phelan, C.4
Narod, S.5
Barany, F.6
-
79
-
-
0033578928
-
Universal DNA microarray method for multiplex detection of low abundance point mutations
-
Gerry,N.P., Witkowski,N.E., Day,J., Hammer,R.P., Barany,G. and Barany,F. (1999) Universal DNA microarray method for multiplex detection of low abundance point mutations. J. Mol. Biol., 292, 251-262.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 251-262
-
-
Gerry, N.P.1
Witkowski, N.E.2
Day, J.3
Hammer, R.P.4
Barany, G.5
Barany, F.6
-
80
-
-
11144354637
-
Expression profiling using a hexamer-based universal microarray
-
Roth,M.E., Feng,L., McConnell,K.J., Schaffer,P.J., Guerra,C.E., Affourtit,J.P., Piper,K.R., Guccione,L., Hariharan,J., Ford,M.J. et al. (2004) Expression profiling using a hexamer-based universal microarray. Nat. Biotechnol., 22, 418-426.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 418-426
-
-
Roth, M.E.1
Feng, L.2
McConnell, K.J.3
Schaffer, P.J.4
Guerra, C.E.5
Affourtit, J.P.6
Piper, K.R.7
Guccione, L.8
Hariharan, J.9
Ford, M.J.10
-
81
-
-
0036144917
-
Gene expression analysis with universal n-mer arrays
-
van Dam,R.M. and Quake,S.R. (2002) Gene expression analysis with universal n-mer arrays. Genome Res., 12, 145-152.
-
(2002)
Genome Res.
, vol.12
, pp. 145-152
-
-
van Dam, R.M.1
Quake, S.R.2
-
82
-
-
9144256665
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
-
(Database issue)
-
Christie,K.R., Weng,S., Balakrishnan,R., Costanzo,M.C., Dolinski,K., Dwight,S.S., Engel,S.R., Feierbach,B., Fisk,D.G., Hirschman,J.E. et al. (2004) Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res., 32 (Database issue), D311-D314.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Christie, K.R.1
Weng, S.2
Balakrishnan, R.3
Costanzo, M.C.4
Dolinski, K.5
Dwight, S.S.6
Engel, S.R.7
Feierbach, B.8
Fisk, D.G.9
Hirschman, J.E.10
-
83
-
-
0037433244
-
What controls the melting properties of DNA-linked gold nanoparticle assemblies?
-
Jin,R., Wu,G., Li,Z., Mirkin,C.A. and Schatz,G.C. (2003) What controls the melting properties of DNA-linked gold nanoparticle assemblies? J. Am. Chem. Soc., 125, 1643-1654.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1643-1654
-
-
Jin, R.1
Wu, G.2
Li, Z.3
Mirkin, C.A.4
Schatz, G.C.5
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