Modelling biological processes by using a probabilistic P system software

Natural Computing

Volumn 2, Issue 2, 2003, Pages 173-197

  Ardelean, Ioan I ^a   Cavaliere, Matteo ^b  

^a INSTITUTE OF BIOLOGY   (Romania)

^b UNIVERSITAT ROVIRA I VIRGILI   (Spain)

Author keywords

Bacteria; Membrane computing; Photosynthesis; Probability; Respiration; Software

Indexed keywords

ARTICLE; BACTERIAL METABOLISM; CELL RESPIRATION; COMPUTER MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; COMPUTER SYSTEM; CONTROLLED STUDY; CYTOLOGY; ESCHERICHIA COLI; MATHEMATICAL MODEL; NONHUMAN; PHOTOSYNTHESIS; PROBABILITY; SIMULATOR;

EID: 4344680283     PISSN: 15677818     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1024943605864     Document Type: Article

References (22)

1. Alberts B (1998) Essential Cell Biology. An Introduction to the Molecular Biology of the Cell. Garland Publ Inc, New York, London
2. Alexeeva S, Hellingwerf KJ and Teixeira de Mattos MJ (2002) Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli. Journal of Bacteriology 184: 1402-1406
3. Alexeeva S, de Kort B, Sawers G, Hellingwerf KJ and Teixeira de Mattos MJ (2000) Effects of limited aeration and of the ArcAB System on intermediary pyruvate catabolism in Escherichia coli. Journal of Bacteriology 182: 4934-4940
4. Ardelean I, Tunaru S, Flonta ML, Teodosiu G, Madalin E, Dumitru L and Zarnea G (1999) Increased respiratory activity in light in salt stressed Synechocystis. In: Peschek GA, Loffelhardt W and Schmetterer G (eds) The Phototrophic Prokaryotes, pp. 403-409. Plenum Publisher, New York
5. Ardelean I (2003) Molecular biology of bacteria and its relevance for P systems. In: Pǎun Gh, Rozenberg G, Salomaa A and Zandron C (eds) Membrane Computing 2002, pp. 1-18. Lecture Notes in Computer Science 2597, Springar-Verlag, Berlin
6. Booth IR (1988) Bacterial Energy Transduction. Academic Press, London
7. Cavaliere M (2003) Evolution-communication P systems. In: Pǎun Gh, Rozenberg G, Salomaa A and Zandron C (eds) Membrane Computing 2002, pp. 134-145. Lecture Notes in Computer Science 2597, Springer-Verlag, Berlin
8. Hall DO and Rao KK (1994) Photosynthesis. Cambridge University Press
9. Jung H (2001) Towards the molecular mechanism of Na/solute symport in Prokaryotes. Biochem Biophys Acta 1505: 131-143
10. Mayer E (1998) This is Biology - The Science of the Living World. The Belknap Press of the Harward University Press, Cambridge, Massachusetts
11. Miller SL and Orgel LE (1973) The Origin of Life on Earth. Englewood Clifs, Prentice Hall
12. Nicholls DG and Ferguson SJ (2002) Bioenergetics. Academic Press, London
13. Padan E, Venturi M, Gercham Y and Dover N (2001) Na/H antiporters. Biochemica Biophysica Acta 1505: 144-157
14. Pǎun Gh (2000) Computing with membranes. Journal of Computer and System Sciences 61(1): 108-143
15. Pǎun Gh (2002) Membrane Computing. An Introduction. Springer-Verlag, Berlin, Heidelberg
16. Pelmont J (1995) Catalyseurs du monde vivant. Press Universitaires de Grenoble, Grenoble
17. Peschek GA (1987) Respiratory electron transport. In: Fay P and Van Baalen C (eds) The Cyanobacteria, pp. 119-161. Elsevier Science Publishers, Amsterdam
18. 3 - type) in membranes of salt stressed cyanobacteria. FEMS - Microbiology Letters 124: 431-438
19. Peschek GA and Zoder R (2001) Temperature stress and basic bioenergetic strategies for stress defence. In: Rai LC and Gaur JP (eds) Algal Adaptation to Environmental Stress, pp. 203-258. Springer-Verlag, Berlin
20. Puustinen A, Finel M, Haltia T, Gennis RB and Wikstrom M (1991) Properties of the two terminal oxidades of Escherichia coli. Biochemistry 30: 3936-3942
21. Saier MH (1999) Genome archaeology leading to the characterization and classification of transport proteins. Current Opinion Microbiology 2: 555-561
22. Singer SJ and Nicolson GL (1972) The fluid mosaic model of the structure of cell membranes. Science 175: 720-731