Hepatitis B virus genotype D strains from Estonia share sequence similarity with strains from Siberia and may specify ayw4

Journal of Medical Virology

Volumn 74, Issue 2, 2004, Pages 221-227

  Tallo, Tatjana ^a,b   Norder, Helene ^b   Tefanova, Valentina ^a   Krispin, Tõnu ^e   Priimägi, Ludmilla ^a   Mukomolov, Sergey ^c   Mikhailov, Mikhail ^d   Magnius, Lars O ^b  

^a NATIONAL INSTITUTE FOR HEALTH DEVELOPMENT   (Estonia)

^b SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

^c ST PETERSBURG PASTEUR INSTITUTE   (Russian Federation)

^d INSTITUTE OF BIOMEDICAL CHEMISTRY   (Russian Federation)

^e UNIVERSITY OF TARTU   (Estonia)

Author keywords

Former USSR; Genotype; Phylogenetic analysis; Subtype

Indexed keywords

ALANINE; GENE PRODUCT; LEUCINE; SERINE;

AMINO ACID SUBSTITUTION; ARTICLE; ESTONIA; GENE SEQUENCE; GENETIC STABILITY; GENETIC VARIABILITY; GENOTYPE; HEPATITIS B VIRUS; HEPATITIS B VIRUS A ADW2; HEPATITIS B VIRUS AYW4; HEPATITIS B VIRUS C ADRQ; HEPATITIS B VIRUS D; HEPATITIS B VIRUS D AYW2; HEPATITIS B VIRUS D AYW3; HEPATITIS B VIRUS D AYW4; HEPATITIS B VIRUS S AYW3; HUMAN; IMMUNE ESCAPE MUTANT; NUCLEOTIDE SEQUENCE; PHYLOGENY; RUSSIAN FEDERATION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; USSR; VIRUS GENE; VIRUS ISOLATION; VIRUS MUTANT; VIRUS S GENE; VIRUS STRAIN; VIRUS TYPING;

ESTONIA; GENOTYPE; HEPATITIS B; HEPATITIS B SURFACE ANTIGENS; HEPATITIS B VIRUS; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SIBERIA;

HEPATITIS B VIRUS;

EID: 4344607403     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.20169     Document Type: Article

References (26)

1. Arauz-Ruiz P, Norder H, Robertson BH, Magnius LO. 2002. Genotype H: A new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 83:2059-2073.
2. Austerlitz R. 1987. Uralic languages. In Comrie B, editor. The world's major languages. New York: Oxford University Press. pp 567-576.
3. Bancroft WH, Mundon FK, Russell PK. 1972. Detection of additional antigenic determinants of hepatitis B antigen. J Immunol 109:842-848.
4. Carman WF, Zanetti AR, Karayiannis P, Waters J, Manzillo G, Tanzi E, Zuckerman AJ, Thomas HC. 1990. Vaccine-induced escape mutant of hepatitis B virus. Lancet 11:325-329.
5. Couroucé AM, Holland PV, Muller JY, Soulier JP. 1976. HBsAg subtypes. Bibliotheca hematologica 42. Basel: Karger. p 133.
6. Felstenstein J. 1993. PHYLIP: Phylogeni inference package; version 3.52c. Seatle, WA: University of Washington.
7. Gandhe SS, Chadha MS, Arankalle VA. 2003. Hepatitis B virus genotypes and serotypes in Western India: Lack of clinical significance. J Med Virol 69:324-330.
8. Ganem D, Varmus H. 1987. Molecular biology of the hepatitis B virus. Annu Rev Biochem 56:651-693.
9. Grannikova SA, Rusakova EV, Budnitskaia PZ, Koroleva VM, Lorinskaia TM. 1977. Subtype characteristics of the surface antigen of hepatitis B in different regions of the USSR. Zh Mikrobiol Epidemiol Immunobiol 10:97-101.
10. Harrison TJ, Hopes EA, Oon CJ, Zanetti AR, Zuckerman AJ. 1991. Independent emergence of a vaccine-induced escape mutant of hepatitis B virus. J Hepatol 13:S105-S107.
11. Koyanagi T, Nakamuta M, Sakai H, Sugimoto R, Enjoji M, Koto K, Iwamoto H, Kumazawa T, Mukaide M, Nawata H. 2000. Analysis of HBs antigen negative variant of hepatitis B virus: Unique substitutions, Glu129 to Asp and Gly145 to Ala in the surface antigen gene. Med Sci Monit 6:1165-1169.
12. Le Bouvier GL. 1971. The heterogeneity of Australia antigen. J Infect Dis 123:671-675.
13. Magnius LO, Kaplan L, Vyas GN, Perkins HA. 1975. A new virus-specified determinants of hepatitis B surface antigen. Acta Pathol Microbiol Scand 83B:295-297.
14. Naumann H, Schaefer S, Yoshida CF, Gaspar AM, Repp R, Gerlich WH. 1993. Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4. J Gen Virol 74:1627-1632.
15. Netesova IG, Swenson PD, Osipova LP, Gubina MA, Posukh OL, Netesov SV. 2003. Determination of HBsAg subtypes in Western Siberian part of Russia. J Med Virol 71:183-187.
16. Norder H, Hammas B, Magnius LO. 1990. Typing of hepatitis B virus genomes by a simplified polymerase chain reaction. J Med Virol 31:215-221.
17. Norder H, Hammas B, Löfdahl S, Courouce AM, Magnius LO. 1992a. Comparison of the amino acid sequence of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol 73:1201-1208.
18. Norder H, Courouce AM, Magnius LO. 1992b. Molecular basis of hepatitis B virus serotype variations within the four major subtypes. J Gen Virol 73:3141-3145.
19. Norder H, Hammas B, Lee SD, Bile K, Courouce AM, Mushahwar IK, Magnius LO. 1993. Genetic relatedness of hepatitis B viral strains of diverse geographical origin and natural variations in the primary structure of the surface antigen. J Gen Virol 74:1341-1348.
20. Norder H, Courouce AM, Magnius LO. 1994. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 198:489-503.
21. Okamoto H, Imai M, Tsuda F, Tanaka T, Miyakawa Y, Mayumi M. 1987. Point mutation in the S gene of hepatitis B virus for a d/y or w/r subtypic change in two blood donors carrying a surface antigen of compound subtype adyr or adwr. J Virol 61:3030-3034.
22. Okamoto H, Tsuda F, Sakugawa H, Sastrosoewinjo R, Imai M, Miyakawa Y, Mayumi M. 1988. Typing hepatitis B virus by homology in nucleotide sequence: Comparison of surface antigen subtypes. J Gen Virol 69:2575-2583.
23. Okamoto H, Omi S, Wang Y, Itoh Y, Tsuda F, Tanaka T, Akahane Y, Miyakawa Y, Mayumi M. 1989. The loss of subtypic determinants in alleles, d/y of w/r, on hepatitis B surface antigen. Mol Immunol 26:197-205.
24. Stuyver L, De Gendt S, Van Geyt C, Zoulim F, Freid M, Schinazi RF, Rossau R. 2000. A new genotype of hepatitis B virus: Complete genome and phylogenetic relatedness. J Gen Virol 81:67-74.
25. Swenson PD, Van Geyt C, Alexander ER, Hagan H, Freitag-Koontz JM, Wilson S, Norder H, Magnius LO, Stuyver L. 2001. Hepatitis B virus genotypes and HBsAg subtypes in refugees and injection drug users in the United States determined by LiPA and monoclonal EIA. J Med Virol 64:305-311.
26. Valenzuela P, Quiroga M, Zaldivar J, Gray P, Rutter WJ. 1980. The nucleotide sequence of the hepatitis B viral genome and the identification of the major viral genes. In: Fields B, Jaenisch R, Fox C, editors. ICN-UCLA Symposia on Animal Virus Genetics. New York: Academic Press. pp 57-70.