Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses

Planta

Volumn 219, Issue 2, 2004, Pages 359-368

  Bauer, Petra ^a,d   Lubkowitz, Mark ^a,e   Tyers, Randall ^a   Nemoto, Keisuke ^a,f   Meeley, Robert B ^b   Goff, Steven A ^c   Freeling, Michael ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b PIONEER HI BRED INTERNATIONAL INC   (United States)

^c SYNGENTA BIOTECHNOLOGY INC   (United States)

^d LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^e SAINT MICHAEL'S COLLEGE   (United States)

^f UNIVERSITY OF TOKYO   (Japan)

Author keywords

Conserved intron sequence; Ectopic expression; Grass synteny; knotted1 related homeobox genes; Leaf mutant; Zea

Indexed keywords

APICAL MERISTEM; INTRON; KNOX GENES; MUTANTS;

COMPOSITION EFFECTS; DATABASE SYSTEMS; MUTAGENESIS; PLANTS (BOTANY); PROTEINS; YEAST;

GENES;

CORN; GENES; LEAVES; MUTATION; PLANTS; PROTEINS;

POACEAE; TRANSPOSONS; ZEA; ZEA MAYS;

HOMEODOMAIN PROTEIN; KNOX1 PROTEIN, PLANT; LG1 PROTEIN, ZEA MAYS; LG3 PROTEIN, ZEA MAYS; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; HOMEOBOX; INTRON; MAIZE; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT LEAF; POACEAE;

AMINO ACID SEQUENCE; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION, PLANT; GENES, HOMEOBOX; HOMEODOMAIN PROTEINS; INTRONS; MOLECULAR SEQUENCE DATA; MUTATION; PHENOTYPE; PLANT LEAVES; PLANT PROTEINS; POACEAE; ZEA MAYS;

EID: 4344577405     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00425-004-1233-6     Document Type: Article

References (52)

1. Ahn S, Tanksley SD (1993) Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90:7980-7984
2. Bauer P, Crespi MD, Szeczi J, Allison LA, Schultze M, Ratet P, Kondorosi E, Kondorosi A (1994) Alfalfa Enod12 genes are differentially regulated during nodule development by Nod factors and Rhizobium invasion. Plant Physiol 105:585-592
3. Bellaoui M, Pidkowich MS, Samach A, Kushalappa K, Kohalmi SE, Modrusan Z, Crosby WL, Haughn GW (2001) The Arabidopsis BELL1 and KNOX TALE homeodomain proteins interact through a domain conserved between plants and animals. Plant Cell 13:2455-2470
4. Bennett MD (1985) Plant genetics. Liss, New York, pp 283-302
5. Bensen RJ, Johal RJ, Crane VC, Tossberg JT, Schnable PS, Meeley RB, Briggs SP (1995) Cloning and characterization of the maize An1 gene. Plant Cell 7:75-84
6. Byrne M, Timmermans M, Kidner C, Martienssen R (2001) Development of leaf shape. Curr Opin Plant Biol 4:38-43
7. Chen JJ, Janssen BJ, Williams A, Sinha N (1997) A gene fusion at a homeobox locus: alterations in leaf shape and implications for morphological evolution. Plant Cell 9:1289-1304
8. Devos KM, Gale MD (1997) Comparative genetics in the grasses. Plant Mol Biol 35:3-15
9. Foster T, Yamaguchi J, Wong BC, Veit B, Hake S (1999) Gnarley1 is a dominant mutation in the knox4 homeobox gene affecting cell shape and identity. Plant Cell 11:1239-1252
10. Fowler JE, Freeling M (1996) Genetic analysis of mutations that alter cell fates in maize leaves: dominant Liguleless mutations. Devel Genet 18:198-222
11. Freeling M (1992) A conceptual framework for maize leaf development. Devel Biol 153:44-58
12. Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94:6809-6814
13. Gaut BS, Morton BR, McCaig BC, Clegg MT (1996) Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci USA 93:10274-10279
14. Goff SA, Ricke D, Lan TH et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:79-92
15. Guthrie C, Fink GR (1991) Guide to yeast genetics and molecular biology. Academic press, New York
16. Gyuris J, Golemis E, Chertkov H, Brent R (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75:791-803
17. Hardison R, Oeltjen J, Miller W (1997) Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res 7:959-966
18. Hay A, Kaur H. Phillips A, Hedden P, Hake S, Tsiantis M (2002) The gibberellin pathway mediates KNOTTED1-type homeobox function in plants with different body plans. Curr Biol 12:1557-65
19. Ilic K, SanMiguel PJ, Bennetzen JL (2003) A complex history of rearrangement in an orthologous region of the maize, sorghum and rice genomes. Proc Natl Acad Sci USA 100:12265-12270
20. Inada DC, Bashir A, Lee C, Thomas BC, Ko C, Goff SA, Freeling M (2003) Conserved noncoding sequences in the grasses. Genome Res 13:2030-2041
21. Jackson D, Veit B, Hake S (1994) Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development 120:405-413
22. Kaplinski NJ, Braun DM, Penterman J, Goff SA, Freeling M (2002) Utility and distribution of conserved noncoding sequences in the grasses. Proc Natl Acad Sci USA 99:6147-6151
23. Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125:1198-1205
24. Kerstetter R, Vollbrecht E, Lowe B, Veit B, Yamaguchi J, Hake S (1994) Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes. Plant Cell 6:1877-1887
25. Langham R, Walsh J, Dunn K, Goff S, Freeling M (2004) Gene duplication, fractionation and the origin of novelty. Genetics (in press)
26. Li JJ, Herskowitz I (1993) Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system. Science 262:1870-1874
27. Li W-H, Grauer D (1991) Fundamentals of molecular evolution. Sinauer, Sutherland, MA
28. Long JA, Moan EI, Medford JI, Barton MK (1996) A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379:66-69
29. Muehlbauer GJ, Fowler JE, Girard L, Tyers R, Harper L, Freeling M (1999) Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf. Plant Physiol 119:651-662
30. Müller J, Wang Y, Franzen R, Santi L, Salamini F, Rohde W (2001) In vitro interactions between barley TALE homeodomain proteins suggest a role for protein-protein associations in the regulation of Knox gene function. Plant J 27:13-23
31. Müller KJ, Romano N, Gerstner O, Garcia-Maroto F, Pozzi C, Salamini F, Rohde W (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron. Nature 374:727-730
32. Nagasaki H, Sakamoto T, Sato Y, Matsuoka M (2001) Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell 13:2085-2098
33. Ori N, Juarez MT, Jackson D, Yamaguchi J, Banowetz GM, Hake S (1999) Leaf senescence is delayed in tobacco plants expressing the maize homeobox gene knotted1 under the control of a senescence-activated promoter. Plant Cell 11:1073-1080
34. Postma-Haarsma AD, Verwoert IIGS, Stronk OP, Koster J, Lamers GEM, Hoge JHC, Meijer AH (1999) Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis. Plant Mol Biol 39:257-271
35. Postma-Haarsma AD, Rueb S, Scarpella E, den Besten W. Hoge JH, Meijer AH (2002) Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol Biol 48:423-441
36. Reiser L, Sanchez-Baracaldo P, Hake S (2000) Knots in the family tree: evolutionary relationships and functions of knox homeobox genes. Plant Mol Biol 42:151-166
37. Santi L, Wang Y, Stile MR, Berendzen K, Wanke D, Roig C, Pozzi C, Muller K, Muller J, Rohde W, Salamini F (2003) The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J 34:813-826
38. Sato Y, Sentoku N, Miura Y, Hirochika H, Kitano H, Matsuoka M (1999) Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO 18:992-1002
39. Scanlon MJ, Schneeberger RG, Freeling M (1996) The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain. Development 122:1683-1691
40. Schneeberger RG, Becraft PW, Hake S, Freeling M (1995) Ectopic expression of the knox homeobox gene rough sheath1 alters cell fate in the maize leaf. Development 9:2292-2304
41. Schneeberger R, Tsiantis M, Freeling M, Langdale MA (1998) The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development. Development 125:2857-2865
42. Sentoku N, Sato Y, Kurata N, Ito Y, Kitano H, Matsuoka M (1999) Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development. Plant Cell 11:1651-1663
43. Sentoku N, Sato Y, Matsuoka M (2000) Overexpression of rice OSH genes induces ectopic shoots on leaf sheaths of transgenic rice plants. Dev Biol 220:358-364
44. Smith HM, Hake S (2003) The interaction of two homeobox genes, BREVIPEDICELLUS and PENNYWISE, regulates internode patterning in the Arabidopsis inflorescence. Plant Cell 8:1717-1727
45. Smith HMS, Boschke I, Hake S (2002) Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity. Proc Natl Acad Sci USA 99:9579-9584
46. Smith LG, Greene B, Veit B, Hake S (1992) A dominant mutation in the maize homeobox gene, Knotted-1, causes its ectopic expression in leaf cells with altered fates. Devel 116:21-30
47. Timmermans MCP, Hudson A, Becraft PW, Nelson T (1999) ROUGH SHEATH2: a Myb protein that represses knox homeobox genes in maize lateral organ primordia. Science 284:151-153
48. Tsiantis M, Langdale JA (1998) The formation of leaves. Curr Opin Plant Biol 1:43-48
49. Tsiantis M, Schneeberger R, Golz JF, Freeling M, Langdale JA (1999) The maize rough sheath2 gene and leaf development programs in monocot and dicot plants. Science 284:154-156
50. Venglat SP, Dumonceaux T, Rozwadowski K, Parnell L, Babic V, Keller W, Martienssen R, Selvaraj G, Datla R (2002) The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. Proc Natl Acad Sci USA 99:4730-4735
51. Vollbrecht E, Reiser L, Hake S (2000) Shoot meristem size is dependent on inbred background and presence of the maize homeobox gene, knotted1. Development 127:3161-3172
52. Yu J, Hu S, Wang J et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92