Patterns of genetic diversity in Great Lakes bloaters (Coregonus hoyi) with a view to future reintroduction in Lake Ontario

Conservation Genetics

Volumn 9, Issue 2, 2008, Pages 281-293

  Favé, Marie Julie ^a   Turgeon, Julie ^a  

^a UNIVERSITÉ LAVAL   (Canada)

Author keywords

Bottleneck; Coregonus hoyi; Genetic diversity; Laurentian Great Lakes; Reintroduction

Indexed keywords

DEMOGRAPHY; GENETIC DIFFERENTIATION; LAKE WATER; POPULATION BOTTLENECK; POPULATION GENETICS; POPULATION STRUCTURE; REINTRODUCTION; SALMONID;

GREAT LAKES [NORTH AMERICA]; LAKE ONTARIO; NORTH AMERICA;

COREGONUS HOYI; COREGONUS JOHANNAE;

EID: 43349101789     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-007-9339-6     Document Type: Article

References (72)

1. Baldwin B (1999) Native prey fish re-introduction into Lake Ontario: Bloater (Coregonus hoyi). Discussion Paper prepared for the Great Lakes Fishery Commission, Lake Ontario Committee. Available via www.glfc.org/lakecom/loc/ lochome.php. Cited 25 September 2006
2. Baldwin NA, Saalfeld RW, Dochoda MR, Buettner HJ, Eshenroder R (2005) Commercial Fish Production in the Great Lakes 1867-2000. Great Lakes Fishery Commission. Available via http://www.glfc.org/databases/commercial/commerc.php. Cited 25 September 2006
3. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004) GENETIX V4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, Université de Montpellier II, Montpellier (France)
4. Bowen BW (1999) Preserving genes, species, or ecosystems? Healing the fractured foundations of conservation policy. Mol Ecol 8:S5-S10
5. Bunnell DB, Madenjian CP, Croley II TE (2006) Long-term trends of bloater (Coregonus hoyi) recruitment in Lake Michigan: evidence for the effect of sex-ratio. Can J Fish Aquat Sci 63:832-844
6. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 21:550-570
7. Christie WJ (1973) A review of the changes in the fish species composition of lake Ontario. Great Lakes Fish Comm Tech Rep 23:65 p
8. Christie WJ (1974) Changes in fish species composition of the Great Lakes. J Fish Res Bd Can 31:827-854
9. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2004
10. Crossman EJ (1991) Introduced freshwater fishes: a review of North American perspective with emphasis on Canada. Can J Fish Aquat Sci 48(Suppl. 1):46-57
11. Ebener MP (2005) The state of Lake Huron in 1999. Great Lakes Fishery Commission Special Publication 05-02, 146 pages. Available via http://www.glfc.org/pubs/pub.htm#pub s. Cited 25 September 2006
12. Ebert D, Haag C, Kirkpatrick M, et al (2002) A selective advantage to immigrant genes in a Daphnia metapopulation. Science 295:485-488
13. Eshenroder R, Krueger CC (2002) Reintroduction of native fishes to the Great Lakes proper: a research theme area, Great Lake Fishery Commission, Board of Technical Experts. Available via www.glfc.org/research/Nativefish.htm. Cited 25 September 2006
14. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611-2620
15. Favé MJ (2006) Réintroduction du cisco de fumage (Coregonus hoyi) dans le lac Ontario: diversité génétique et consanguinité. M.Sc. thesis, Université Laval
16. Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
17. Fleischer GW, Madenjian CP, Eliott RF, Toneys ML (2005) Planktivores. In: Holey ME, Trudeau TN (eds) The state of Lake Michigan in 2000. Great Lakes Fishery Commission Special Publication 05-01, 25-32. Available via http://www.glfc.org/ pubs/pub.htm#pub s. Cited 25 September 2006
18. Frankham R (1996) Relationship of genetic variation to population size in wildlife. Conserv Biol 10:1500-1508
19. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge
20. Garza JC, Williamson EG (2001) Detection of reduction in population sizes using data from microsatellites loci. Mol Ecol 10:305-318
21. Gilk SE, Wang IA, Hoover CL, Smoker WW, Taylor SG, Gray AK, Gharrett AJ (2004) Outbreeding depression in hybrids between spatially separated pink salmon, Oncorhynchus gorbuscha, populations: marine survival, homing ability, and variability in family size. Environ Biol Fishes 69:287-297
22. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Institute of Ecology, Lausanne, Switzerland. Available from http://www.unilch/ izea/softwares/fstat.htm l. Cited 25 September 2006
23. Harley EH, Baumgarten I, Cunningham J, O'Ryan C (2005) Genetic variation and population structure in remnant populations of black rhinoceros, Diceros biscornis, in Africa. Mol Ecol 14:2981-2990
24. Hartl DL, Clark AG (1997) Principles of population genetics, 2nd ed. Sinauer, Sunderland, MA
25. Hedrick PW, Kalinowski ST (2000) Inbreeding depression in conservation biology. Ann Rev Ecol Syst 31:139-162
26. Holey ME, Trudeau TNE (2005) The state of Lake Michigan in 2000. Great Lakes Fishery Commission Special Publication 05-01, 122 pages. Available via http://www.glfc.org/ pubs/pub.htm#pub s. Cited 25 September 2006
27. Horns WH, Bronte CR, Buishan TR et al (2003) Fish-community objectives for Lake Superior. In: Great Lakes Fishery Commission Special Publication, Great Lakes Fishery Commission Special Publication 03-01
28. Hughes AR, Stachowicz JJ (2004) Genetic diversity enhances the resistance of a seagrass ecosystem to disturbance. Proc Natl Acad Sci USA 101:8998-9002
29. Jones ME, Paetkau D, Geffen E, Moritz C (2004) Genetic diversity and population structure of Tasmanian devils, the largest marsupial carnivore. Mol Ecol 13:2197-2209
30. Keller LF, Weller DM (2002) Inbreeding effects in wild populations. Trends Ecol Evol 17:230-241
31. Kuo C-H, Janzen FJ (2004) Genetic effects of a persistent bottleneck on a natural population of ornate box turtle (Terrapene ornata). Conserv Genet 5:425-437
32. Lippé C, Dumont P, Bernatchez L (2006) High genetic diversity and no inbreeding in the endangered copper redhorse, Moxostoma hubbsi (Catostomidae, Pisces): the positive sides of a long generation time. Mol Ecol 15:1769-1780
33. Lynch M (1991) The genetic interpretation of inbreeding depression and outbreeding depression. Evolution 45:622-629
34. McPhail JD, Lindsey CC (1970) Freshwater fishes of Northwestern Canada and Alaska. Bull Fish Res Bd Can 173:1-381
35. Mills EL, Casselman JM, Dermott R et al (2005) A synthesis of ecological and fish community changes in Lake Ontario, 1970-2000. Great Lakes Fishery Commission Technical Report 67, 94 pages. Available via http://www.glfc.org/ pubs/pub.htm#tech_report s. Cited25 September 2006
36. Mills EL, Leach JH, Carlton JT, Secor CL (1991) Exotic species in the Great Lakes: a history of biotic crises and anthropogenic introductions, pp 1-118. Great Lakes Fishery Commission Project Completion Report, 140 pages. Available via http://www.glfc.org/ research/rcr.ph p. Cited 25 September 2006
37. Moritz C (1999) Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas 130:217-228
38. Moritz C (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst Biol 51:238-254
39. Nielsen EE, Hansen MM, Loeschcke V (1997) Analysis of microsatellite DNA from old scale samples of Atlantic salmon Salmo salar a comparison of genetic composition over 60 years. Mol Ecol 6:487-492
40. O'Brian SJ, Evermann JF (1988) Interactive influence of infectious diseases and genetic diversity in natural populations. Trends Ecol Evol 3:254-259
41. Patton JC, Gallaway BJ, Fechhelm RG, Cronin MA (1997) Genetic variation of microsatellites and mitochondrial DNA markers in broad whitefish (Coregonus nasus) in the Colville and Sagavanirktok Rivers in northern Alaska. Can J Fish Aquat Sci 54:1548-1556
42. Petit JP, Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12:844-855
43. Phillips RB, Ehlinger TJ (1995) Evolutionary and ecological considerations in the reestablishment of Great Lakes coregonid fishes. In: Nielsen JL (ed) Evolution and the aquatic ecosystem: defining unique units in population conservation. American Fisheries Society, pp 133-144
44. Piry S, Alapetite A, Cornuet J-M, Paetkau D, Beaudoin L, Estoup A (2004) GeneClass2: A software for genetic assignment and first-generation migrant detection. J Hered 95:536-539
45. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
46. Ramstad KM, Woody CA, Sage GK, Allendorf FW (2004) Founding events influence genetic population structure of sockeye salmon (Oncorhynchus nerka) in Lake Clark, Alaska. Mol Ecol 13:277-290
47. Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proc Natl Acad Sci USA 94:9197-9201
48. Raymond M, Rousset F (2003) GENEPOP (version 3.4), an update of: GENEPOP (version 1.2): population genetics software for exact test and ecumenism. J Hered 86:248-249
49. Ricciardi A (2001) Facilitative interactions among aquatic invaders: is an "invasional meltdown" occuring in the Great Lakes? Can J Fish Aquat Sci 58:2513-2525
50. Rice WR (1989) Analysing tables of statistical tests. Evolution 43:223-225
51. Ryman N, Laikre L (1991) Effect of supportive breeding on the genetically effective population size. Conserv Biol 5:325-329
52. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor, NY
53. Schaeffer JS (2004) Population dynamics of bloaters Coregonus hoyi in Lake Huron, 1980-1998. Ann Zool Fenn 41:271-279
54. Schneider SD, Roessli D, Excoffier L (2000) ARLEQUIN (V. 2.0): a software for population genetic analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
55. Scott WB, Crossman EJ (1973) Freshwater fishes of Canada. Bull Fish Res Bd Can 184:1-1092
56. Seehausen O (2004) Hybridization and adaptive radiation. Trends Ecol Evol 19:198-207
57. Sherwin WB, Timms P, Wilcken J, Houlden B (2000) Analysis and conservation implications of Koalas genetics. Conserv Biol 14:639-649
58. Smith GR, Todd TN (1984) Evolution of species flocks of fishes in north temperate lakes. In: Echelle AA, Kornfield I (eds) Evolution of fish species flocks. University of Maine Press, Orono, pp 45-68
59. Stedman RM, Argyle RL (1985) Rainbow smelt (Omserus mordax) as predators on young bloaters (Coregonus hoyi) in Lake Michigan. J Great Lakes Res 11:40-42
60. Stewart TJ, Lange RE, Orsatti SD, Schneider CP, Mathers A, Daniels ME (1999) Fish-community objectives for Lake Ontario. Great Lakes Fishery Commission Special Publication 99-01, 63 pages. Available via http://www.glfc.org/pubs/pub.htm#pub s. Cited 25 September 2006
61. Tallmon DA, Luikart G, Waples RS (2004) The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol 19:489-496
62. TeWinkel LM, Fleischer GW (1999) Vertical migration and nighttime distribution of adult bloaters in Lake Michigan. Trans Am Fish Soc 128:459-474
63. Todd TN (1981) Allelic variability in species and stocks of Lake Superior ciscoes (Coregoninae). Can J Fish Aquat Sci 38:1808-1813
64. Turgeon J, Bernatchez L (2001) Clinal variation at microsatellites loci reveals historical secondary intergradation between glacial races of Coregonus artedi (Teleostei: Coregoninae). Evolution 55:2274-2286
65. Turgeon J, Bernatchez L (2003) Reticulate evolution and phenotypic diversity in North American ciscoes, Coregonus spp. (Teleostei: Salmonidae): implication for the conservation of an evolutionary legacy. Conserv Genet 4:67-81
66. Turgeon J, Estoup A, Bernatchez L (1999) Species flock in the North American Great Lakes: Molecular Ecology of Lake Nipigon ciscoes (Teleostei: Coregonidae: Coregonus). Evolution 53:1857-1871
67. Van Oostershout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535-538
68. Waples RS, Gaggiotti OE (2006) What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Mol Ecol 15:1419-1439
69. Watts PC, Rouquette JR, Saccheri IJ, Kemp SJ, Thompson DJ (2004) Molecular and ecological evidence for small-scale isolation by distance in an endangered damselfly, Coenagrion mercuriale. Mol Ecol 13:2931-2945
70. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
71. Whitehouse AM, Harley EH (2001) Post-bottleneck genetic diversity of elephants populations in South Africa, revealed using microsatellite analysis. Mol Ecol 10:2139-2149
72. Whitlock MC, Ingvarsson PK, Hatfield T (2000) Local drift and the heterosis of interconnected populations. Heredity 84:452-457