메뉴 건너뛰기




Volumn 167, Issue 10, 2008, Pages 1260-1267

Buccal swabs and treated cards: Methodological considerations for molecular epidemiologic studies examining pediatric populations

Author keywords

DNA; Epidemiologic methods; Epidemiology, molecular; Genome; Mouth mucosa; Pediatrics

Indexed keywords

BLOCKING AGENT; CYTOCHROME P450 3A4; DNA; STEROID RECEPTOR; STEROID XENOBIOTIC RECEPTOR;

EID: 43249131047     PISSN: 00029262     EISSN: 14766256     Source Type: Journal    
DOI: 10.1093/aje/kwn012     Document Type: Article
Times cited : (41)

References (49)
  • 1
    • 0029796034 scopus 로고    scopus 로고
    • Guidelines of the National Heart, Lung, and Blood Institute Working Group on Blood Drawing, Processing, and Storage for Genetic Studies
    • Austin MA, Ordovas JM, Eckfeldt JH, et al. Guidelines of the National Heart, Lung, and Blood Institute Working Group on Blood Drawing, Processing, and Storage for Genetic Studies. Am J Epidemiol 1996;144:437-41.
    • (1996) Am J Epidemiol , vol.144 , pp. 437-441
    • Austin, M.A.1    Ordovas, J.M.2    Eckfeldt, J.H.3
  • 2
    • 0036228599 scopus 로고    scopus 로고
    • DNA banking for epidemiologic studies: A review of current practices
    • Steinberg K, Beck J, Nickerson D, et al. DNA banking for epidemiologic studies: a review of current practices. Epidemiology 2002;13:246-54.
    • (2002) Epidemiology , vol.13 , pp. 246-254
    • Steinberg, K.1    Beck, J.2    Nickerson, D.3
  • 4
    • 16344366410 scopus 로고    scopus 로고
    • Recruitment rates and fear of phlebotomy in pediatric patients in a genetic study of epilepsy
    • Dlugos DJ, Scattergood TM, Ferraro TN, et al. Recruitment rates and fear of phlebotomy in pediatric patients in a genetic study of epilepsy. Epilepsy Behav 2005;6:444-6.
    • (2005) Epilepsy Behav , vol.6 , pp. 444-446
    • Dlugos, D.J.1    Scattergood, T.M.2    Ferraro, T.N.3
  • 5
    • 0034650164 scopus 로고    scopus 로고
    • Self-collection of oral epithelial cell DNA under instruction from epidemiologic interviewers
    • Harty LC, Shields PG, Winn DM, et al. Self-collection of oral epithelial cell DNA under instruction from epidemiologic interviewers. Am J Epidemiol 2000;151:199-205.
    • (2000) Am J Epidemiol , vol.151 , pp. 199-205
    • Harty, L.C.1    Shields, P.G.2    Winn, D.M.3
  • 7
    • 0036048227 scopus 로고    scopus 로고
    • DNA extraction and HLA genotyping using mailed mouth brushes from children
    • Witso E, Stene LC, Paltiel L, et al. DNA extraction and HLA genotyping using mailed mouth brushes from children. Pediatr Diabetes 2002;3:89-94.
    • (2002) Pediatr Diabetes , vol.3 , pp. 89-94
    • Witso, E.1    Stene, L.C.2    Paltiel, L.3
  • 8
    • 4043111962 scopus 로고    scopus 로고
    • Reliability of non-invasively acquired human genomic DNA as a substrate for real-time PCR-assisted analysis of genetic polymorphisms
    • Neuhaus T, Geisen G, Bolt HM, et al. Reliability of non-invasively acquired human genomic DNA as a substrate for real-time PCR-assisted analysis of genetic polymorphisms. Arch Toxicol 2004;78:390-6.
    • (2004) Arch Toxicol , vol.78 , pp. 390-396
    • Neuhaus, T.1    Geisen, G.2    Bolt, H.M.3
  • 9
    • 3042801635 scopus 로고    scopus 로고
    • Optimizing buccal cell DNA yields in mothers and infants for human leukocyte antigen genotyping
    • Saftlas AF, Waldschmidt M, Logsden-Sackett N, et al. Optimizing buccal cell DNA yields in mothers and infants for human leukocyte antigen genotyping. Am J Epidemiol 2004;160:77-84.
    • (2004) Am J Epidemiol , vol.160 , pp. 77-84
    • Saftlas, A.F.1    Waldschmidt, M.2    Logsden-Sackett, N.3
  • 10
    • 0032788893 scopus 로고    scopus 로고
    • Collection of genomic DNA by buccal swabs for polymerase chain reaction-based biomarker assays
    • Walker AH, Najarian D, White DL, et al. Collection of genomic DNA by buccal swabs for polymerase chain reaction-based biomarker assays. Environ Health Perspect 1999;107:517-20.
    • (1999) Environ Health Perspect , vol.107 , pp. 517-520
    • Walker, A.H.1    Najarian, D.2    White, D.L.3
  • 11
    • 0034894521 scopus 로고    scopus 로고
    • Whole genome amplification increases the efficiency and validity of buccal cell genotyping in pediatric populations
    • Zheng S, Ma X, Buffler PA, et al. Whole genome amplification increases the efficiency and validity of buccal cell genotyping in pediatric populations. Cancer Epidemiol Biomarkers Prev 2001;10:697-700.
    • (2001) Cancer Epidemiol Biomarkers Prev , vol.10 , pp. 697-700
    • Zheng, S.1    Ma, X.2    Buffler, P.A.3
  • 12
    • 0035208684 scopus 로고    scopus 로고
    • Evaluation of buccal cell collection protocols for genetic susceptibility studies
    • Moore L, Wiencke JK, Eng C, et al. Evaluation of buccal cell collection protocols for genetic susceptibility studies. Biomarkers 2001;6:448-54.
    • (2001) Biomarkers , vol.6 , pp. 448-454
    • Moore, L.1    Wiencke, J.K.2    Eng, C.3
  • 13
    • 0037270487 scopus 로고    scopus 로고
    • DNA from buccal swabs recruited by mail: Evaluation of storage effects on long-term stability and suitability for multiplex polymerase chain reaction genotyping
    • Freeman B, Smith N, Curtis C, et al. DNA from buccal swabs recruited by mail: evaluation of storage effects on long-term stability and suitability for multiplex polymerase chain reaction genotyping. Behav Genet 2003;33:67-72.
    • (2003) Behav Genet , vol.33 , pp. 67-72
    • Freeman, B.1    Smith, N.2    Curtis, C.3
  • 15
    • 0034904540 scopus 로고    scopus 로고
    • Collection of genomic DNA from adults in epidemiological studies by buccal cytobrush and mouthwash
    • Garcia-Closas M, Egan KM, Abruzzo J, et al. Collection of genomic DNA from adults in epidemiological studies by buccal cytobrush and mouthwash. Cancer Epidemiol Biomarkers Prev 2001;10:687-96.
    • (2001) Cancer Epidemiol Biomarkers Prev , vol.10 , pp. 687-696
    • Garcia-Closas, M.1    Egan, K.M.2    Abruzzo, J.3
  • 16
    • 1242293087 scopus 로고    scopus 로고
    • Comparison of methods for collection of DNA samples by mail in the Black Women's Health Study
    • Cozier YC, Palmer JR, Rosenberg L. Comparison of methods for collection of DNA samples by mail in the Black Women's Health Study. Ann Epidemiol 2004;14:117-22.
    • (2004) Ann Epidemiol , vol.14 , pp. 117-122
    • Cozier, Y.C.1    Palmer, J.R.2    Rosenberg, L.3
  • 17
    • 0035172937 scopus 로고    scopus 로고
    • Collection of buccal cell DNA in seventh-grade children using water and a toothbrush
    • London SJ, Xia J, Lehman TA, et al. Collection of buccal cell DNA in seventh-grade children using water and a toothbrush. Cancer Epidemiol Biomarkers Prev 2001;10:1227-30.
    • (2001) Cancer Epidemiol Biomarkers Prev , vol.10 , pp. 1227-1230
    • London, S.J.1    Xia, J.2    Lehman, T.A.3
  • 18
    • 33749368693 scopus 로고    scopus 로고
    • Quality and quantity of saliva DNA obtained from the self-administrated oragene method - a pilot study on the cohort of Swedish men
    • Rylander-Rudqvist T, Hakansson N, Tybring G, et al. Quality and quantity of saliva DNA obtained from the self-administrated oragene method - a pilot study on the cohort of Swedish men. Cancer Epidemiol Biomarkers Prev 2006;15:1742-5.
    • (2006) Cancer Epidemiol Biomarkers Prev , vol.15 , pp. 1742-1745
    • Rylander-Rudqvist, T.1    Hakansson, N.2    Tybring, G.3
  • 19
    • 0036800661 scopus 로고    scopus 로고
    • Buccal cell DNA yield, quality, and collection costs: Comparison of methods for large-scale studies
    • King IB, Satia-Abouta J, Thornquist MD, et al. Buccal cell DNA yield, quality, and collection costs: comparison of methods for large-scale studies. Cancer Epidemiol Biomarkers Prev 2002;11:1130-3.
    • (2002) Cancer Epidemiol Biomarkers Prev , vol.11 , pp. 1130-1133
    • King, I.B.1    Satia-Abouta, J.2    Thornquist, M.D.3
  • 20
    • 0034001844 scopus 로고    scopus 로고
    • Buccal cell DNA analysis in premature and term neonates: Screening for mutations of the complete coding region for the cystic fibrosis transmembrane conductance regulator
    • Bennett LC, Kraemer R, Liechti-Gallati S. Buccal cell DNA analysis in premature and term neonates: screening for mutations of the complete coding region for the cystic fibrosis transmembrane conductance regulator. Eur J Pediatr 2000;159:99-102.
    • (2000) Eur J Pediatr , vol.159 , pp. 99-102
    • Bennett, L.C.1    Kraemer, R.2    Liechti-Gallati, S.3
  • 22
    • 0031949094 scopus 로고    scopus 로고
    • Buccal cell DNA mutation analysis for diagnosis of cystic fibrosis in newborns and infants inaccessible to sweat chloride measurement
    • Parad RB. Buccal cell DNA mutation analysis for diagnosis of cystic fibrosis in newborns and infants inaccessible to sweat chloride measurement. Pediatrics 1998;101:851-5.
    • (1998) Pediatrics , vol.101 , pp. 851-855
    • Parad, R.B.1
  • 23
    • 0034845303 scopus 로고    scopus 로고
    • The National Birth Defects Prevention Study
    • Yoon PW, Rasmussen SA, Lynberg MC, et al. The National Birth Defects Prevention Study. Public Health Rep 2001;116(suppl 1):32-40.
    • (2001) Public Health Rep , vol.116 , Issue.SUPPL. 1 , pp. 32-40
    • Yoon, P.W.1    Rasmussen, S.A.2    Lynberg, M.C.3
  • 24
    • 0034706394 scopus 로고    scopus 로고
    • Mutation analysis of Gaucher disease using dot-blood samples on FTA filter paper
    • Devost NC, Choy FY. Mutation analysis of Gaucher disease using dot-blood samples on FTA filter paper. Am J Med Genet 2000;94:417-20.
    • (2000) Am J Med Genet , vol.94 , pp. 417-420
    • Devost, N.C.1    Choy, F.Y.2
  • 25
    • 33846807768 scopus 로고    scopus 로고
    • The feasibility of storing ovarian tumor cells on databasing paper: Establishing a library of ovarian cancer DNA
    • Galaal K, Meirovitz M, Hussain R, et al. The feasibility of storing ovarian tumor cells on databasing paper: establishing a library of ovarian cancer DNA. Int J Gynecol Cancer 2007;17:94-100.
    • (2007) Int J Gynecol Cancer , vol.17 , pp. 94-100
    • Galaal, K.1    Meirovitz, M.2    Hussain, R.3
  • 26
    • 33845367876 scopus 로고    scopus 로고
    • Improved technique that allows the performance of large-scale SNP genotyping on DNA immobilized by FTA technology
    • He H, Argiro L, Dessein H, et al. Improved technique that allows the performance of large-scale SNP genotyping on DNA immobilized by FTA technology. Infect Genet Evol 2007;7:128-32.
    • (2007) Infect Genet Evol , vol.7 , pp. 128-132
    • He, H.1    Argiro, L.2    Dessein, H.3
  • 27
    • 3843099355 scopus 로고    scopus 로고
    • Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples on FTA filter paper
    • Li CC, Beck IA, Seidel KD, et al. Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples on FTA filter paper. J Clin Microbiol 2004;42:3847-9.
    • (2004) J Clin Microbiol , vol.42 , pp. 3847-3849
    • Li, C.C.1    Beck, I.A.2    Seidel, K.D.3
  • 28
    • 33746903542 scopus 로고    scopus 로고
    • Method for efficient storage and transportation of sputum specimens for molecular testing of tuberculosis
    • Guio H, Okayama H, Ashino Y, et al. Method for efficient storage and transportation of sputum specimens for molecular testing of tuberculosis. Int J Tuberc Lung Dis 2006;10:906-10.
    • (2006) Int J Tuberc Lung Dis , vol.10 , pp. 906-910
    • Guio, H.1    Okayama, H.2    Ashino, Y.3
  • 29
    • 18344396798 scopus 로고    scopus 로고
    • Comprehensive human genome amplification using multiple displacement amplification
    • Dean FB, Hosono S, Fang L, et al. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A 2002;99:5261-6.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 5261-5266
    • Dean, F.B.1    Hosono, S.2    Fang, L.3
  • 30
    • 4444309581 scopus 로고    scopus 로고
    • Genotyping of three single nucleotide polymorphisms following whole genome preamplification of DNA collected from buccal cells
    • Haberstick BC, Smolen A. Genotyping of three single nucleotide polymorphisms following whole genome preamplification of DNA collected from buccal cells. Behav Genet 2004;34:541-7.
    • (2004) Behav Genet , vol.34 , pp. 541-547
    • Haberstick, B.C.1    Smolen, A.2
  • 31
    • 28444468245 scopus 로고    scopus 로고
    • Exploring whole genome amplification as a DNA recovery tool for molecular genetic studies
    • Holbrook JF, Stabley D, Sol-Church K. Exploring whole genome amplification as a DNA recovery tool for molecular genetic studies. J Biomol Tech 2005;16:125-33.
    • (2005) J Biomol Tech , vol.16 , pp. 125-133
    • Holbrook, J.F.1    Stabley, D.2    Sol-Church, K.3
  • 32
    • 0038781878 scopus 로고    scopus 로고
    • Unbiased whole-genome amplification directly from clinical samples
    • Hosono S, Faruqi AF, Dean FB, et al. Unbiased whole-genome amplification directly from clinical samples. Genome Res 2003;13:954-64.
    • (2003) Genome Res , vol.13 , pp. 954-964
    • Hosono, S.1    Faruqi, A.F.2    Dean, F.B.3
  • 33
    • 23044440133 scopus 로고    scopus 로고
    • Detection of mutations in whole genome-amplified DNA from laser-microdissected neurons
    • Pamphlett R, Heath PR, Holden H, et al. Detection of mutations in whole genome-amplified DNA from laser-microdissected neurons. J Neurosci Methods 2005;147:65-7.
    • (2005) J Neurosci Methods , vol.147 , pp. 65-67
    • Pamphlett, R.1    Heath, P.R.2    Holden, H.3
  • 34
    • 14944380100 scopus 로고    scopus 로고
    • Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacement-based whole-genome amplification
    • Tzvetkov MV, Becker C, Kulle B, et al. Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacement-based whole-genome amplification. Electrophoresis 2005;26:710-15.
    • (2005) Electrophoresis , vol.26 , pp. 710-715
    • Tzvetkov, M.V.1    Becker, C.2    Kulle, B.3
  • 35
    • 26844442640 scopus 로고    scopus 로고
    • Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. (Electronic article)
    • Bergen AW, Qi Y, Haque KA, et al. Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance. (Electronic article). BMC Biotechnol 2005;5:24.
    • (2005) BMC Biotechnol , vol.5 , pp. 24
    • Bergen, A.W.1    Qi, Y.2    Haque, K.A.3
  • 36
    • 34548080295 scopus 로고    scopus 로고
    • Whole-genome amplification of oral rinse self-collected DNA in a population-based case-control study of breast cancer
    • Liang X, Trentham-Dietz A, Titus-Ernstoff L, et al. Whole-genome amplification of oral rinse self-collected DNA in a population-based case-control study of breast cancer. Cancer Epidemiol Biomarkers Prev 2007;16:1610-14.
    • (2007) Cancer Epidemiol Biomarkers Prev , vol.16 , pp. 1610-1614
    • Liang, X.1    Trentham-Dietz, A.2    Titus-Ernstoff, L.3
  • 37
    • 9144265458 scopus 로고    scopus 로고
    • Design and standardization of PCR primers and protocols for detection of clonal immunoglobulin and T-cell receptor gene recombinations in suspect lymphoproliferations: Report of the BIOMED-2 Concerted Action BMH4-CT98-3936
    • van Dongen JJ, Langerak AW, Bruggemann M, et al. Design and standardization of PCR primers and protocols for detection of clonal immunoglobulin and T-cell receptor gene recombinations in suspect lymphoproliferations: report of the BIOMED-2 Concerted Action BMH4-CT98-3936. Leukemia 2003;17:2257-317.
    • (2003) Leukemia , vol.17 , pp. 2257-2317
    • van Dongen, J.J.1    Langerak, A.W.2    Bruggemann, M.3
  • 38
    • 34247632982 scopus 로고    scopus 로고
    • Whole genome amplification of buccal cytobrush DNA collected for molecular epidemiology studies
    • Moore LE, Bergen AW, Haque KA, et al. Whole genome amplification of buccal cytobrush DNA collected for molecular epidemiology studies. Biomarkers 2007;12:303-12.
    • (2007) Biomarkers , vol.12 , pp. 303-312
    • Moore, L.E.1    Bergen, A.W.2    Haque, K.A.3
  • 39
    • 33644876453 scopus 로고    scopus 로고
    • SNP500Cancer: A public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes
    • Packer BR, Yeager M, Burdett L, et al. SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes. Nucleic Acids Res 2006;34:D617-21.
    • (2006) Nucleic Acids Res , vol.34
    • Packer, B.R.1    Yeager, M.2    Burdett, L.3
  • 40
    • 2942615340 scopus 로고    scopus 로고
    • Collecting, archiving, and processing DNA from wildlife samples using FTA databasing paper. (Electronic article)
    • Smith LM, Burgoyne LA. Collecting, archiving, and processing DNA from wildlife samples using FTA databasing paper. (Electronic article). BMC Ecol 2004;4:4.
    • (2004) BMC Ecol , vol.4 , pp. 4
    • Smith, L.M.1    Burgoyne, L.A.2
  • 41
    • 0026517673 scopus 로고
    • False-negative results by polymerase chain reaction due to contamination by glove powder
    • de Lomas JG, Sunzeri FJ, Busch MP. False-negative results by polymerase chain reaction due to contamination by glove powder. Transfusion 1992;32:83-5.
    • (1992) Transfusion , vol.32 , pp. 83-85
    • de Lomas, J.G.1    Sunzeri, F.J.2    Busch, M.P.3
  • 42
    • 0026795669 scopus 로고
    • Analysis of mixed human/microbial DNA samples: A validation study of two PCR AMP-FLP typing methods
    • Lienert K, Fowler JC. Analysis of mixed human/microbial DNA samples: a validation study of two PCR AMP-FLP typing methods. Biotechniques 1992;13:276-81.
    • (1992) Biotechniques , vol.13 , pp. 276-281
    • Lienert, K.1    Fowler, J.C.2
  • 43
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 1997;63:3741-51.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 44
    • 0029834127 scopus 로고    scopus 로고
    • The retrieval of ancient human DNA sequences
    • Handt O, Krings M, Ward RH, et al. The retrieval of ancient human DNA sequences. Am J Hum Genet 1996;59:368-76.
    • (1996) Am J Hum Genet , vol.59 , pp. 368-376
    • Handt, O.1    Krings, M.2    Ward, R.H.3
  • 45
    • 0031449040 scopus 로고    scopus 로고
    • Evaluation of five polymorphic microsatellite markers for typing DNA from decomposed human tissues - correlation between the size of the alleles and that of the template DNA
    • Takahashi M, Kato Y, Mukoyama H, et al. Evaluation of five polymorphic microsatellite markers for typing DNA from decomposed human tissues - correlation between the size of the alleles and that of the template DNA. Forensic Sci Int 1997;90:1-9.
    • (1997) Forensic Sci Int , vol.90 , pp. 1-9
    • Takahashi, M.1    Kato, Y.2    Mukoyama, H.3
  • 46
    • 33745745782 scopus 로고    scopus 로고
    • Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors
    • Kontanis EJ, Reed FA. Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors. J Forensic Sci 2006;51:795-804.
    • (2006) J Forensic Sci , vol.51 , pp. 795-804
    • Kontanis, E.J.1    Reed, F.A.2
  • 47
    • 2442707739 scopus 로고    scopus 로고
    • Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
    • Barker DL, Hansen MS, Faruqi AF, et al. Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel. Genome Res 2004;14:901-7.
    • (2004) Genome Res , vol.14 , pp. 901-907
    • Barker, D.L.1    Hansen, M.S.2    Faruqi, A.F.3
  • 48
    • 0242475336 scopus 로고    scopus 로고
    • Whole genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
    • Lasken RS, Egholm M. Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens. Trends Biotechnol 2003;21:531-5.
    • (2003) Trends Biotechnol , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 49
    • 24344458983 scopus 로고    scopus 로고
    • Whole-genome amplification: Relative efficiencies of the current methods
    • Sun G, Kaushal R, Pal P, et al. Whole-genome amplification: relative efficiencies of the current methods. Leg Med (Tokyo) 2005;7:279-86.
    • (2005) Leg Med (Tokyo) , vol.7 , pp. 279-286
    • Sun, G.1    Kaushal, R.2    Pal, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.