Accelerating string set matching in FPGA hardware for bioinformatics research

BMC Bioinformatics

Volumn 9, Issue , 2008, Pages

  Dandass, Yoginder S ^a,b   Burgess, Shane C ^a,c   Lawrence, Mark ^a   Bridges, Susan M ^a,b  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

^c MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AHO-CORASICK ALGORITHMS; COMPUTATIONAL PROTEOMICS; FPGA IMPLEMENTATIONS; LOGIC RESOURCES; PEPTIDE SEQUENCES; PROTEIN SEQUENCES; RANDOM ACCESS MEMORY; STORAGE EFFICIENCY;

AMINO ACIDS; BIOINFORMATICS; GENES; MOLECULAR BIOLOGY; PEPTIDES; RANDOM ACCESS STORAGE;

FIELD PROGRAMMABLE GATE ARRAYS (FPGA);

RNA; PROTEOME;

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER; COMPUTER PROGRAM; GENE MAPPING; OPEN READING FRAME; PROCESS OPTIMIZATION; PROTEIN MOTIF; PROTEOMICS; RNA TRANSLATION; SEQUENCE ALIGNMENT; ALGORITHM; ARTIFICIAL NEURAL NETWORK; EQUIPMENT DESIGN; GENE EXPRESSION PROFILING; INFORMATION RETRIEVAL; INSTRUMENTATION; LOGIC; METHODOLOGY; SEQUENCE ANALYSIS; THEORETICAL MODEL;

ALGORITHMS; COMPUTERS; EQUIPMENT DESIGN; GENE EXPRESSION PROFILING; INFORMATION STORAGE AND RETRIEVAL; LOGIC; MODELS, THEORETICAL; NEURAL NETWORKS (COMPUTER); OPEN READING FRAMES; PROTEOME; PROTEOMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 43249103147     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-197     Document Type: Article

References (31)