Fast projection matching for cryo-electron microscopy image reconstruction

Journal of Structural Biology

Volumn 162, Issue 2, 2008, Pages 324-334

  Estrozi, Leandro Farias ^a   Navaza, Jorge ^a  

^a INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

3D reconstruction; Cryo electron microscopy; EM methods; Image processing; Orientation assignment; Projection matching; Single particles; Software comparison; Symmetry adapted functions; View assignment

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CRYOELECTRON MICROSCOPY; ELECTRON MICROSCOPY; FOURIER ANALYSIS; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE RECONSTRUCTION; NONHUMAN; PRIORITY JOURNAL; STATISTICAL MODEL; THREE DIMENSIONAL IMAGING;

CRYOELECTRON MICROSCOPY; FOURIER ANALYSIS; IMAGE PROCESSING, COMPUTER-ASSISTED; MODELS, BIOLOGICAL;

EID: 43049111744     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2008.01.014     Document Type: Article

References (13)

1. Baker T.S., and Cheng R.H. A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy. Journal of Structural Biology 116 (1996) 120-130
2. Bruemmer A., Scholari F., Lopez-Ferber M., Conway J.F., and Hewat E.A. Structure of an insect parvovirus (Junonia coenia densovirus) determined by cryo-electron microscopy. Journal of Molecular Biology 347 4 (2005) 791-801
3. Estrozi, L.F., Neumann, E., Squires, G., Rozas-Dennis, G., Costabel, M., Rey, F.A., Guérin, D.M., Navaza, J., 2008. Phasing of the Triatoma virus diffraction data using a cryo-electron microscopy reconstruction. Virology, in press.
4. Frigo M., and Johnson S.G. The design and implementation of FFTW3. Proceedings of the IEEE 93 2 (2005) 216-231
5. Grigorieff N. FREALIGN: high-resolution refinement of single particle structures. Journal of Structural Biology 157 1 (2007) 117-125
6. Healy Jr. D.M., Rockmore D., Kostelec P.J., and Moore S.S.B. FFTs for the 2-sphere-improvements and variations. The Journal of Fourier Analysis and Applications 9 4 (2003) 341-385
7. Heymann J.B., and Belnap D.M. Bsoft: image processing and molecular modeling for electron microscopy. Journal of Structural Biology 157 1 (2007) 3-18
8. Ji Y., Marinescu D.C., Zhang W., Zhang X., Yan X., and Baker T.S. A model-based parallel origin and orientation refinement algorithm for cryotem and its application to the study of virus structures. Journal of Structural Biology 154 (2006) 1-19
9. Kovacs J.A., and Wriggers W. Fast rotational matching. Acta Crystallographica D 58 8 (2002) 1282-1286
10. Kovacs J.A., Abagyan R., and Yeager M. Fast bessel matching. Journal of Computational and Theoretical Nanoscience 4 1 (2007) 84-95
11. Navaza J. On the three-dimensional reconstruction of icosahedral particles. Journal of Structural Biology 144 1-2 (2003) 13-23
12. Risbo T. Fourier transform summation of legendre series and d-functions. Journal of Geodesy 70 7 (1996) 383-396
13. Trapani S., and Navaza J. Calculation of spherical harmonics and Wigner d functions by FFT. Applications to fast rotational matching in molecular replacement and implementation into AMoRe. Acta Crystallographica A 62 4 (2006) 262-269