Identification of putative endogenous retroviruses actively transcribed in the brain

Virus Genes

Volumn 36, Issue 3, 2008, Pages 439-447

  Kwon, Deug Nam ^a   Nguyen, Sally ^a   Chew, Alex ^a   Hsu, Karen ^a   Greenhalgh, David ^a   Cho, Kiho ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Brain; C57BL 6J strain; Endogenous retroviruses; MuERV; Transcription

Indexed keywords

DNA POLYMERASE; GAG PROTEIN; POLYPEPTIDE;

ADRENAL GLAND; ANIMAL TISSUE; ARTICLE; BIOLOGY; BRAIN TISSUE; CHROMOSOME 10; CHROMOSOME 4; CHROMOSOME 8; CONTROLLED STUDY; DNA FLANKING REGION; ENDOGENOUS RETROVIRUS; FEMALE; GENE REPLICATION; GENETIC TRANSCRIPTION; GENOMICS; HEART; MOUSE; MUSCLE TISSUE; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOPHYSIOLOGY; PRIORITY JOURNAL; PROTEIN EXPRESSION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SALIVARY GLAND; TRANSCRIPTION INITIATION; VIRUS IDENTIFICATION;

ANIMALS; BASE SEQUENCE; BRAIN; CHROMOSOME MAPPING; CHROMOSOMES, MAMMALIAN; ENDOGENOUS RETROVIRUSES; FEMALE; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; HUMANS; MICE; MICE, INBRED C57BL; MOLECULAR SEQUENCE DATA; MURINE ACQUIRED IMMUNODEFICIENCY SYNDROME; PHYLOGENY; PROMOTER REGIONS (GENETICS); PROVIRUSES; RETROVIRIDAE INFECTIONS; SEQUENCE ALIGNMENT; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

MURINAE; MUS;

EID: 43049111700     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-008-0216-2     Document Type: Article

References (34)

1. D.N. Cooper, Nature encyclopedia of the human genome (Nature Publishing Group New York, 2003)
2. E.S. Lander, L.M. Linton, B. Birren, C. Nusbaum, M.C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J.P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J.C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R.H. Waterston, R.K. Wilson, L.W. Hillier, J.D. McPherson, M.A. Marra, E.R. Mardis, L.A. Fulton, A.T. Chinwalla, K.H. Pepin, W.R. Gish, S.L. Chissoe, M.C. Wendl, K.D. Delehaunty, T.L. Miner, A. Delehaunty, J.B. Kramer, L.L. Cook, R.S. Fulton, D.L. Johnson, P.J. Minx, S.W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J.F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R.A. Gibbs, D.M. Muzny, S.E. Scherer, J.B. Bouck, E.J. Sodergren, K.C. Worley, C.M. Rives, J.H. Gorrell, M.L. Metzker, S.L. Naylor, R.S. Kucherlapati, D.L. Nelson, G.M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D.R. Smith, L. Doucette-Stamm, M. Rubenfield, K. Weinstock, H.M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R.W. Davis, N.A. Federspiel, A.P. Abola, M.J. Proctor, R.M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D.R. Cox, M.V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G.A. Evans, M. Athanasiou, R. Schultz, B.A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W.R. McCombie, de la M. Bastide, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J.A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D.G. Brown, C.B. Burge, L. Cerutti, H.C. Chen, D. Church, M. Clamp, R.R. Copley, T. Doerks, S.R. Eddy, E.E. Eichler, T.S. Furey, J. Galagan, J.G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L.S. Johnson, T.A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W.J. Kent, P. Kitts, E.V. Koonin, I. Korf, D. Kulp, D. Lancet, T.M. Lowe, A. McLysaght, T. Mikkelsen, J.V. Moran, N. Mulder, V.J. Pollara, C.P. Ponting, G. Schuler, J. Schultz, G. Slater, A.F. Smit, E. Stupka, J. Szustakowski, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y.I. Wolf, K.H. Wolfe, S.P. Yang, R.F. Yeh, F. Collins, M.S. Guyer, J. Peterson, A. Felsenfeld, K.A. Wetterstrand, A. Patrinos, M.J. Morgan, de P. Jong, J.J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y.J. Chen, Nature 409, 860-921 (2001)
3. R.H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J.F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, P. An, S.E. Antonarakis, J. Attwood, R. Baertsch, J. Bailey, K. Barlow, S. Beck, E. Berry, B. Birren, T. Bloom, P. Bork, M. Botcherby, N. Bray, M.R. Brent, D.G. Brown, S.D. Brown, C. Bult, J. Burton, J. Butler, R.D. Campbell, P. Carninci, S. Cawley, F. Chiaromonte, A.T. Chinwalla, D.M. Church, M. Clamp, C. Clee, F.S. Collins, L.L. Cook, R.R. Copley, A. Coulson, O. Couronne, J. Cuff, V. Curwen, T. Cutts, M. Daly, R. David, J. Davies, K.D. Delehaunty, J. Deri, E.T. Dermitzakis, C. Dewey, N.J. Dickens, M. Diekhans, S. Dodge, I. Dubchak, D.M. Dunn, S.R. Eddy, L. Elnitski, R.D. Emes, P. Eswara, E. Eyras, A. Felsenfeld, G.A. Fewell, P. Flicek, K. Foley, W.N. Frankel, L.A. Fulton, R.S. Fulton, T.S. Furey, D. Gage, R.A. Gibbs, G. Glusman, S. Gnerre, N. Goldman, L. Goodstadt, D. Grafham, T.A. Graves, E.D. Green, S. Gregory, R. Guigo, M. Guyer, R.C. Hardison, D. Haussler, Y. Hayashizaki, L.W. Hillier, A. Hinrichs, W. Hlavina, T. Holzer, F. Hsu, A. Hua, T. Hubbard, A. Hunt, I. Jackson, D.B. Jaffe, L.S. Johnson, M. Jones, T.A. Jones, A. Joy, M. Kamal, E.K. Karlsson, D. Karolchik, A. Kasprzyk, J. Kawai, E. Keibler, C. Kells, W.J. Kent, A. Kirby, D.L. Kolbe, I. Korf, R.S. Kucherlapati, E.J. Kulbokas, D. Kulp, T. Landers, J.P. Leger, S. Leonard, I. Letunic, R. Levine, J. Li, M. Li, C. Lloyd, S. Lucas, B. Ma, D.R. Maglott, E.R. Mardis, L. Matthews, E. Mauceli, J.H. Mayer, M. McCarthy, W.R. McCombie, S. McLaren, K. McLay, J.D. McPherson, J. Meldrim, B. Meredith, J.P. Mesirov, W. Miller, T.L. Miner, E. Mongin, K.T. Montgomery, M. Morgan, R. Mott, J.C. Mullikin, D.M. Muzny, W.E. Nash, J.O. Nelson, M.N. Nhan, R. Nicol, Z. Ning, C. Nusbaum, O(Connor M.J., Y. Okazaki, K. Oliver, E. Overton-Larty, L. Pachter, G. Parra, K.H. Pepin, J. Peterson, P. Pevzner, R. Plumb, C.S. Pohl, A. Poliakov, T.C. Ponce, C.P. Ponting, S. Potter, M. Quail, A. Reymond, B.A. Roe, K.M. Roskin, E.M. Rubin, A.G. Rust, R. Santos, V. Sapojnikov, B. Schultz, J. Schultz, M.S. Schwartz, S. Schwartz, C. Scott, S. Seaman, S. Searle, T. Sharpe, A. Sheridan, R. Shownkeen, S. Sims, J.B. Singer, G. Slater, A. Smit, D.R. Smith, B. Spencer, A. Stabenau, N. Stange-Thomann, C. Sugnet, M. Suyama, G. Tesler, J. Thompson, D. Torrents, E. Trevaskis, J. Tromp, C. Ucla, A. Ureta-Vidal, J.P. Vinson, A. Von, C. Niederhausern, C.M. Wade, M. Wall, R.J. Weber, R.B. Weiss, M.C. Wendl, A.P. West, K. Wetterstrand, R. Wheeler, S. Whelan, J. Wierzbowski, D. Willey, S. Williams, R.K. Wilson, E. Winter, K.C. Worley, D. Wyman, S. Yang, S.P. Yang, E.M. Zdobnov, M.C. Zody, E.S. Lander, Nature 420, 520-562 (2002)
4. K. Cho, T. Pham, L. Adamson, D. Greenhalgh, J Surg Res 115, 318-324 (2003)
5. K. Cho, L.K. Adamson, D.G. Greenhalgh, J Surg Res 104, 53-62 (2002)
6. B. Conrad, R.N. Weissmahr, J. Boni, R. Arcari, J. Schupbach, B. Mach, Cell 90, 303-313 (1997)
7. O. Frank, M. Giehl, C. Zheng, R. Hehlmann, C. Leib-Mosch, W. Seifarth, J Virol 79, 10890-10901 (2005)
8. H. Karlsson, S. Bachmann, J. Schroder, J. McArthur, E.F. Torrey, R.H. Yolken, Proc Natl Acad Sci USA 98, 4634-4639 (2001)
9. N. Talal, R.F. Garry, P.H. Schur, S. Alexander, M.J. Dauphinee, I.H. Livas, A. Ballester, M. Takei, H. Dang, J Clin Invest 85, 1866-1871 (1990)
10. H.B. Urnovitz, W.H. Murphy, Clin Microbiol Rev 9, 72-99 (1996)
11. J.M. Antony, van G. Marle, W. Opii, D.A. Butterfield, F. Mallet, V.W. Yong, J.L. Wallace, R.M. Deacon, K. Warren, C. Power, Nat Neurosci 7, 1088-1095 (2004)
12. P.E. Kowalski, J.D. Freeman, D.L. Mager, Genomics 57, 371-379 (1999)
13. P.E. Kowalski, D.L. Mager, J Virol 72, 6164-6168 (1998)
14. D.L. Mager, D.G. Hunter, M. Schertzer, J.D. Freeman, Genomics 59, 255-263 (1999)
15. C.P. Walsh, J.R. Chaillet, T.H. Bestor, Nat Genet 20, 116-117 (1998)
16. J.A. Yoder, C.P. Walsh, T.H. Bestor, Trends Genet 13, 335-340 (1997)
17. A. Nakamura, Y. Okazaki, J. Sugimoto, T. Oda, Y. Jinno, J Hum Genet 48, 575-581 (2003)
18. Y. Stauffer, S. Marguerat, F. Meylan, C. Ucla, N. Sutkowski, B. Huber, T. Pelet, B. Conrad, Immunity 15, 591-601 (2001)
19. N. Sutkowski, B. Conrad, D.A. Thorley-Lawson, B.T. Huber, Immunity 15, 579-589 (2001)
20. K. Cho, D. Greenhalgh, Virus Res 93, 189-198 (2003)
21. K. Tomonaga, J.M. Coffin, J Virol 73, 4327-4340 (1999)
22. S. Kumar, K. Tamura, M. Nei, Brief Bioinform 5, 150-163 (2004)
23. N. Saitou, M. Nei, Mol Biol Evol 4, 406-425 (1987)
24. K. Tomonaga, J.M. Coffin, J Virol 72, 8289-8300 (1998)
25. E.D. Sverdlov, Bioessays 22, 161-171 (2000)
26. F. Harada, G.G. Peters, J.E. Dahlberg, J Biol Chem 254, 10979-10985 (1979)
27. K.N. Nikbakht, C.Y. Ou, L.R. Boone, P.L. Glover, W.K. Yang, J Virol 54, 889-893 (1985)
28. B. Weasner, C. Salzer, J.P. Kumar, Dev Biol 303, 756-771 (2007)
29. D. Bornemann, E. Miller, J. Simon, Development 122, 1621-1630 (1996)
30. R. Saiki, A. Nagata, T. Kainou, H. Matsuda, M. Kawamukai, FEBS J 272, 5606-5622 (2005)
31. M. Huang, P. Jolicoeur, J Virol 64, 5764-5772 (1990)
32. S. Gayama, B.A. Vaupel, O. Kanagawa, Int Immunol 7, 861-868 (1995)
33. M.A. Ramirez, E. Pericuesta, R. Fernandez-Gonzalez, P. Moreira, B. Pintado, A. Gutierrez-Adan, Reprod Biol Endocrinol 4, 55 (2006)
34. J. Pothlichet, M. Mangeney, T. Heidmann, Int J Cancer 119, 1869-1877 (2006)