-
1
-
-
33646365379
-
Cloning, expression, and characterization of bacterial L-arabinose 1-dehydrogenase involved in an alternative pathway of L-arabinose metabolism
-
S. Watanabe T. Kodak K. Makino Cloning, expression, and characterization of bacterial L-arabinose 1-dehydrogenase involved in an alternative pathway of L-arabinose metabolism J. Biol. Chem. 281 2006 2612 2623
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 2612-2623
-
-
Watanabe, S.1
Kodak, T.2
Makino, K.3
-
3
-
-
33845917013
-
Identification and characterization of L-arabonate dehydratase, L-2-keto-3-deoxyarabonate dehydratase, and L-arabinolactonase involved in an alternative pathway of L-arabinose metabolism. Novel evolutionary insight into sugar metabolism
-
S. Watanabe N. Shimada K. Tajima T. Kodaki K. Makino Identification and characterization of L-arabonate dehydratase, L-2-keto-3-deoxyarabonate dehydratase, and L-arabinolactonase involved in an alternative pathway of L-arabinose metabolism. Novel evolutionary insight into sugar metabolism J. Biol. Chem. 281 2006 33521 33536
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 33521-33536
-
-
Watanabe, S.1
Shimada, N.2
Tajima, K.3
Kodaki, T.4
Makino, K.5
-
4
-
-
33749399255
-
A novel alpha-ketoglutaric semialdehyde dehydrogenase: evolutionary insight into an alternative pathway of bacterial L-arabinose metabolism
-
S. Watanabe T. Kodaki K. Makino A novel alpha-ketoglutaric semialdehyde dehydrogenase: evolutionary insight into an alternative pathway of bacterial L-arabinose metabolism J. Biol. Chem. 281 2006 28876 28888
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 28876-28888
-
-
Watanabe, S.1
Kodaki, T.2
Makino, K.3
-
6
-
-
34248186748
-
Alpha-ketoglutaric semialdehyde dehydrogenase isozymes involved in metabolic pathways of D-glucarate, D-galactarate, and hydroxy-L-proline: molecular and metabolic convergent evolution
-
S. Watanabe M. Yamada I. Ohtsu K. Makino Alpha-ketoglutaric semialdehyde dehydrogenase isozymes involved in metabolic pathways of D-glucarate, D-galactarate, and hydroxy-L-proline: molecular and metabolic convergent evolution J. Biol. Chem. 282 2007 6685 6695
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 6685-6695
-
-
Watanabe, S.1
Yamada, M.2
Ohtsu, I.3
Makino, K.4
-
7
-
-
0023021760
-
The organization of the araBAD operon of Escherichia coli
-
N. Lee W. Gielow R. Martin E. Hamilton A. Fowler The organization of the araBAD operon of Escherichia coli Gene 47 1986 231 244
-
(1986)
Gene
, vol.47
, pp. 231-244
-
-
Lee, N.1
Gielow, W.2
Martin, R.3
Hamilton, E.4
Fowler, A.5
-
8
-
-
0021154881
-
Cloning and characterization of the xyl genes from Escherichia coli
-
S.A. Rosenfeld P.E. Stevis N.W. Ho Cloning and characterization of the xyl genes from Escherichia coli Mol. Gen. Genet. 194 1984 410 415
-
(1984)
Mol. Gen. Genet.
, vol.194
, pp. 410-415
-
-
Rosenfeld, S.A.1
Stevis, P.E.2
Ho, N.W.3
-
9
-
-
36949081532
-
Metabolism of D-xylose by moulds
-
C. Chiang S.G. Knight Metabolism of D-xylose by moulds Nature 188 1960 79 81
-
(1960)
Nature
, vol.188
, pp. 79-81
-
-
Chiang, C.1
Knight, S.G.2
-
13
-
-
84944812409
-
Improved Fourier coefficients for maps using phases from partial structures with errors
-
R.J. Read Improved Fourier coefficients for maps using phases from partial structures with errors Acta Crystallogr. A 42 1986 140 149
-
(1986)
Acta Crystallogr. A
, vol.42
, pp. 140-149
-
-
Read, R.J.1
-
14
-
-
0014198578
-
Studies on the mechanism of action of 2-keto-3-deoxy-L-arabonate dehydratase. The participation of an enzyme-substrate Schiff base in a dehydration
-
D. Portsmouth A.C. Stoolmiller R.H. Abeles Studies on the mechanism of action of 2-keto-3-deoxy-L-arabonate dehydratase. The participation of an enzyme-substrate Schiff base in a dehydration J. Biol. Chem. 242 1967 2751 2759
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 2751-2759
-
-
Portsmouth, D.1
Stoolmiller, A.C.2
Abeles, R.H.3
-
15
-
-
33847726934
-
Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure, and pharmacokinetics
-
R.L. Bateman J. Ashworth J.F. Witte L.J. Baker P. Bhanumoorthy D.E. Timm Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure, and pharmacokinetics Biochem. J. 402 2007 251 260
-
(2007)
Biochem. J.
, vol.402
, pp. 251-260
-
-
Bateman, R.L.1
Ashworth, J.2
Witte, J.F.3
Baker, L.J.4
Bhanumoorthy, P.5
Timm, D.E.6
-
16
-
-
85120263956
-
-
Mizutani, H., & Kunishima, M. (2006). 1WZO: Crystal structure of HpcE from Thermus thermophilus HB8. www.rcsb.org .
-
-
-
-
17
-
-
34548447255
-
Purification, crystallization and preliminary X-ray analysis of the fumarylacetoacetase family member TTHA0809 from Thermus thermophilus HB8
-
H. Mizutani N. Kunishima Purification, crystallization and preliminary X-ray analysis of the fumarylacetoacetase family member TTHA0809 from Thermus thermophilus HB8 Acta Crystallogr. F 63 2007 792 794
-
(2007)
Acta Crystallogr. F
, vol.63
, pp. 792-794
-
-
Mizutani, H.1
Kunishima, N.2
-
18
-
-
85120272247
-
-
Kim, Y., Joachimiak, A., Edwards, A., Skarina, T., & Savchenko, A. (2003). 1NR9: crystal structure of Escherichia coli putative isomerase EC1262 (APC5008). www.rcsb.org .
-
-
-
-
20
-
-
85120270873
-
-
Eswaramoorthy, S., Kumaran, D., Daniels, B., Studier, F. W., & Swaminathan, S. (2003). 1NKQ: Crystal Structure of Yeast Hypothetical Protein YNQ8_YEAST. www.rcsb.org .
-
-
-
-
21
-
-
0037022802
-
The crystal structure of HpcE, a bifunctional decarboxylase/isomerase with a multifunctional fold
-
J.R. Tame K. Namba E.J. Dodson D.I. Roper The crystal structure of HpcE, a bifunctional decarboxylase/isomerase with a multifunctional fold Biochemistry 41 2002 2982 2989
-
(2002)
Biochemistry
, vol.41
, pp. 2982-2989
-
-
Tame, J.R.1
Namba, K.2
Dodson, E.J.3
Roper, D.I.4
-
22
-
-
0032518288
-
Purification, characterisation and reaction mechanism of monofunctional 2-hydroxypentadienoic acid hydratase from Escherichia coli
-
J.R. Pollard T.D. Bugg Purification, characterisation and reaction mechanism of monofunctional 2-hydroxypentadienoic acid hydratase from Escherichia coli Eur. J. Biochem. 251 1998 98 106
-
(1998)
Eur. J. Biochem.
, vol.251
, pp. 98-106
-
-
Pollard, J.R.1
Bugg, T.D.2
-
23
-
-
85120261363
-
-
Fedorov, A. A., Fedorov, E. V., Sharp, A., & Almo, S. C. (2004). 1SV6: Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia coli . www.rcsb.org .
-
-
-
-
24
-
-
0030660581
-
A genomic perspective on protein families
-
R.L. Tatusov E.V. Koonin D.J. Lipman A genomic perspective on protein families Science 278 1997 631 637
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
25
-
-
0035805603
-
Mechanistic inferences from the crystal structure of fumarylacetoacetate hydrolase with a bound phosphorus-based inhibitor
-
R.L. Bateman P. Bhanumoorthy J.F. Witte R.W. McClard M. Grompe D.E. Timm Mechanistic inferences from the crystal structure of fumarylacetoacetate hydrolase with a bound phosphorus-based inhibitor J. Biol. Chem. 276 2001 15284 15291
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15284-15291
-
-
Bateman, R.L.1
Bhanumoorthy, P.2
Witte, J.F.3
McClard, R.W.4
Grompe, M.5
Timm, D.E.6
-
26
-
-
0035805626
-
Structural and functional analysis of missense mutations in fumarylacetoacetate hydrolase, the gene deficient in hereditary tyrosinemia type 1
-
A. Bergeron M. D'Astous D.E. Timm R.M. Tanguay Structural and functional analysis of missense mutations in fumarylacetoacetate hydrolase, the gene deficient in hereditary tyrosinemia type 1 J. Biol. Chem. 276 2001 15225 15231
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15225-15231
-
-
Bergeron, A.1
D'Astous, M.2
Timm, D.E.3
Tanguay, R.M.4
-
27
-
-
0014028220
-
Formation of alpha-ketoglutaric semialdehyde from L-2-keto-3-deoxyarabonic acid and isolation of L-2-keto-3-deoxyarabonate dehydratase from Pseudomonas saccharophila
-
A.C. Stoolmiller R.H. Abeles Formation of alpha-ketoglutaric semialdehyde from L-2-keto-3-deoxyarabonic acid and isolation of L-2-keto-3-deoxyarabonate dehydratase from Pseudomonas saccharophila J. Biol. Chem. 241 1966 5764 5771
-
(1966)
J. Biol. Chem.
, vol.241
, pp. 5764-5771
-
-
Stoolmiller, A.C.1
Abeles, R.H.2
-
28
-
-
0031016796
-
Isolation and characterization of a xylose-dependent promoter from Caulobacter crescentus
-
A.C. Meisenzahl L. Shapiro U. Jenal Isolation and characterization of a xylose-dependent promoter from Caulobacter crescentus J. Bacteriol. 179 1997 592 600
-
(1997)
J. Bacteriol.
, vol.179
, pp. 592-600
-
-
Meisenzahl, A.C.1
Shapiro, L.2
Jenal, U.3
-
30
-
-
0014674485
-
A complementation analysis of the restriction and modification of DNA in Escherichia coli
-
H.W. Boyer R. Rouland-Dussoix A complementation analysis of the restriction and modification of DNA in Escherichia coli J. Mol. Biol. 41 1969 459 472
-
(1969)
J. Mol. Biol.
, vol.41
, pp. 459-472
-
-
Boyer, H.W.1
Rouland-Dussoix, R.2
-
32
-
-
10744223343
-
Purification, crystallization and preliminary crystallographic analysis of phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus
-
J. Akerboom A.P. Turnbull D. Hargreaves M. Fisher D. de Geus S.E. Sedelnikova Purification, crystallization and preliminary crystallographic analysis of phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus Acta Crystallogr. D 59 2003 1822 1823
-
(2003)
Acta Crystallogr. D
, vol.59
, pp. 1822-1823
-
-
Akerboom, J.1
Turnbull, A.P.2
Hargreaves, D.3
Fisher, M.4
de Geus, D.5
Sedelnikova, S.E.6
-
33
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
A. Otwinowski W. Minor Processing of X-ray diffraction data collected in oscillation mode Meth Enzymol. 276 1997 307 326
-
(1997)
Meth Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, A.1
Minor, W.2
-
35
-
-
0030809260
-
wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models
-
A. Perrakis T.K. Sixma K.S. Wilson V.S. Lamzin wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models Acta Crystallogr. D 53 1997 448 455
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 448-455
-
-
Perrakis, A.1
Sixma, T.K.2
Wilson, K.S.3
Lamzin, V.S.4
-
36
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
A. Perrakis R. Morris V.S. Lamzin Automated protein model building combined with iterative structure refinement Nature Struct. Biol. 6 1999 458 463
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
37
-
-
0032790081
-
XtalView/Xfit – a versatile program for manipulating atomic coordinates and electron density
-
D.E. McRee XtalView/Xfit – a versatile program for manipulating atomic coordinates and electron density J. Struct. Biol. 125 1999 156 165
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
38
-
-
0000246042
-
Simulated annealing in crystallography
-
A.T. Brünger Simulated annealing in crystallography Annu. Rev. Phys. Chem. 42 1991 197 223
-
(1991)
Annu. Rev. Phys. Chem.
, vol.42
, pp. 197-223
-
-
Brünger, A.T.1
-
40
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
G.N. Murshudov A.A. Vagin E.J. Dodson Refinement of macromolecular structures by the maximum-likelihood method Acta Crystallogr. D 53 1997 240 255
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
41
-
-
0001083794
-
A gentle vapor-diffusion technique for cross-linking of protein crystals for cryocrystallography
-
C.J. Lusty A gentle vapor-diffusion technique for cross-linking of protein crystals for cryocrystallography J. Appl. Crystallogr. 32 1999 106 112
-
(1999)
J. Appl. Crystallogr.
, vol.32
, pp. 106-112
-
-
Lusty, C.J.1
-
42
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
W. Kabsch Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants J. Appl. Crystallogr. 26 1993 795 800
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
43
-
-
0029785147
-
Mapping the protein universe
-
L. Holm C. Sander Mapping the protein universe Science 273 1996 595 603
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
44
-
-
33646195686
-
Detection of protein assemblies in crystals
-
E. Krissinel K. Henrick Detection of protein assemblies in crystals M.R. Berthold CompLife 2005 vol. 3695 2005 Springer-Verlag Berlin and Heidelberg 163 174
-
(2005)
, pp. 163-174
-
-
Krissinel, E.1
Henrick, K.2
-
45
-
-
33747829924
-
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee
-
F. Armougom S. Moretti O. Poirot S. Audic P. Dumas B. Schaeli Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee Nucleic Acids Res. 34 2006 W604 W608
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W604-W608
-
-
Armougom, F.1
Moretti, S.2
Poirot, O.3
Audic, S.4
Dumas, P.5
Schaeli, B.6
-
46
-
-
0003845223
-
The PyMol Molecular Graphics System
-
W.L. DeLano The PyMol Molecular Graphics System 2002 DeLano Scientific San Carlos, CA, USA
-
(2002)
-
-
DeLano, W.L.1
-
47
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
W. Kabsch C. Sander Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|