Detection and characterization of human caliciviruses associated with sporadic acute diarrhea in adults in Djibouti (Horn of Africa)

American Journal of Tropical Medicine and Hygiene

Volumn 78, Issue 3, 2008, Pages 522-526

  Maslin, Jérôme ^a,e   Nicand, Elisabeth ^b   Ambert Balay, Katia ^c   Fouet, Christine ^b   Kaplon, Jérôme ^c   Haus, Rachel ^d   Pothier, Pierre ^c   Kohli, Evelyne ^c  

^a Laboratoire de Biologie Clinique   (Djibouti)

^b University of Paris Descartes   (France)

^c HÔPITAL DU BOCAGE   (France)

^d SERVICE D ENDOCRINOLOGIE   (France)

^e Military Teaching Hospital Sainte Anne   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACUTE DIARRHEA; ADENOVIRUS; ADOLESCENT; ADULT; ARTICLE; ASTROVIRUS; CONTROLLED STUDY; DIAGNOSTIC PROCEDURE; DJIBOUTI; ENZYME IMMUNOASSAY; HUMAN; MAJOR CLINICAL STUDY; NOROVIRUS; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SAPOVIRUS; VIRAL GASTROENTERITIS; VIRUS DETECTION; VIRUS STRAIN; CALICIVIRUS; DIARRHEA; FECES; FEMALE; GENETICS; ISOLATION AND PURIFICATION; MALE; MIDDLE AGED; PHYLOGENY; VIROLOGY; VIRUS INFECTION;

ASTROVIRIDAE; MIRIDAE; ROTAVIRUS A;

ADOLESCENT; ADULT; CALICIVIRIDAE; CALICIVIRIDAE INFECTIONS; DIARRHEA; DJIBOUTI; FECES; FEMALE; HUMANS; MALE; MIDDLE AGED; PHYLOGENY;

EID: 42949108643     PISSN: 00029637     EISSN: None     Source Type: Journal    
DOI: 10.4269/ajtmh.2008.78.522     Document Type: Article

References (24)

1. Bon F, Fascia P, Dauvergne M, Tenenbaum D, Planson H, Petion AM, Pothier P, Kohli E, 1999. Prevalence of group A rotavirus, human calicivirus, astrovirus, and adenovirus type 40 and 41 infections among children with acute gastroenteritis in Dijon, France. J Clin Microbiol 37: 3055-3058.
2. Chikhi-Brachet R, Bon F, Toubiana L, Pothier P, Nicolas JC, Flahault A, Kohli E, 2002. Virus diversity in a winter epidemic of acute diarrhea in France. J Clin Microbiol 40: 4266-4272.
3. De Wit MA, Koopmans MP, Kortbeek LM, van Leeuwen NJ, Bartelds AI, van Duynhoven YT, 2001. Gastroenteritis in sentinel general practices, The Netherlands. Emerg Infect Dis 7: 82-91.
4. Fankhauser RL, Monroe SS, Noel JS, Humphrey CD, Bresee JS, Parashar UD, Ando T, Glass RI, 2002. Epidemiological and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States. J Infect Dis 186: 1-7.
5. Green KY, 2001. Human caliciviruses. Green KY, Kapikian RC, eds. Lippincott Williams and Wilkins Fields Virology. Fourth Edition. New York: Lippincott Williams and Wilkins, 841-873.
6. Kageyama T, Shinohara M, Uchida K, Fukushi S, Hoshino FB, Kojima S, Takeda N, Katayama K, 2004. Coexistence of multiple genotypes, including newly identified genotypes, in outbreaks of gastroenteritis due to Norovirus in Japan. J Clin Microbiol 42: 2988-2995.
7. Vinje J, Hamidjaja RA, Sobsey MD, 2004. Developmental and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods 116: 109-117.
8. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RL, Monroe SS, 2006. Norovirus classification and proposed strain nomenclature. Virology 15: 312-323.
9. Ouattara FS, Ekaza E, Kacou-n'douba A, Acoua-Koffi GC, Dosso C, 2004. Screening for Calicivirus in children under five years of age, in an Abidjan low-income district. Med Mal Infect 34: 566-567.
10. Armah GE, Gallimore CI, Binka FN, Asmah RH, Green J, Ugoji U, Anto F, Brown DWG, Gray J, 2006. Characterization of norovirus strains in rural Ghanaian children with acute diarrhea. J Med Virol 78: 1480-1485.
11. Dove W, Cunliffe NA, Gondwe JS, Broadhead RL, Molyneux ME, Nakagomi O, Hart CA, 2005. Detection and characterization of human caliciviruses in hospitalized children with acute gastroenteritis in Blantyre, Malawi. J Med Virol 77: 522-527.
12. Smit TK, Steele AD, Peenze I, Jiang X, Estes MK, 1997. Study of Norwalk virus and Mexico virus infections at Ga-Rakuwa Hospital, Ga-Rankuwa, South Africa. J Clin Microbiol 35: 2381-2385.
13. Bon F, Giraudon H, Sancey C, Barranger C, Joannes M, Pothier P, Kohli E, 2004. Development and evaluation of a new commercial test allowing the simultaneous detection of noroviruses. J Clin Microbiol 42: 2218-2220.
14. Vinje J, Koopmans MP, 1996. Molecular detection and epidemiology of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands. J Infect Dis 174: 610-615.
15. Le Guyader F, Estes MK, Hardy ME, Neill FH, Green J, Brown DW, Atmar RL, 1996. Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch Virol 141: 2225-2235.
16. Noel JS, Liu BL, Humphrey CD, Rodriguez EM, Lambden PR, Clarke IN, Dwyer DM, Ando T, Glass RI, Monroe SS, 1997. Parkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults. J Med Virol 52: 173-178.
17. Kojima S, Kageyama T, Fukushi S, Hoshino F, Shinohara M, Uchida K, Natori K, Takeda N, Katayama K, 2002. Genogroup-specific PCR primers for detection of Norwalk-like viruses. J Virol Methods 100: 107-114.
18. Ambert-Balay K, Bon F, Le Guyader F, Pothier P, Kohli E, 2005. Characterization of new recombinant noroviruses. J Clin Microbiol 43: 5179-5186.
19. Green J, Gallimore CI, Norcott JP, Lewis D, Brown DW, 1995. Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis. J Med Virol 47: 392-398.
20. Noel JS, Ando T, Leite JP, Green KY, Dingle KE, Estes MK. Seto Y, Monroe SS, Glass RI, 1997. Correlation of patient immune responses with genetically characterized small round-structured viruses involved in outbreaks of nonbacterial acute gastroenteritis in the United States, 1990 to 1995. J Med Virol 53: 372-383.
21. Koopmans M, Vennema H, Heersma H, van Strien E, van Duynhoven Y, Brown D, Reacher M, Lopman B, 2003. Early identification of common-source foodborne virus outbreaks in Europe. Emerg Infect Dis 9: 1136-1142.
22. Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa S, Martinez M, Morrow N, Ruiz-Palacios AL, Pickering GM, Jiang X, 2004. Genetic diversity among sapoviruses. Arch Virol 149: 1309-1323.
23. Bon F, Ambert-Balay K, Giraudon H, Kaplon J, Le Guyader S, Pommepuy M, Gallay A, Vaillant V, de Valk H, Chikhi-Brachet R, Flahaut A, Kohli E, 2005. Molecular epidemiology of caliciviruses detected in sporadic and outbreak cases of gastroenteritis in France from December 1998 to February 2004. J Clin Microbiol 43: 4659-4664.
24. Cheng AC, McDonald JR, Thielman NM, 2005. Infectious diarrhea in developed and developing countries. J Clin Gastroenterol 39: 757-773.