-
1
-
-
0036207282
-
Untranslated regions of mRNAs
-
REVIEWS0004
-
Mignone, F., Gissi, C., Liuni, S., and Pesole, G. (2002) Untranslated regions of mRNAs. Genome Biol 3, REVIEWS0004.
-
(2002)
Genome Biol
, vol.3
-
-
Mignone, F.1
Gissi, C.2
Liuni, S.3
Pesole, G.4
-
2
-
-
12144251356
-
The AU-rich transcriptome: More than interferons and cytokines, and its role in disease
-
Khabar, K. S. (2005) The AU-rich transcriptome: more than interferons and cytokines, and its role in disease. J Interferon Cytokine Res 25, 1-10.
-
(2005)
J Interferon Cytokine Res
, vol.25
, pp. 1-10
-
-
Khabar, K.S.1
-
3
-
-
33644876034
-
ARED 3.0: The large and diverse AU-rich transcriptome
-
Bakheet, T., Williams, B. R., and Khabar, K. S. (2006) ARED 3.0: the large and diverse AU-rich transcriptome. Nucleic Acids Res 34, D111-D114.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bakheet, T.1
Williams, B.R.2
Khabar, K.S.3
-
4
-
-
27544482358
-
Protein synthesis in eukaryotes: The growing biological relevance of cap-independent translation initiation
-
Lopez-Lastra, M., Rivas, A., and Barria, M. I. (2005) Protein synthesis in eukaryotes: the growing biological relevance of cap-independent translation initiation. Biol Res 38, 121-146.
-
(2005)
Biol Res
, vol.38
, pp. 121-146
-
-
Lopez-Lastra, M.1
Rivas, A.2
Barria, M.I.3
-
5
-
-
33644874187
-
IRESite: The database of experimentally verified IRES structures (www.iresite.org)
-
Mokrejs, M., Vopalensky, V., Kolenaty, O., Masek, T., Feketova, Z., Sekyrova, P., Skaloudova, B., Kriz, V., and Pospisek, M. (2006) IRESite: the database of experimentally verified IRES structures (www.iresite.org). Nucleic Acids Res 34, D125-D130.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Mokrejs, M.1
Vopalensky, V.2
Kolenaty, O.3
Masek, T.4
Feketova, Z.5
Sekyrova, P.6
Skaloudova, B.7
Kriz, V.8
Pospisek, M.9
-
6
-
-
0037249634
-
IRESdb: The Internal Ribosome Entry Site database
-
Bonnal, S., Boutonnet, C., Prado-Lourenco, L., and Vagner, S. (2003) IRESdb: the Internal Ribosome Entry Site database. Nucleic Acids Res 31, 427-428.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 427-428
-
-
Bonnal, S.1
Boutonnet, C.2
Prado-Lourenco, L.3
Vagner, S.4
-
7
-
-
27644485122
-
Eukaryotic mRNA 3' processing: A common means to different ends
-
Gilmartin, G. M. (2005) Eukaryotic mRNA 3' processing: a common means to different ends. Genes Dev 19, 2517-2521.
-
(2005)
Genes Dev
, vol.19
, pp. 2517-2521
-
-
Gilmartin, G.M.1
-
8
-
-
12344290346
-
Mechanisms of translational control by the 3' UTR in development and differentiation
-
de Moor, C. H., Meijer, H., and Lissenden, S. (2005) Mechanisms of translational control by the 3' UTR in development and differentiation. Semin Cell Dev Biol 16, 49-58.
-
(2005)
Semin Cell Dev Biol
, vol.16
, pp. 49-58
-
-
De Moor, C.H.1
Meijer, H.2
Lissenden, S.3
-
9
-
-
13444302775
-
PolyA-DB: A database for mammalian mRNA polyadenylation
-
Zhang, H., Hu, J., Recce, M., and Tian, B. (2005) PolyA-DB: a database for mammalian mRNA polyadenylation. Nucleic Acids Res 33, D116-D120.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Zhang, H.1
Hu, J.2
Recce, M.3
Tian, B.4
-
10
-
-
13444252847
-
Rfam: Annotating non-coding RNAs in complete genomes
-
Griffiths-Jones, S., Moxon, S., Marshall, M., Khanna, A., Eddy, S. R., and Bateman, A. (2005) Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res 33, D121-D124.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
11
-
-
33644873202
-
Transterm-extended search facilities and improved integration with other databases
-
Jacobs, G. H., Stockwell, P. A., Tate, W. P., and Brown, C. M. (2006) Transterm-extended search facilities and improved integration with other databases. Nucleic Acids Res 34, D37-D40.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Jacobs, G.H.1
Stockwell, P.A.2
Tate, W.P.3
Brown, C.M.4
-
12
-
-
13444301473
-
UTRdb and UTRsite: A collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
-
Mignone, F., Grillo, G., Licciulli, F., Iacono, M., Liuni, S., Kersey, P. J., Duarte, J., Saccone, C., and Pesole, G. (2005) UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res 33, D141-D146.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mignone, F.1
Grillo, G.2
Licciulli, F.3
Iacono, M.4
Liuni, S.5
Kersey, P.J.6
Duarte, J.7
Saccone, C.8
Pesole, G.9
-
13
-
-
0033198381
-
Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs
-
Pesole, G., and Liuni, S. (1999) Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs. Trends Genet 15, 378.
-
(1999)
Trends Genet
, vol.15
, pp. 378
-
-
Pesole, G.1
Liuni, S.2
-
14
-
-
0041620253
-
PatSearch: A program for the detection of patterns and structural motifs in nucleotide sequences
-
Grillo, G., Licciulli, F., Liuni, S., Sbisa, E., and Pesole, G. (2003) PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res 31, 3608-3612.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3608-3612
-
-
Grillo, G.1
Licciulli, F.2
Liuni, S.3
Sbisa, E.4
Pesole, G.5
-
15
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
Bailey, T. L., Williams, N., Misleh, C., and Li, W. W. (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34, W369-W373.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
16
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T. L., and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2, 28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
17
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey, T. L., and Gribskov, M. (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14, 48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
18
-
-
33747860882
-
QGRS Mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences
-
Kikin, O., D'Antonio, L., and Bagga, P. S. (2006) QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res 34, W676-W682.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Kikin, O.1
D'Antonio, L.2
Bagga, P.S.3
-
19
-
-
0031030491
-
A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates
-
Bashkirov, V. I., Scherthan, H., Solinger, J. A., Buerstedde, J. M., and Heyer, W. D. (1997) A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates. J Cell Biol 136, 761-773.
-
(1997)
J Cell Biol
, vol.136
, pp. 761-773
-
-
Bashkirov, V.I.1
Scherthan, H.2
Solinger, J.A.3
Buerstedde, J.M.4
Heyer, W.D.5
-
20
-
-
0035900649
-
Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
-
Darnell, J. C., Jensen, K. B., Jin, P., Brown, V., Warren, S. T., and Darnell, R. B. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell 107, 489-499.
-
(2001)
Cell
, vol.107
, pp. 489-499
-
-
Darnell, J.C.1
Jensen, K.B.2
Jin, P.3
Brown, V.4
Warren, S.T.5
Darnell, R.B.6
-
21
-
-
0141925805
-
A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons
-
Bonnal, S., Schaeffer, C., Creancier, L., Clamens, S., Moine, H., Prats, A. C., and Vagner, S. (2003) A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons. J Biol Chem 278, 39330-39336.
-
(2003)
J Biol Chem
, vol.278
, pp. 39330-39336
-
-
Bonnal, S.1
Schaeffer, C.2
Creancier, L.3
Clamens, S.4
Moine, H.5
Prats, A.C.6
Vagner, S.7
-
22
-
-
0034682883
-
Preferential binding of fd gene 5 protein to tetraplex nucleic acid structures
-
Oliver, A. W., Bogdarina, I., Schroeder, E., Taylor, I. A., and Kneale, G. G. (2000) Preferential binding of fd gene 5 protein to tetraplex nucleic acid structures. J Mol Biol 301, 575-584.
-
(2000)
J Mol Biol
, vol.301
, pp. 575-584
-
-
Oliver, A.W.1
Bogdarina, I.2
Schroeder, E.3
Taylor, I.A.4
Kneale, G.G.5
-
23
-
-
33747821745
-
RegRNA: An integrated web server for identifying regulatory RNA motifs and elements
-
Huang, H. Y., Chien, C. H., Jen, K. H., and Huang, H. D. (2006) RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. Nucleic Acids Res 34, W429-W434.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Huang, H.Y.1
Chien, C.H.2
Jen, K.H.3
Huang, H.D.4
-
24
-
-
0035890840
-
RNAMotif, an RNA secondary structure definition and search algorithm
-
Macke, T. J., Ecker, D. J., Gutell, R. R., Gautheret, D., Case, D. A., and Sampath, R. (2001) RNAMotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res 29, 4724-4735.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4724-4735
-
-
Macke, T.J.1
Ecker, D.J.2
Gutell, R.R.3
Gautheret, D.4
Case, D.A.5
Sampath, R.6
-
25
-
-
23144439384
-
PatMatch: A program for finding patterns in peptide and nucleotide sequences
-
Yan, T., Yoo, D., Berardini, T. Z., Mueller, L. A., Weems, D. C., Weng, S., Cherry, J. M., and Rhee, S. Y. (2005) PatMatch: a program for finding patterns in peptide and nucleotide sequences. Nucleic Acids Res 33, W262-W266.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Yan, T.1
Yoo, D.2
Berardini, T.Z.3
Mueller, L.A.4
Weems, D.C.5
Weng, S.6
Cherry, J.M.7
Rhee, S.Y.8
-
26
-
-
26444437841
-
Detecting seeded motifs in DNA sequences
-
Pizzi, C., Bortoluzzi, S., Bisognin, A., Coppe, A., and Danieli, G. A. (2005) Detecting seeded motifs in DNA sequences. Nucleic Acids Res 33, e135.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pizzi, C.1
Bortoluzzi, S.2
Bisognin, A.3
Coppe, A.4
Danieli, G.A.5
-
27
-
-
33747857387
-
RNAMST: Efficient and flexible approach for identifying RNA structural homologs
-
Chang, T. H., Huang, H. D., Chuang, T. N., Shien, D. M., and Horng, J. T. (2006) RNAMST: efficient and flexible approach for identifying RNA structural homologs. Nucleic Acids Res 34, W423-W428.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Chang, T.H.1
Huang, H.D.2
Chuang, T.N.3
Shien, D.M.4
Horng, J.T.5
|