Haplotypes of nine single nucleotide polymorphisms on chromosome 19q13.2-3 associated with susceptibility of lung cancer in a Chinese population

Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Volumn 641, Issue 1-2, 2008, Pages 12-18

  Yin, Jiaoyang ^a   Vogel, Ulla ^b,c   Ma, Yegang ^d   Qi, Rong ^a   Wang, Huiwen ^a  

^a SHENYANG MEDICAL COLLEGE   (China)

^b NATIONAL RESEARCH CENTRE FOR THE WORKING ENVIRONMENT   (Denmark)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d LIAONING CANCER HOSPITAL AND INSTITUTE   (China)

Author keywords

Chinese population; Chromosome 19q13.2 3; DNA repair gene; Haplotype; Lung cancer; Single nucleotide polymorphism

Indexed keywords

ADULT; AGE; ARTICLE; CANCER RISK; CANCER SUSCEPTIBILITY; CHINESE; CHROMOSOME 19Q; CONTROLLED STUDY; DNA REPAIR; ETHNICITY; FEMALE; GENDER; GENE; GENE LINKAGE DISEQUILIBRIUM; HAPLOTYPE; HUMAN; LUNG CANCER; MAJOR CLINICAL STUDY; MALE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL SIGNIFICANCE;

ADULT; CASE-CONTROL STUDIES; CHINA; CHROMOSOMES, HUMAN, PAIR 19; DNA-BINDING PROTEINS; ENDONUCLEASES; FEMALE; GENETIC PREDISPOSITION TO DISEASE; HAPLOTYPES; HUMANS; LUNG NEOPLASMS; MALE; MIDDLE AGED; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; XERODERMA PIGMENTOSUM GROUP D PROTEIN;

EID: 42649088736     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mrfmmm.2008.02.004     Document Type: Article

References (31)

1. Vogel U., Sorensen M., Hansen R.D., Tjonneland A., Overvad K., Wallin H., Nexo B.A., and Raaschou-Nielsen O. Gene-environment interactions between smoking and a haplotype of RAI, ASE-1 and ERCC1 polymorphisms among women in relation to risk of lung cancer in a population-based study. Cancer Lett. 247 (2007) 159-165
2. Naccarati A., Pardini B., Hemmink K., and Vodicka P. Sporadic colorectal cancer and individual susceptibility: a review of the association studies investigating the role of DNA repair genetic polymorphisms. Mutat. Res. 635 (2007) 118-145
3. Lunn R.M., Helzlsouer K.J., Parshad R., Umbach D.M., Harris E.L., Sanford K.K., and Bell D.A. XPD polymorphisms: effects on DNA repair proficiency. Carcinogenesis 21 (2000) 551-555
4. Vodicka P., Stetina R., Polakova V., Tulupova E., Naccarati A., Vodickova L., Kumar R., Hanova M., Pardini B., Slyskova J., Musak L., Palma G.D., Soucek P., and Hemminki K. Association of DNA repair polymorphisms with DNA repair functional outcomes in healthy human subjects. Carcinogenesis 28 (2007) 657-664
5. Hemminki K., Bermejo J.L., and Forsti A. The balance between heritable and environmental aetiology of human disease. Nat. Rev. Genet. 7 (2006) 958-965
6. Goode E.L., Ulrich C.M., and Potter J.D. Polymorphisms in DNA repair gene and associations with cancer risk. Cancer Epidemiol. Biomarkers. Prev. 11 (2002) 1513-1530
7. Barnes D.E., Kodama K., Tynan K., Trask B.J., Christensen M., De Jong P.J., Spurt N.K., Lindahl T., and Mohrenweiser H.W. Assignment of the gene encoding DNA ligase 1 to human chromosome 19q.13.2-13.3. Genomics 12 (1992) 164-166
8. Mohrenweiser H.W., Carrano A.V., Fertitta A., Perry B., Thompson L.H., Tucker J.D., and Weber C.A. Refined mapping of the three DNA repair genes. ERCC1, ERCC2, and XRCC1 on human chromosome 19. Cytogenet. Cell Genet. 52 (1989) 11-14
9. Johnson G.C., Esposito L., Barratt B.J., Smith A.N., Heward J., Di Genova G., Ueda H., Cordell H.J., Eaves I.A., Dudbridge F., Twells R.C., Payne F., Hughes W., Nutland S., Stevens H., Carr P., Tuomilehto-Wolf E., Tuomilehto J., Gough S.C., Clayton D., and Todd J.A. Haplotype tagging for the identification of common disease genes. Nat. Genet. 29 (2001) 233-237
10. Skjelbred C.F., Sæbø M., Nexø A.B., Wallin H., Hansteen I.-L., Vogel U., and Kure E.H. Effects of polymorphisms in ERCC1, ASE-1 and RAI on the risk of colorectal carcinomas and adenomas: a case control study. BMC Cancer 6 (2006) 175
11. Yin J., Li J., Ma Y., Guo L., Wang H., and Vogel U. The DNA repair gene ERCC2/XPD polymorphism Arg156Arg (A22541C) and risk of lung cancer in a Chinese population. Cancer Lett. 223 2 (2005) 219-226
12. Yin J., Vogel U., Guo L., Ma Y., and Wang H. Lack of association between DNA repair gene ERCC1 polymorphism and risk of lung cancer in a Chinese population. Cancer Genet. Cytogenet. 164 1 (2006) 66-70
13. Yin J., Vogel U., Guo L., Ma Y., Wang H., and Qi R. The DNA repair gene ERCC2 polymorphism Lys751Gln and risk of lung cancer in a Northeastern Chinese population. Cancer Genet. Cytogenet. 169 1 (2006) 27-32
14. Yin J., Vogel U., Ma Y., Qi R., Sun Z., and Wang H. A haplotype encompassing the variant allele of DNA repair gene polymorphism ERCC2/XPD Lys751Gln but not the variant allele of Asp312Asn is associated with risk of lung cancer in a northeastern Chinese population. Cancer Genet. Cytogenet. 175 (2007) 47-51
15. Yin J., Vogel U., Ma Y., Qi R., Sun Z., and Wang H. The DNA repair gene XRCC1 and genetic susceptibility of lung cancer in a northeastern Chinese population. Lung Cancer 56 (2007) 153-160
16. Dybdahl M., Vogel U., Frentz G., Wallin H., and Nexo B.A. Polymorphisms in the DNA repair gene XPD: correlations with risk and at onset of basal cell carcinoma. Cancer Epidemiol. Biomarkers Prev. 8 (1999) 77-81
17. Vogel U., Hedayati M., Dybdahl M., Grossman L., and Nexo B.A. Polymorphisms of the DNA repair gene XPD: correlation with risk of basal cell carcinoma revisited. Carcinogenesis 22 (2001) 899-904
18. Shi Y.Y., and He L. SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci. Cell Res. 15 (2005) 97-98
19. Barrett J.C., Fry B., Maller J., and Daly M.J. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21 (2005) 263-265
20. Ke X., and Cardon L.R. Efficient selective screening of haplotype tag SNPs. Bioinformatics 19 (2003) 287-288
21. Matullo G., Dunning A.M., Guarrera S., Baynes C., Polidoro S., Garte S., Autrup H., Malaveille C., Peluso M., Airoldi L., Veglia F., Gormally E., Hoek G., Krzyzanowski M., Overvad K., Raaschou-Nielsen O., Clavel-Chapelon F., Linseisen J., Boeing H., Trichopoulou A., Palli D., Krogh V., Tumino R., Panico S., Bueno-De-Mesquita H.B., Peeters P.H., Lund E., Pera G., Martinez C., Dorronsoro M., Barricarte A., Tormo M.J., Quiros J.R., Day N.E., Key T.J., Saracci R., Kaaks R., Riboli E., and Vineis P. DNA repair polymorphisms and cancer risk in non-smokers in a cohort study. Carcinogenesis 27 (2006) 997-1007
22. Hu Z., Xu L., Shao M., Yuan J., Wang Y., Wang F., Yuan W., Qian J., Ma H., Wang Y., Liu H., Chen W., Yang L., Jing G., Huo X., Chen F., Jin L., Wei Q., Wu T., Lu D., Huang W., and Shen H. Polymorphisms in the two helicases ERCC2/XPD and ERCC3/XPB of the transcription factor IIH Complex and risk of lung cancer: a case-control analysis in a Chinese Population. Cancer Epidemiol. Biomarkers Prev. 15 (2006) 1336-1340
23. Yin J., Rockenbauer E., Hedayati M., Jacobsen N.R., Vogel U., Grossman L., Bolund L., and Nexo B.A. Multiple single nucleotide polymorphisms on human chromosome 19q13.2-3 associate with risk of basal cell carcinoma. Cancer Epidemiol. Biomarkers Prev. 11 (2002) 1449-1453
24. Rockenbauer E., Bendixen M.H., Bukowy Z., Yin J., Jacobsen N.R., Hedayati M., Vogel U., Grossman L., Bolund L., and Nexo B.A. Association of chromosome 19q13.2-3 haplotypes with basal cell carcinoma: tentative delineation of an involved region using data for single nucleotide polymorphisms in two cohorts. Carcinogenesis 23 (2002) 1149-1153
25. Vogel U., Olsen A., Wallin H., Overvad K., Tjønneland A., and Nexø B.A. Effect of polymorphisms in chromosome 19q13.2-3 on the risk of basal cell carcinoma among Caucasians after age 50. Cancer Detect. Prev. 29 (2005) 209-214
26. Yin J., Vogel U., Gerdes L.U., Dybdahl M., Bolund L., and Nexo B.A. Twelve single nucleotide polymorphisms on chromosome 19q13.2-3: linkage disequilibria and associations with basal cell carcinoma in Danish psoriatic patients. Biochem. Genet. 41 (2003) 27-37
27. Nexo B.A., Vogel U., Olsen A., Ketelsen T., Bukowy Z., Thomsen B.L., Wallin H., Overvad K., and Tjonneland A. A specific haplotype of single nucleotide polymorphisms on chromosome 19q13.2-3 encompassing the gene RAI is indicative of post-menopausal breast cancer before age 55. Carcinogenesis 24 (2003) 899-904
28. Vogel U., Laros I., Jacobsen N.R., Thomsen B.L., Bak H., Olsen A., Bukowy Z., Wallin H., Overvad K., Tjonneland A., Nexo B.A., and Raaschou-Nielsen O. Two regions in chromosome 19q13.2-3 are associated with risk of lung cancer. Mutat. Res. 546 (2004) 65-74
29. Raaschou-Nielsen O., Sørensen M., Overvad K., Tjønneland A., and Vogel U. Polymorphisms in nucleotide excision repair genes, smoking and intake of fruit and vegetables in relation to lung cancer. Lung Cancer 59 (2008) 171-179
30. Whitehead C.M., Winkfein R.J., Fritzler M.J., and Rattner J.B. ASE-1: a novel protein of the fibrillar centres of the nucleolus and nucleolus organizer region of mitotic chromosomes. Chromosoma 106 (1997) 493-502
31. Yang J.P., Hori M., Sanda T., and Okamoto T. Identification of a novel inhibitor of nuclear factor-kappaB, RelA-associated inhibitor. J. Biol. Chem. 274 (1999) 15662-15670