-
1
-
-
0025183708
-
Basic local alignment search tool
-
PMID:2231712
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410. PMID:2231712.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
PMID:10802651, doi:10.1038/75556
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., et al.. 2000. Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25: 25-29. doi:10.1038/75556. PMID:10802651.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
3
-
-
3042672020
-
Functional annotation of the Arabidopsis genome using controlled vocabularies
-
doi:10.1104/pp.104.040071
-
Berardini, T.Z., Mundodi, S., Reiser, L., Huala, E., Garcia-Hernandez, M., Zhang, P., et al. 2004. Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135: 745-755. doi:10.1104/pp.104.040071.
-
(2004)
Plant Physiol
, vol.135
, pp. 745-755
-
-
Berardini, T.Z.1
Mundodi, S.2
Reiser, L.3
Huala, E.4
Garcia-Hernandez, M.5
Zhang, P.6
-
4
-
-
0036137277
-
DNA sequence quality trimming and vector removal
-
PMID:11751217, doi:10.1093/ bioinformatics/17.12.1093
-
Chou, H.-H., and Holmes, M.H. 2001. DNA sequence quality trimming and vector removal. Bioinformatics, 17: 1093-1104. doi:10.1093/ bioinformatics/17.12.1093. PMID:11751217.
-
(2001)
Bioinformatics
, vol.17
, pp. 1093-1104
-
-
Chou, H.-H.1
Holmes, M.H.2
-
5
-
-
0031955518
-
Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
-
PMID:9521921
-
Ewing, B., Hillier, L., Wendl, M., and Green, P. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8: 175-185. PMID:9521921.
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.3
Green, P.4
-
6
-
-
1542475839
-
Arabidopsis transcript profiling on Affymetrix GeneChip arrays
-
doi:10.1023/B:PLAN.0000019069.23317.97. PMID:15010612
-
Hennig, L., Menges, M., Murray, J.A.H., and Gruissem, W. 2003. Arabidopsis transcript profiling on Affymetrix GeneChip arrays. Plant Mol. Biol. 53: 457-465. doi:10.1023/B:PLAN.0000019069.23317.97. PMID:15010612.
-
(2003)
Plant Mol. Biol
, vol.53
, pp. 457-465
-
-
Hennig, L.1
Menges, M.2
Murray, J.A.H.3
Gruissem, W.4
-
7
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
PMID:10508846, doi:10.1101/gr.9.9.868
-
Huang, X., and Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877. doi:10.1101/gr.9.9.868. PMID:10508846.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
8
-
-
33644825186
-
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis
-
PMID:16284311, doi:10.1105/tpc.105.035840
-
Jiao, Y., Ma, L., Strickland, E., and Deng, X.W. 2005. Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell, 17: 3239-3256. doi:10.1105/tpc.105.035840. PMID:16284311.
-
(2005)
Plant Cell
, vol.17
, pp. 3239-3256
-
-
Jiao, Y.1
Ma, L.2
Strickland, E.3
Deng, X.W.4
-
9
-
-
34250640609
-
Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus
-
PMID:17384168, doi:10.1104/pp.106.092932
-
Malik, M.R., Wang, F., Dirpaul, J.M., Zhou, N., Polowick, P.L., Ferrie, A.M.R., and Krochko, J.E. 2007. Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus. Plant Physiol. 144: 134-154. doi:10.1104/pp.106.092932. PMID:17384168.
-
(2007)
Plant Physiol
, vol.144
, pp. 134-154
-
-
Malik, M.R.1
Wang, F.2
Dirpaul, J.M.3
Zhou, N.4
Polowick, P.L.5
Ferrie, A.M.R.6
Krochko, J.E.7
-
10
-
-
0346494835
-
-
Ouyang, S., and Buell, C.R. 2004. The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res. 32(Database issue): D360-D363. doi:10.1093/nar/gkh099. PMID:14681434.
-
Ouyang, S., and Buell, C.R. 2004. The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res. 32(Database issue): D360-D363. doi:10.1093/nar/gkh099. PMID:14681434.
-
-
-
-
11
-
-
0037460985
-
TIGR Gene Indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
-
PMID:12651724, doi:10.1093/bioinformatics/btg034
-
Pertea, G., Huang, X., Liang, F., Antonescu, V., Sultana, R., Karamycheva, S., et al. 2003. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics, 19: 651-652. doi:10.1093/bioinformatics/btg034. PMID:12651724.
-
(2003)
Bioinformatics
, vol.19
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
Karamycheva, S.6
-
12
-
-
24744458340
-
Comparison of transcript profiling on Arabidopsis microarray platform technologies
-
PMID:16158238, doi:10.1007/s11103-005-6506-3
-
Pylatuik, J.D., and Fobert, P.R. 2005. Comparison of transcript profiling on Arabidopsis microarray platform technologies. Plant Mol. Biol. 58: 609-624. doi:10.1007/s11103-005-6506-3. PMID:16158238.
-
(2005)
Plant Mol. Biol
, vol.58
, pp. 609-624
-
-
Pylatuik, J.D.1
Fobert, P.R.2
-
13
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Edited by S. Krawetz and S. Misener. Humana Press, Totowa, N.J. pp
-
Rozen, S., and Skaletsky, H. 2000. Primer3 on the WWW for general users and for biologist programmers. In Bioinformatics methods and protocols: methods in molecular biology. Edited by S. Krawetz and S. Misener. Humana Press, Totowa, N.J. pp. 365-386.
-
(2000)
Bioinformatics methods and protocols: Methods in molecular biology
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
14
-
-
0037099005
-
BioArray Software Environment (BASE): A platform for comprehensive management and analysis of microarray data
-
software0003.1-0003.6. doi:10.1186/gb-2002-3-8-software0003
-
Saal, L.H., Troein, C., Vallon-Christersson, J., Gruvberger, S., Borg, Å, and Peterson, C. 2002. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol. 3(8): software0003.1-0003.6. doi:10.1186/gb-2002-3-8-software0003.
-
(2002)
Genome Biol
, vol.3
, Issue.8
-
-
Saal, L.H.1
Troein, C.2
Vallon-Christersson, J.3
Gruvberger, S.4
Borg, A.5
Peterson, C.6
-
15
-
-
42449126269
-
-
Smit, A.F.A, Hubley, R, and Green, P. 2004. RepeatMasker Open-3.0 [computer program, Available from
-
Smit, A.F.A., Hubley, R., and Green, P. 2004. RepeatMasker Open-3.0 [computer program]. Available from http://www.repeatmasker.org.
-
-
-
-
16
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
doi:10.1073/pnas.091062498
-
Tusher, V.G., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. U.S.A. 98: 5116-5121. doi:10.1073/pnas.091062498.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
17
-
-
51249168798
-
Extraction of RNA from tissues containing high levels of procyanidins that bind RNA
-
doi:10.1007/BF02668374
-
Wang, C.-S., and Vodkin, L.O. 1994. Extraction of RNA from tissues containing high levels of procyanidins that bind RNA. Plant Mol. Biol. Rep. 12: 132-145. doi:10.1007/BF02668374.
-
(1994)
Plant Mol. Biol. Rep
, vol.12
, pp. 132-145
-
-
Wang, C.-S.1
Vodkin, L.O.2
-
18
-
-
2442497313
-
Genome-wide analysis of spatial gene expression in Arabidopsis flowers
-
PMID:15100403, doi:10.1105/tpc.021741
-
Wellmer, F., Riechmann, J.-L., Alves-Ferreira, M., and Meyerowitz, E.M. 2004. Genome-wide analysis of spatial gene expression in Arabidopsis flowers. Plant Cell, 16: 1314-1326. doi:10.1105/tpc.021741. PMID:15100403.
-
(2004)
Plant Cell
, vol.16
, pp. 1314-1326
-
-
Wellmer, F.1
Riechmann, J.-L.2
Alves-Ferreira, M.3
Meyerowitz, E.M.4
-
19
-
-
33845498838
-
cDNA microarray analysis of gene expression in Brassica napus treated with oligochitosan elicitor
-
PMID:17092736, doi:10.1016/j.plaphy.2006. 10.002
-
Yin, H., Li, S., Zhao, X., Du, Y., and Ma, X. 2006. cDNA microarray analysis of gene expression in Brassica napus treated with oligochitosan elicitor. Plant Physiol. Biochem. 44: 910-916. doi:10.1016/j.plaphy.2006. 10.002. PMID:17092736.
-
(2006)
Plant Physiol. Biochem
, vol.44
, pp. 910-916
-
-
Yin, H.1
Li, S.2
Zhao, X.3
Du, Y.4
Ma, X.5
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