Asymmetrical DNA replication promotes evolution: Disparity theory of evolution

Genetica

Volumn 102-103, Issue , 1998, Pages 333-347

  Furusawa, Mitsuru ^a   Doi, Hirofumi ^b  

^a DAIICHI SANKYO CO   (Japan)

^b FUJITSU LABORATORIES LTD   (Japan)

Author keywords

Acceleration of evolution; Asymmetrical mutagenesis; Double stranded DNA; Genetic algorithm; Replication

Indexed keywords

DNA REPLICATION; EVOLUTION;

EID: 4243334124     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/a:1017078924245     Document Type: Article

References (27)

1. Arnold, F.H., 1993. Engineering proteins for nonnatural environments FASEB. J. 7: 744-749.
2. Bulmer, M., 1991. Strandsymmetry of mutation rates in the β-globin region. J. Mol. Evol. 33: 305-310.
3. Doi, H., K. Wada & M. Furusawa, 1994. Asymmetrical mutation due to semiconservative DNA replication and double-stranded DNA type genetic algorithm, pp. 359-364 in Artificial Life IV, edited by R.D. Brooks & P. Maes. MIT Press.
4. Dover, G., 1982. Molecular drive: acohesive mode of species evolution. Nature 299: 111-117.
5. Drake, J., 1991. A constant rate of spontaneous mutation in DNA-basedmicrobes. Proc. Natl. Acad. Sci., USA. 88, 7160-7164.
6. Eigen, M., 1987. New concepts for dealing with the evolution of nucleic acids. Cold Spring Harbor Symposium on Quantitative Biology. LII: 307-320.
7. Eigen, M., W. Gerdiner, P. Schuster & R. Winlder-Oswatisch, 1981. The origin of genetic information. Scientific American 244, 78-94.
8. Francino, M.P., L. Chao, M.A. Rileyet & H. Ochman, 1996. Asymmetries generated by transcription-coup led repair in enterobacterial genes. Science 272: 107-109.
9. Furusawa, M. & H. Doi, 1992. Promotion of evolution: disparity in the frequency of strand-specific misreading between the lagging and leading DNA strands enhances disproportionate accumulation of mutations. J. Theor. Biol. 157: 127-133.
10. Goldberg, D.E., 1989 Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley, Reading, MA.
11. Horiuchi, T., H. Maki & M. Seldguchi, 1978. A new conditional lethal mutator (dnaQ49) in Escherichia coli. Molec. Gen. Genet. 163: 277-283.
12. Iwaki, T., A. Kawamura, Y. Ishino, K. Kohno, Y. Kano, N. Goshima, M. Yara, M. Furusawa, H. Doi & F. Imamoto, 1996. Preferential replication-dependent mutagenesis in the lagging DNA strand in Escherichia coli. Mol. Gen. Genet. 251: 657-664.
13. Kramer, F.R., D.R. Mills, P.E. Cole, T. Nishihara & S. Spiegelman, 1974. Evolution in vitro: Sequence and phenotype of a mutant RNA resistant to ethidium bromide. J. Mol. Biol.89: 719-736.
14. Kunkel, T.A., 1985. The mutational specificity of DNA polym erase-α and -γ during in vitro DNA synthesis. J. Biol. Chem. 260: 12866-12874.
15. Kunkel, T.A., R.D. Sabatino & R.A. Bambara, 1987. Exonucleolytic proofreading by calf thymus DNA polymerase δ. Proc. Natl. Acad. Sci., USA. 84: 4865-4869.
16. Ohno, S., 1982. Evolution by Gene Duplication. Springer-Verlag (Heiderberg-Berlin-New York).
17. Roberts, J.D., S. Izuta, D.C. Thomas & T.A. Kunkel, 1994. Mispair-, site-, and strand-specific error rates during Simian virus 40 origin-dependent replication invitro with excess deoxythymidine triphosphate. J. Biol. Chem. 269: 1711-1717.
18. Roberts, J.D. & T.A. Kunkel, 1988. Fidelity of human cell DNA replication complex. Proc Natl. Acad. Sci., USA. 85: 7064-7080.
19. Roberts, J.D., D. Nguyen & T.A. Kunkel, 1993. Frameshift fidelity during replication of double-stranded DNA in Hela cell extracts. Biochemistry 32: 4083-4089.
20. Roberts, J.D., D.C. Thomas & T.A. Kunkel, 1991. Exonucleolytic proofreading of leading and lagging strand DNA replication errors. Proc. Natl. Acad. Sci., USA. 88: 3465-3469.
21. Roche, W.A., T.Q. Trinh & R.R. Sinden, 1995. Differential DNA secondary structure-mediated deletion mutation in the leading and lagging strands. J. Bacteriol. 177: 4385-4391.
22. Thomas, D.C., J.D. Roberts, M.P. Fitzgerald & T.A. Kunkel, 1990. Fidelity of animal cell DNA polym erases α and α and of a hum an replication complex. Basic Life Science 52: 289-297.
23. Trinh, T.Q. & R. Sinden, 1991. Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli. Nature 352: 544-547.
24. Veaute X. & R.P.P Fuchs, 1993. Greater susceptibility to mutations in lagging strand of DNA replication of Escherichia coli than in leading strand. Science 261: 598-600.
25. Wada, K., H. Doi, S. Tanaka, Y. Wada & M. Furusawa, 1993. A neo-Darwinian algorithm: asymmetrical mutations due to semiconservative DNA-type replicationpromote evolution. Proc. Natl. Acad. Sci., USA. 90: 11934-11938.
26. Wright S., 1970. Mathematical Topics in Population Genetics, pp. 1-31 in Mathematical Topics in Population Genetics, edited by. K. Kojima, Springer-Verlag (Berlin).
27. Wu, Chung-I & N. Maeda, 1987. Inequality in mutation rates of the two strands of DNA. Nature 327: 169-170.