-
1
-
-
0035878120
-
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
-
Bartee L, Malagnac F, Bender J (2001) Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev 15:1753-1758
-
(2001)
Genes Dev
, vol.15
, pp. 1753-1758
-
-
Bartee, L.1
Malagnac, F.2
Bender, J.3
-
2
-
-
0037058968
-
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
-
Cao X, Jacobsen SE (2002) Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci USA 99:16491-16498
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16491-16498
-
-
Cao, X.1
Jacobsen, S.E.2
-
3
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan SWL, Henderson IR, Jacobsen SE (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6:351-360
-
(2005)
Nat Rev Genet
, vol.6
, pp. 351-360
-
-
Chan, S.W.L.1
Henderson, I.R.2
Jacobsen, S.E.3
-
4
-
-
0030799238
-
Epigenetic silencing of RNA polymerase I transcription: A role for DNA methylation and histone modification in nucleolar dominance
-
Chen ZJ, Pikaard CS (1997) Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. Genes Dev 11:2124-2136
-
(1997)
Genes Dev
, vol.11
, pp. 2124-2136
-
-
Chen, Z.J.1
Pikaard, C.S.2
-
5
-
-
0035890090
-
Lsh, a member of the SNF2 family, is required for genome-wide methylation
-
Dennis K, Fan T, Geiman T, Yan Q, Muegge K (2001) Lsh, a member of the SNF2 family, is required for genome-wide methylation. Genes Dev 15:2940-2944
-
(2001)
Genes Dev
, vol.15
, pp. 2940-2944
-
-
Dennis, K.1
Fan, T.2
Geiman, T.3
Yan, Q.4
Muegge, K.5
-
6
-
-
0029738387
-
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
-
Finnegan EJ, Peacock WJ, Dennis ES (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 93:8449-8454
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 8449-8454
-
-
Finnegan, E.J.1
Peacock, W.J.2
Dennis, E.S.3
-
7
-
-
0027752292
-
Abnormal chromosome behavior in Neurospora mutants defective in DNA methylation
-
Foss HM, Roberts CJ, Claeys KM, Selker EU (1993) Abnormal chromosome behavior in Neurospora mutants defective in DNA methylation. Science 262:1737-1741
-
(1993)
Science
, vol.262
, pp. 1737-1741
-
-
Foss, H.M.1
Roberts, C.J.2
Claeys, K.M.3
Selker, E.U.4
-
8
-
-
1242271994
-
HP1 is essential for DNA methylation in Neurospora
-
Freitag M, Hickey PC, Khlafallah TK, Read ND, Selker EU (2004) HP1 is essential for DNA methylation in Neurospora. Mol Cell 13:427-434
-
(2004)
Mol Cell
, vol.13
, pp. 427-434
-
-
Freitag, M.1
Hickey, P.C.2
Khlafallah, T.K.3
Read, N.D.4
Selker, E.U.5
-
9
-
-
33745399102
-
Comparison of the genome structure of the self-incompatibility (S) locus in interspecific pairs of S haplotypes
-
Fujimoto R, Okazaki K, Fukai E, Kusaba M, Nishio T (2006a) Comparison of the genome structure of the self-incompatibility (S) locus in interspecific pairs of S haplotypes. Genetics 173:1157-1167
-
(2006)
Genetics
, vol.173
, pp. 1157-1167
-
-
Fujimoto, R.1
Okazaki, K.2
Fukai, E.3
Kusaba, M.4
Nishio, T.5
-
10
-
-
33749661190
-
Characterization of DNA methyltransferase genes in Brassica rapa
-
Fujimoto R, Sasaki T, Nishio T (2006b) Characterization of DNA methyltransferase genes in Brassica rapa. Genes Genet Syst 81:235-242
-
(2006)
Genes Genet Syst
, vol.81
, pp. 235-242
-
-
Fujimoto, R.1
Sasaki, T.2
Nishio, T.3
-
11
-
-
42049122834
-
The pattern of amplification and differentiation of Ty1-copia and Ty3-gypsy retrotransposons in Brassicaceae species
-
(in press)
-
Fujimoto R, Takuno S, Sasaki T, Nishio T (2008) The pattern of amplification and differentiation of Ty1-copia and Ty3-gypsy retrotransposons in Brassicaceae species. Genes Genet Syst (in press)
-
(2008)
Genes Genet Syst
-
-
Fujimoto, R.1
Takuno, S.2
Sasaki, T.3
Nishio, T.4
-
12
-
-
0037072666
-
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
-
Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA (2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 297:1871-1873
-
(2002)
Science
, vol.297
, pp. 1871-1873
-
-
Gendrel, A.V.1
Lippman, Z.2
Yordan, C.3
Colot, V.4
Martienssen, R.A.5
-
13
-
-
0032080772
-
Activation of plant retrotransposons under stress conditions
-
Grandbastien MA (1998) Activation of plant retrotransposons under stress conditions. Trend Plant Sci 3:181-187
-
(1998)
Trend Plant Sci
, vol.3
, pp. 181-187
-
-
Grandbastien, M.A.1
-
14
-
-
0034103860
-
Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
-
Hirochika H, Okamoto H, Kakutani T (2000) Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12:357-368
-
(2000)
Plant Cell
, vol.12
, pp. 357-368
-
-
Hirochika, H.1
Okamoto, H.2
Kakutani, T.3
-
15
-
-
0032907728
-
Maintenance of genomic methylation requires a SWI2/SNF2-like protein
-
Jeddeloh JA, Stokes TL, Richards EJ (1999) Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nat Genet 22:94-97
-
(1999)
Nat Genet
, vol.22
, pp. 94-97
-
-
Jeddeloh, J.A.1
Stokes, T.L.2
Richards, E.J.3
-
16
-
-
18844404205
-
Evolution of genome size in Brassicaceae
-
Johnston JS, Pepper AE, Hall AE, Chen ZJ, Hodnett G, Drabek J, Lopez R, Price HJ (2005) Evolution of genome size in Brassicaceae. Ann Bot 95:229-235
-
(2005)
Ann Bot
, vol.95
, pp. 229-235
-
-
Johnston, J.S.1
Pepper, A.E.2
Hall, A.E.3
Chen, Z.J.4
Hodnett, G.5
Drabek, J.6
Lopez, R.7
Price, H.J.8
-
17
-
-
0026951225
-
Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants
-
Jones JD, Shlumukov L, Carland F, English J, Scofield SR, Bishop GJ, Harrison K (1992) Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants. Transgenic Res 1:285-297
-
(1992)
Transgenic Res
, vol.1
, pp. 285-297
-
-
Jones, J.D.1
Shlumukov, L.2
Carland, F.3
English, J.4
Scofield, S.R.5
Bishop, G.J.6
Harrison, K.7
-
18
-
-
0031436403
-
Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana
-
Kakutani T (1997) Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana. Plant J 12:1447-1451
-
(1997)
Plant J
, vol.12
, pp. 1447-1451
-
-
Kakutani, T.1
-
19
-
-
0028815427
-
Characterization of an Arabidopsis thaliana DNA hypomethylation mutant
-
Kakutani T, Jeddeloh JA, Richards EJ (1995) Characterization of an Arabidopsis thaliana DNA hypomethylation mutant. Nucleic Acids Res 23:130-137
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 130-137
-
-
Kakutani, T.1
Jeddeloh, J.A.2
Richards, E.J.3
-
20
-
-
0029861897
-
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations
-
Kakutani T, Jeddeloh JA, Flowers SK, Munakata K, Richards EJ (1996) Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc Natl Acad Sci USA 93:12406-12411
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 12406-12411
-
-
Kakutani, T.1
Jeddeloh, J.A.2
Flowers, S.K.3
Munakata, K.4
Richards, E.J.5
-
21
-
-
0032939382
-
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana
-
Kakutani T, Munakata K, Richards EJ, Hirochika H (1999) Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana. Genetics 151:831-838
-
(1999)
Genetics
, vol.151
, pp. 831-838
-
-
Kakutani, T.1
Munakata, K.2
Richards, E.J.3
Hirochika, H.4
-
22
-
-
0035422440
-
Dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora
-
Kouzminova E, Selker EU (2001) dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora. EMBO J 20:4309-4323
-
(2001)
EMBO J
, vol.20
, pp. 4309-4323
-
-
Kouzminova, E.1
Selker, E.U.2
-
23
-
-
0035056575
-
Self-incompatibility in the genus Arabidopsis: Characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana
-
Kusaba M, Dwyer K, Hendershot J, Vrebalov J, Nasrallah JB, Nasrallah ME (2001) Self-incompatibility in the genus Arabidopsis: characterization of the S locus in the outcrossing A. lyrata and its autogamous relative A. thaliana. Plant Cell 13:627-643
-
(2001)
Plant Cell
, vol.13
, pp. 627-643
-
-
Kusaba, M.1
Dwyer, K.2
Hendershot, J.3
Vrebalov, J.4
Nasrallah, J.B.5
Nasrallah, M.E.6
-
24
-
-
0026708177
-
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
-
Li E, Bestor TH, Jaenisch R (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69:915-926
-
(1992)
Cell
, vol.69
, pp. 915-926
-
-
Li, E.1
Bestor, T.H.2
Jaenisch, R.3
-
25
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE (2001) Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292:2077-2080
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
Jacobsen, S.E.7
-
26
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature 430:471-476
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
Carrington, J.C.11
Doerge, R.W.12
Colot, V.13
Martienssen, R.14
-
27
-
-
33645832572
-
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
-
Lukens LN, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn T (2006) Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol 140:336-348
-
(2006)
Plant Physiol
, vol.140
, pp. 336-348
-
-
Lukens, L.N.1
Pires, J.C.2
Leon, E.3
Vogelzang, R.4
Oslach, L.5
Osborn, T.6
-
28
-
-
33746513103
-
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
-
Manning K, Tor M, Poole M, Hong Y, Thompson AJ, King GJ, Giovannoni JJ, Seymour GB (2006) A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 38:948-952
-
(2006)
Nat Genet
, vol.38
, pp. 948-952
-
-
Manning, K.1
Tor, M.2
Poole, M.3
Hong, Y.4
Thompson, A.J.5
King, G.J.6
Giovannoni, J.J.7
Seymour, G.B.8
-
29
-
-
0035837378
-
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
-
Miura A, Yonebayashi S, Watanabe K, Toyama T, Shimada H, Kakutani T (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411:212-214
-
(2001)
Nature
, vol.411
, pp. 212-214
-
-
Miura, A.1
Yonebayashi, S.2
Watanabe, K.3
Toyama, T.4
Shimada, H.5
Kakutani, T.6
-
30
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 4321-4325
-
-
Murray, M.G.1
Thompson, W.F.2
-
31
-
-
0037067638
-
Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata
-
Nasrallah ME, Liu P, Nasrallah JB (2002) Generation of self-incompatible Arabidopsis thaliana by transfer of two S locus genes from A. lyrata. Science 297:247-249
-
(2002)
Science
, vol.297
, pp. 247-249
-
-
Nasrallah, M.E.1
Liu, P.2
Nasrallah, J.B.3
-
32
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
Okano M, Bell DW, Haber DA, Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99:247-257
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
33
-
-
0032212130
-
Urea improves efficiency of bisulphate-mediated sequencing of 5′-methylcytosine in genomic DNA
-
Paulin R, Grigg GW, Davey MW, Piper AA (1998) Urea improves efficiency of bisulphate-mediated sequencing of 5′-methylcytosine in genomic DNA. Nucleic Acids Res 26:5009-5010
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 5009-5010
-
-
Paulin, R.1
Grigg, G.W.2
Davey, M.W.3
Piper, A.A.4
-
34
-
-
0025847497
-
Specific expression of the tobacco Tnt1 retrotransposon in protoplasts
-
Pouteau S, Huttner E, Grandbastien MA, Caboche M (1991) Specific expression of the tobacco Tnt1 retrotransposon in protoplasts. EMBO J 10:1911-1918
-
(1991)
EMBO J
, vol.10
, pp. 1911-1918
-
-
Pouteau, S.1
Huttner, E.2
Grandbastien, M.A.3
Caboche, M.4
-
35
-
-
0029765771
-
Demethylation-induced developmental pleiotropy in Arabidopsis
-
Ronemus MJ, Galbiati M, Ticknor C, Chen J, Dellaporta SL (1996) Demethylation-induced developmental pleiotropy in Arabidopsis. Science 273:654-657
-
(1996)
Science
, vol.273
, pp. 654-657
-
-
Ronemus, M.J.1
Galbiati, M.2
Ticknor, C.3
Chen, J.4
Dellaporta, S.L.5
-
36
-
-
0038515111
-
Commonality of self-recognition specificity of S haplotypes between Brassica oleracea and Brassica rapa
-
Sato Y, Fujimoto R, Toriyama K, Nishio T (2003) Commonality of self-recognition specificity of S haplotypes between Brassica oleracea and Brassica rapa. Plant Mol Biol 52:617-626
-
(2003)
Plant Mol Biol
, vol.52
, pp. 617-626
-
-
Sato, Y.1
Fujimoto, R.2
Toriyama, K.3
Nishio, T.4
-
37
-
-
33644613415
-
Dominance relationships between self-incompatibility alleles controlled by DNA methylation
-
Shiba H, Kakizaki T, Iwano M, Tarutani Y, Watanabe M, Isogai A, Takayama S (2006) Dominance relationships between self-incompatibility alleles controlled by DNA methylation. Nat Genet 38:297-299
-
(2006)
Nat Genet
, vol.38
, pp. 297-299
-
-
Shiba, H.1
Kakizaki, T.2
Iwano, M.3
Tarutani, Y.4
Watanabe, M.5
Isogai, A.6
Takayama, S.7
-
38
-
-
0035282119
-
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1)
-
Singer T, Yordan C, Martienssen RA (2001) Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev 15:591-602
-
(2001)
Genes Dev
, vol.15
, pp. 591-602
-
-
Singer, T.1
Yordan, C.2
Martienssen, R.A.3
-
39
-
-
0033637356
-
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene
-
Soppe WJJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, Koornneef M, Peeters AJM (2000) The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol Cell 6:791-802
-
(2000)
Mol Cell
, vol.6
, pp. 791-802
-
-
Soppe, W.J.J.1
Jacobsen, S.E.2
Alonso-Blanco, C.3
Jackson, J.P.4
Kakutani, T.5
Koornneef, M.6
Peeters, A.J.M.7
-
40
-
-
0037080492
-
Epigenetic variation in Arabidopsis disease resistance
-
Stokes TL, Kunkel BN, Richards EJ (2002) Epigenetic variation in Arabidopsis disease resistance. Genes Dev 16:171-182
-
(2002)
Genes Dev
, vol.16
, pp. 171-182
-
-
Stokes, T.L.1
Kunkel, B.N.2
Richards, E.J.3
-
41
-
-
0033136093
-
A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors
-
Takeda S, Sugimoto K, Otsuki H, Hirochika H (1999) A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J 18:383-393
-
(1999)
Plant J
, vol.18
, pp. 383-393
-
-
Takeda, S.1
Sugimoto, K.2
Otsuki, H.3
Hirochika, H.4
-
42
-
-
0035891265
-
A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
-
Tamaru H, Selker EU (2001) A histone H3 methyltransferase controls DNA methylation in Neurospora crassa. Nature 414:277-283
-
(2001)
Nature
, vol.414
, pp. 277-283
-
-
Tamaru, H.1
Selker, E.U.2
-
44
-
-
0037227689
-
Exploring plant genomes by RNA-induced gene silencing
-
Waterhouse PM, Helliwell CA (2003) Exploring plant genomes by RNA-induced gene silencing. Nat Rev Genet 4:29-38
-
(2003)
Nat Rev Genet
, vol.4
, pp. 29-38
-
-
Waterhouse, P.M.1
Helliwell, C.A.2
-
45
-
-
0034800385
-
Construct design for efficient, effective and high-throughput gene silencing in plants
-
Wesley SV, Helliwell CA, Smith NA, Wang MB, Rouse DT, Liu Q, Gooding PS, Singh SP, Abbott D, Stoutjgesdijk PA, Robinson SP, Gleave AP, Green AG, Waterhouse PM (2001) Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J 27:581-590
-
(2001)
Plant J
, vol.27
, pp. 581-590
-
-
Wesley, S.V.1
Helliwell, C.A.2
Smith, N.A.3
Wang, M.B.4
Rouse, D.T.5
Liu, Q.6
Gooding, P.S.7
Singh, S.P.8
Abbott, D.9
Stoutjgesdijk, P.A.10
Robinson, S.P.11
Gleave, A.P.12
Green, A.G.13
Waterhouse, P.M.14
-
46
-
-
33745466921
-
DNA methylation is critical for Arabidopsis embryogenesis and seed viability
-
Xiao W, Custard KD, Brown RC, Lemmon BE, Harada JJ, Goldberg RB, Fischer RL (2006) DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell 18:805-814
-
(2006)
Plant Cell
, vol.18
, pp. 805-814
-
-
Xiao, W.1
Custard, K.D.2
Brown, R.C.3
Lemmon, B.E.4
Harada, J.J.5
Goldberg, R.B.6
Fischer, R.L.7
-
47
-
-
1842681942
-
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
-
Zhang X, Wessler SR (2004) Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc Natl Acad Sci USA 101:5589-5594
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 5589-5594
-
-
Zhang, X.1
Wessler, S.R.2
|