Analysis of the predictability of time series obtained from genomic sequences by using several predictors

Journal of Intelligent and Fuzzy Systems

Volumn 19, Issue 1, 2008, Pages 51-63

  Teodorescu, Horia Nicolai ^a,b   Fira, Lucian Iulian ^b  

^a GHEORGHE ASACHI TECHNICAL UNIVERSITY OF IASI   (Romania)

^b ACADEMY OF ROMANIAN SCIENTISTS   (Romania)

Author keywords

Distance series; Genomic sequences; Predictability; Prediction performances; Recognition scores

Indexed keywords

DECISION SUPPORT SYSTEMS; MATHEMATICAL MODELS; MEAN SQUARE ERROR; TIME SERIES ANALYSIS;

GENOMIC SEQUENCES; PREDICTION PERFORMANCES; RECOGNITION SCORES;

GENES;

EID: 42149156075     PISSN: 10641246     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (22)

1. C.H. Wu and J.W. Mclarty, Neural Networks and Genome Informatics, Elsevier, SUA, 2000.
2. H.N. Teodorescu, Genetics, Gene Prediction, and Neuro-Fuzzy Systems-The Context and a Program Proposal, Fuzzy Systems & A.I.-Reports and Letters 9(1-3) (2003), 15-22.
3. H.N. Teodorescu and LI. Fira, Predicting the Genome Bases Sequences by means of distance sequences and a Neuro-Fuzzy Predictor, Fuzzy Systems & A.I. - Reports and Letters (1-3) (2003), 23-29.
4. L.I. Fira and H.N. Teodorescu, Genome Bases Sequences Characterization by a Neuro-Fuzzy Predictor, in: Proc. of the IEEE-EMBS 2003 Conference, 17-21 September, Cancun, Mexico.
5. H.N. Teodorescu and L.I. Fira, A Hybrid Data-Mining Approach in Genomics and Text Structures, in: Proc. of the Third IEEE International Conference on Data Mining ICDM '03, Melbourne, Florida, USA, November 19-22, 2003.
6. L.I. Fira and H.N. Teodorescu, Analiza unor secvente de baze din genom cu un predictor neuro-fuzzy, in: Proc. Simpozionul National de Sisteme Inteligente si Aplicatii, SIA'2003, 19-20 Septembrie 2003, Iasi.
7. H.N. Teodorescu and L.I. Fira, DNA Sequence Pattern Identification using A Combination of Neuro-Fuzzy Predictors, In Proc. of the 11th International Conference on Neural Information Processing, ICONIP2004, November 22-25, 2004 Science City, Calcutta.
8. E.W. Weisstein, Predictability, From MathWorld-A Wolfram Web Resource. http://mathworld.wolfram.com/Predictahility.html. © 1999 CRC Press LLC, ©1999-2005 Wolfram Research, Inc. Accessed: 31/MAR/2005.
9. E.W. Weisstein, "Redundancy". From MathWorld-A Wolfram Web Resource, http://mathworld.wolfram.com/ Redundancy.html, ©1999 CRC Press LLC, ©1999-2005 Wolfram Research, Inc. Accessed: 31/MAR/2005.
10. E.W. Weisstein, "Entropy". From MathWorld-A Wolfram Web Resource. http://mathworld.wolfram.com/Entropy.html, ©1999 CRC Press LLC, ©1999-2005 Wolfram Research, Inc. Accessed: 31/MAR/2005.
11. J.C. Sprott, Time-Series Analysis; http://sprott.physics.wisc. edu/lectures/tsa.ppt Accessed: 31/MAR/2005.
12. H.R. Madala and A.G. Ivakhnenko, Inductive Learning Algorithms for Complex System Modeling, 1994, CRC Press, ISBN: 0-8493-4438-7, p. 52.
13. E.W. Weisstein, Hurst Exponent, From MathWorld-A Wolfram Web Resource. http://mathworld.wolfram.com/HurstExponent.html, ©1999 CRC Press LLC, ©1999-2005 Wolfram Research, Inc. Accessed: 31/MAR/2005.
14. SYSTAT Software Inc., AutoSignal - HTML Help http:// www.systat.com/ products/AutoSignal/help/?sec=1138. Accessed: 31/MAR/2005.
15. M. Kaboudan, A Measure of Time-Series' Predictability Using Genetic Programming Applied to Stock Returns, Journal of Forecasting 18 (1999), 345-357.
16. M. Duan, Time Series Predictability, Master of Science Thesis, Faculty of the Graduate School, Marquette University, Milwaukee, Wisconsin, April 5, 2002.
17. A. Foka, Time Series Prediction Using Evolving Polynomial Neural Networks, A dissertation submitted to the University of Manchester Institute of Science and Technology for the degree of MSc, 1999.
18. N.R. Farnum and L.W. Stanton, Quantitative forecasting methods, PWS-Kent, Boston, USA, 1989.
19. T. Hellström, Predicting Stock Prices, Workshop on the ML2000 Project, Riga, University of Latvia, Latvia, November 28-29, 1997. http://www.cs.umu.se/~thomash/reports/ riga-97.pdf. Accessed: 31/Mar/2005.
20. H.N. Teodorescu and T. Yamakawa, Neuro-Fuzzy Systems: Hybrid configurations, in: Fuzzy Logic. Implementation and applications, M.J. Patyra and D. Mlynek, eds, Wiley & Teubner, 1996, pp. 267-298.
21. Los Alamos National Laboratory, http://hiv-web.lanl.gov/cgibin/ALIGN. CURRENT/ALIGN-INDEX.cgi. Accessed: 01/Mar/2005.
22. National Center for Biotechnology Information. http://www. ncbi.nlin.nih.gov/entrez/query.fcgi?CMD=search&DB= genome. Accessed: 01/Mar/2005.