Analysis of genetic diversity in a sweet potato (Ipomoea batatas L.) germplasm collection from Tanzania as revealed by AFLP

Genetic Resources and Crop Evolution

Volumn 55, Issue 3, 2008, Pages 397-408

  Elameen, Abdelhameed ^a,b   Fjellheim, Siri ^b   Larsen, Arild ^c   Rognli, Odd Arne ^b   Sundheim, Leif ^a   Msolla, Susan ^d   Masumba, Esther ^e   Mtunda, Kiddo ^e   Klemsdal, Sonja S ^a  

^a NORWEGIAN INSTITUTE OF BIOECONOMY RESEARCH   (Norway)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c Graminor   (Norway)

^d SOKOINE UNIVERSITY OF AGRICULTURE   (Tanzania)

^e Sugarcane Research Institute   (Tanzania)

Author keywords

AFLP; Genetic diversity; Ipomoea batatas; Sweet potato

Indexed keywords

CLUSTER ANALYSIS; DETECTION METHOD; DEVELOPING WORLD; GENETIC ANALYSIS; GENETIC VARIATION; GERMPLASM; POLYMORPHISM; POTATO;

AFRICA; EAST AFRICA; SUB-SAHARAN AFRICA; TANZANIA;

IPOMOEA BATATAS; MANIHOT ESCULENTA; TRITICUM AESTIVUM; ZEA MAYS;

EID: 42149142943     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-007-9247-0     Document Type: Article

References (47)

1. Austin DF (1977) Hybrids polyploids in Ipomoea section Batatas. J Hered 68:259-260
2. Austin DF (1988) The taxonomy, evolution and genetic diversity of sweet potato and related wild species. In: Gregory P (ed) Exploration, maintenance, and utilization of Sweet potato genetic resources. International Potato Center, Lima, Peru, pp. 27-60
3. Bonants PJM, Hagenaar-de Weerdt M, Man in't Veld WA, Baayen RP (2000) Molecular characterization of natural hybrids of Phytophthora nicotianae and P. cactorum. Phytopathology 90:867-874
4. Bouwkamp JC (1985) Introduction-Part1. In: Bouwkamp JC (eds), Sweet potato products: A natural resource for the tropics. CRC Press, Inc Boca Raton FL
5. CIP (1999). Sweetpotato Facts, a compendium of key figures and analysis for 33 important sweetpotato-producing countries. International Potato Center, Lima, Peru
6. Connolly AG, Godwin ID, Cooper M, Delacy IH (1994) Interpretation of randomly amplified polymorphic DNA marker data for fingerprinting sweet-potato (Ipomoea batatas L.) genotypes. Theor Appl Genet 88:332-336
7. Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297-302
8. Eikemo H, Klemsdal SS, Riisberg I, Bonants P, Stensvand A, Tronsmo AM (2004) Genetic variation between Phytophthora cactorum isolates differing in their ability to cause crown rot in strawberry. Mycological Res 108:317-324
9. Excoffier L, Smouse PE, Quattro JM1 (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
10. Excoffier L, Smouse PE (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species molecular variance parsimony. Genetics 136:343-359
11. Fajardo DD, La Bonte DR, Jarret RL (2002) Identifying and selecting genetic diversity in Papua New Guinea sweet potato Ipomoea batatas (L.) Lam. Germplasm collected as botanical seed. Genet Resour Crop Evol 49:463-470
12. FAO, Production Yearbook (2004) FAE Statistic Series No 134. Rome, Italy
13. Gepts P (1993) The use of molecular and biochemical markers in crop evolution studies. Evol Bio 27:51-94
14. Gichuki ST, Berenyi M, Zhang DP, Hermann M, Schmidt J, Glossl J, Burg K (2003) Genetic diversity in sweet potato (Ipomoea batatas (L.) in relationship to geographic sources as assessed with RAPD markers. Genet Resour Crop Evol 50:429-437
15. Harper JL (1977) Population biology of plants. Academic Press, London, p. 892
16. He GH, Prakash CS, Jarret Rl (1995) Analysis of genetic diversity in sweet potato (Ipomoea batatas) germplasm collection using DNA amplification fingerprinting. Genome 38:938-945
17. Hu J, Nakatani M, Lalusin A, Kuranouchi T, Fujimura T (2003) Genetic analysis of sweet potato and wild relatives using Inter-simple Sequence Repeats (ISSRs). Breed Sci 53:297-304
18. Huaman Z, Zhang DP (1997) Sweet potato. In: Fuccillo D, Sears L, Stapleton P (eds) Biodiversity in trust. Cambridge University Press, Cambridge, UK, pp. 29-38
19. Huaman Z (1999) Botany, origin, evolution and biodiversity of the sweet potato. In: Huaman Z (eds) Sweet potato Germplasm Management Training Manual. International Potato Center, Lima Peru, pp. 1-11
20. Huaman Z, Aguilar C, Ortiz R (1999) Selecting a Peruvian sweetpotato core collection on the basis of morphological, eco-geographical, and disease and pest reaction data. Theor Appl Genet 98:840-844
21. Huang JC, Sun M (2000) Genetic diversity and relationships of sweet potato and its wild relatives in Ipomoea series batatas (Convolvulaceae) as revealed by inter-simple sequence repeat (ISSR) and restriction analysis of chloroplast DNA. Theor Appl Genet 100:1050-1060
22. Huang J, Corke H, Sun M (2002) Highly polymorphic AFLP markers as a complementary tool to ITS sequences in assessing genetic diversity and phylogenetic relationships of sweet potato (Ipomoea batatas (L.) Lam.) and its wild relatives. Genet Resour Crop Evol 49:541-550
23. Hwang SY, Tseng YT, Lo HF (2002) Application of simple sequence repeats in determining the genetic relationships of cultivars used in sweet potato polycross breeding in Taiwan. Sci Hortic 93:215-224
24. Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat 44:223-270
25. Kapinga R, Ewell PT, Jeremiah SC, Kileo R (1995) Sweet potato in Tanzanian farming and food system: Implications for Research. A farming systems survey report. Tanzania National Root and Tuber Crops and Farming Systems Research Programme and the International Potato Centre, Nairobi, Kenya
26. Kennedy LS, Thompson PG (1991) Identification of sweet-potato cultivars using isozyme analysis. Hortscience 26:300-302
27. Kuo CG (1991) Conservation and distribution of sweet potato germplasm. In: Dodds JH (eds) In Vitro methods for Conservation of Plant Genetic Resources, Chapman and Hall, New York, pp. 123-147
28. McGregor CE, Lambert CA, Greyling MM, Louw JH, Warnich L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 113:135-144
29. Mok I, Zhang D, Carey E (1997) Sweet potato breeding strategy of CIP. In LaBonte D.R., Yamashita M., and Mochida H. (eds.) Proceedings of international workshop on sweet potato production system towards the 21st Century. Dec 1997:9-27
30. National Research Council (1993) Agricultural crop issues and policies: managing global genetic resources, vol. I. National Research Council (U.S.A.), Washington, D.C
31. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 3:225-238
32. Prakash CS, He GH, Jarret RL (1996) DNA marker-based study of genetic relatedness in United States sweetpotato cultivars. J Am Soc Hortic Sci 121:1059-1062
33. Rao VR, Debouck T, Iwanga M (1994) The role of international organisations in root and tuber crop conservation. In: The first ministry of Agriculture, Forestry and Fisheries, Japan International Workshop on Genetic Resources - Root and Tuber Crops, 15-17 March 1994, Tsukuba, MAFF, Japan, pp. 7-22
34. Rohlf FJ (2000) NTSYS-pc, numerical taxonomy and multivariate analysis system, v.2.02. New York: Exeter software
35. Sagredo B, Hinrichsen P, López H, Cubillos A, Munoz C (1998) Genetic variation of sweet potatoes (Ipomoea batatas L.) cultivated in Chile determined by RAPDs. Euphytica 101:193-198
36. Schneider R, Roessli D, Excoffier L (2000) Arlequin: A software for Population Genetics Data Analysis, Version 2.000 Genetic and Biometry Laboratory. Department of Anthropology, University of Geneva, Switzerland
37. Schultheis JR, Cantliffe DJ, Bryan HH (1994) Early plant-growth and yield of sweet-potato grown from seed, vegetative cuttings, and somatic embryos J Amer Soc Hort Sci 119:1104-1111
38. Sneath PA, Sokal RR (1973) Numerical taxonomy. Freeman, San Francisco
39. Tseng YT, Lo HF, Hwang SY (2002) Genotyping and assessment of genetic relationships in elite polycross breeding cultivars of sweet potato in Taiwan based on SAMPL polymorphisms. Bot Bull Acad Sinica 43:99-105
40. Ugent D, Peterson LW (1988) Archaeological remains of potato and sweet potato in Peru. CIP Circular 16:1-10
41. Vaughan JG, Geissler CA (1997) The new Oxford book of food plants. Oxford University Press, Oxford, UK
42. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Freijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
43. Wambugu FM (2003) Development and transfer of genetically modified virus-resistant sweet potato for subsistence farmers in Kenya. Nutrition Reviews 61:110-113
44. Woolfe JA (1992) Sweet potato, an untapped food resource. Cambridge University Press, New York
45. Zhang D, Ghislain M, Huaman Z, Golmirzaie A, Hijmans R (1998) RAPD variation in sweet potato (Ipomoea batatas (L.) Lam.) cultivars from South America and Papua New Guinea. Genet Resour Crop Evol 45:271-277
46. Zhang D, Cervantes J, Huaman EC, Ghislain M (2000) Assessing genetic diversity of sweet potato (Ipomoea batatas (L.) Lam.) cultivars from tropical America using AFLP. Genet Resour Crop Evol 47:659-665
47. Zhang D, Rossel G, Kriegner A, Hijmans R (2004) AFLP assessment of diversity in sweet potato from Latin America and the Pacific region: Its implications on the dispersal of the crop. Genet Resour Crop Evol 51:115-120