Improving light and temperature based geolocation by unscented Kalman filtering

Fisheries Research

Volumn 91, Issue 1, 2008, Pages 15-25

  Lam, Chi H ^a   Nielsen, Anders ^b   Sibert, John R ^b  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b UNIVERSITY OF HAWAII   (United States)

Author keywords

Archival tag; Light based geolocation; Pop up satellite archival tag; Sea surface temeperature; UKFSST; Unscented Kalman filter (UKF)

Indexed keywords

ANIMALIA;

EID: 42149123701     PISSN: 01657836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fishres.2007.11.002     Document Type: Article

References (49)

1. Ådlandsvik B., Huse G., and Michalsen K. Introducing a method for extracting horizontal migration patterns from data storage tags. Hydrobiologia 582 (2007) 187-197
2. Andersen K., Nielsen A., Thygesen U., Hinrichsen H., and Neuenfeldt S. Using the particle filter to geolocate Atlantic cod (Gadus morhua) in the Baltic sea, with special emphasis on determining uncertainty. Can. J. Fish Aquat. Sci. 64 4 (2007) 618-627
3. Arnold G., and Dewar H. Electronic tags in marine fisheries research: a 30-year perspective. In: Sibert J.R., and Nielsen J.L. (Eds). Electronic Tagging and Tracking in Marine Fisheries Reviews: Methods and Technologies in Fish Biology and Fisheries (2001), Kluwer Academic Press, Dordrecht 7-64
4. Block B.A., Dewar H., Blackwell S.B., Williams T.D., Prince E.D., Farwell C.J., Boustany A., Teo S.L.H., Seitz A., Walli A., and Fudge D. Migratory movements, depth preferences, and thermal biology of Atlantic bluefin tuna. Science 293 5533 (2001) 1310-1314
5. Block B.A., Teo S.L.H., Walli A., Boustany A., Stokesbury M.J.W., Farwell C.J., Weng K.C., Dewar H., and Williams T.D. Electronic tagging and population structure of Atlantic bluefin tuna. Nature 434 7037 (2005) 1121-1127
6. Bonfil R., Meyer M., Scholl M.C., Johnson R., O'Brien S., Oosthuizen H., Swanson S., Kotze D., and Paterson M. Transoceanic migration, spatial dynamics, and population linkages of white sharks. Science 310 5745 (2005) 100-103
7. Dagorn L., Holland K.N., and Itano D.G. Behavior of yellowfin (Thunnus albacares) and bigeye (Thunnus obesus) tuna in a network of fish aggregating devices (FADs). Mar. Biol. 151 2 (2007) 595-606
8. Domeier M.L. An analysis of Pacific striped marlin (Tetrapturus audax) horizontal movement patterns using pop-up satellite archival tags. Bull. Mar. Sci. 79 3 (2006) 811-825 (15)
9. Domeier M.L., Kiefer D., Nasby-Lucas N., Wagschal A., and O'Brien F. Tracking Pacific bluefin tuna (Thunnus thynnus orientalis) in the northeastern Pacific with an automated algorithm that estimates latitude by matching sea-surface-temperature data from satellites with temperature data from tags on fish. Fish. Bull. 103 2 (2005) 292-306
10. Ekstrom P. An advance in geolocation by light. In: Naito Y. (Ed). Memoirs of the National Institue of Polar Research (Special Issue) (2004), National Institute of Polar Research, Tokyo 210-226
11. Finkel R.A., and Bentley J.L. Quad trees: a data structure for retrieval on composite keys. Acta Inform. 4 (1974) 1-9
12. Graves J.E., Luckhurst B.E., and Prince E.D. An evaluation of pop-up satellite tags for estimating postrelease survival of blue marlin (Makaira nigricans) from a recreational fishery. Fish. Bull. 100 1 (2002) 134-142
13. Gröger J.P., Rountree R.A., Thygesen U.H., Jones D., Martins D., Xu Q., and Rothschild B.J. Geolocation of Atlantic cod (Gadus morhua) movements in the Gulf of Maine using tidal information. Fish Oceanogr. 16 4 (2007) 317-335
14. Gunn, J.S., Polachek, T., Davis, T., Sherlock, M., Betlehem, A., 1994. The development and use of archival tags for studying the migration, behaviour and physiology of bluefin tuna, with an assessment of the potential for transfer of the technology for groundfish research. In: ICES C.M. Mini, pp. 1-23.
15. Gunn J., and Block B. Advances in acoustic, archival, and satellite tagging of tunas. In: Block B.A., and Stevens E.D. (Eds). Tuna Physiology, Ecology, and Evolution (2001), Academic Press, New York 167-224
16. Harvey A.C. Forecasting, Structural Time Series Models and the Kalman Filter (1990), Cambridge University Press, Cambridge
17. Hill R. Theory of geolocation by light levels. In: LeBoeuf B., and Laws R. (Eds). Elephant Seals: Population Ecology, Behaviour, and Physiology (1994), University of California Press, Berkeley 227-236
18. Hill R., and Braun M. Geolocation by light level-the next step: latitude. In: Sibert J.R., and Nielsen J.L. (Eds). Electronic Tagging and Tracking in Marine Fisheries (2001), Kluwer Academic Publishers, Dordrecht 315-330
19. Horodysky A.Z., and Graves J.E. Application of pop-up satellite archival tag technology to estimate postrelease survival of white marlin (Tetrapturus albidus) caught on circle and straight-shank ("J") hooks in the western north Atlantic recreational fishery. Fish. Bull. 103 1 (2005) 84-96
20. Hunter E., Aldridge J.N., Metcalfe J.D., and Arnold G.P. Geolocation of free-ranging fish on the European continental shelf as determined from environmental variables. i. Tidal location method. Mar. Biol. 142 3 (2003) 601-609
21. Julier S.J., Uhlmann J.K., and Durrant-Whyte H.F. A new method for the nonlinear transformation of means and covariances in filters and estimators. IEEE Trans. Autom. Control 45 (2000) 477-482
22. Lutcavage M.E., Brill R.W., Skomal G.B., Chase B.C., and Howey P.W. Results of pop-up satellite tagging of spawning size class fish in the Gulf of Maine: do north Atlantic bluefin tuna spawn in the mid-Atlantic?. Can. J. Fish Aquat. Sci. 56 2 (1999) 173-177
23. Malte H., Larsen C., Musyl M., and Brill R. Differential heating and cooling rates in bigeye tuna (Thunnus obesus Lowe): a model of non-steady state heat exchange. J. Exp. Biol. 210 15 (2007) 2618-2626
24. Metcalfe J. Summary report of a workshop on daylight measurements for geolocation in animal telemetry. In: Sibert J.R., and Nielsen J.L. (Eds). Electronic Tagging and Tracking in Marine Fisheries (2001), Kluwer Academic Publishers, Dordrecht 443-456
25. Moyes C.D., Fragoso N., Musyl M.K., and Brill R.W. Predicting postrelease survival in large pelagic fish. Trans. Am. Fish Soc. 135 5 (2006) 1389-1397
26. Musyl M., Brill R., Curran D., Gunn J.S., Hartog J., Hill R., Welch D.W., Eveson J.P., Boggs C.H., and Brainard R. Ability of archival tags to provide estimates of geographical position based on light intensity. In: Sibert J.R., and Nielsen J.L. (Eds). Electronic Tagging and Tracking in Marine Fisheries (2001), Kluwer Academic Publishers, Dordrecht 343-368
27. Musyl M.K., Brill R.W., Boggs C.H., Curran D.S., Kazama T.K., and Seki M.P. Vertical movements of bigeye tuna (Thunnus obesus) associated with islands, buoys, and seamounts near the main Hawaiian islands from archival tagging data. Fish Oceanogr. 12 3 (2003) 152-169
28. Nielsen A., Bigelow K.A., Musyl M.K., and Sibert J.R. Improving light-based geolocation by including sea surface temperature. Fish Oceanogr. 15 4 (2006) 314-325
29. Nielsen, A., Sibert, J.R., 2004. KFtrack: an R-package to efficiently estimate movement parameters and predict "most probable track" from raw geo-locations of tagged individuals. Available at: http://www.soest.hawaii.edu/tag-data/tracking/kftrack.
30. Nielsen, A., Sibert, J.R., 2005. KFSST: an R-package to efficiently estimate the most probable track from light-based longitude, latitude and SST. Available at: http://www.soest.hawaii.edu/tag-data/tracking/kfsst.
31. NOAA, 2007a. NOAA CoastWatch Program West Coast regional node dataset summary for blended sea surface temperature. Available at: http://coastwatch.pfel.noaa.gov/infog/BA_ssta_las.html.
32. NOAA, 2007b. NOAA CoastWatch Program West Coast regional node, Bloomwatch 360. Available at: http://coastwatch.pfeg.noaa.gov/coastwatch/CWBrowserWW360.jsp.
33. Reynolds R.W., and Smith T.M. Improved global sea-surface temperature analyses using optimum interpolation. J. Clim. 7 6 (1994) 929-948
34. Royer F., Fromentin J.M., and Gaspar P. A state-space model to derive bluefin tuna movement and habitat from archival tags. Oikos 109 3 (2005) 473-484
35. Schaefer K.M., and Fuller D.W. Movements, behavior, and habitat selection of bigeye tuna (Thunnus obesus) in the eastern Equatorial Pacific, ascertained through archival tags. Fish Bull. 100 4 (2002) 765-788
36. Schaefer, K.M., Fuller, D.W., Block, B.A., 2007. Movements, behavior, and habitat utilization of yellowfin tuna (Thunnus albacares) in the northeastern Pacific Ocean, ascertained through archival tag data. Mar Biol 10.1007/s00227-007-0689-x.
37. Sibert J.R., and Fournier D.A. Possible models for combining tracking data with conventional tagging data. In: Sibert J.R., and Nielsen J.L. (Eds). Electronic Tagging and Tracking in Marine Fisheries Reviews: Methods and Technologies in Fish Biology and Fisheries (2001), Kluwer Academic Press, Dordrecht 443-456
38. Sibert J.R., Musyl M.K., and Brill R.W. Horizontal movements of bigeye tuna (Thunnus obesus) near hawaii determined by Kalman filter analysis of archival tagging data. Fish Oceanogr. 12 3 (2003) 141-151
39. Sibert J.R., Lutcavage M.E., Nielsen A., Brill R.W., and Wilson S.G. Interannual variation in large-scale movement of Atlantic bluefin tuna (Thunnus thynnus) determined from pop-up satellite archival tags. Can. J. Fish Aquat. Sci. 63 10 (2006) 2154-2166
40. Smith, P., Goodman, D., 1986. Determining fish movement from an "archival" tag: precision of geographical positions made from a time series of swimming temperature and depth. Tech. Rep. NOAA-TM-NMFSSWFC-60. NOAA Technical Memorandum.
41. Stokesbury M.J.W., Teo S.L.H., Seitz A., O'Dor R.K., and Block B.A. Movement of Atlantic bluefin tuna (Thunnus thynnus) as determined by satellite tagging experiments initiated off new England. Can. J. Fish Aquat. Sci. 61 10 (2004) 1976-1987
42. Teo S.L.H., Boustany A., Blackwell S., Walli A., Weng K.C., and Block B.A. Validation of geolocation estimates based on light level and sea surface temperature from electronic tags. Mar. Ecol. Prog. Ser. 283 (2004) 81-98
43. Tsontos, V.M., O'Brien, F.J., Domeier, M.L., Lam, C.H., 2006. Description of an improved algorithm for automated archival tag geolocational estimation based on the matching of satellite SST and in situ temperature data: application to striped marlin (Tetrapturus audax) in the north Pacific. In: ICES C.M. 2006/Q:17, pp. 1-13.
44. Vazquez, J., Perry, K., Kilpatrick, K., 1998. NOAA/NASA AVHRR oceans pathfinder sea surface temperature data set user's reference manual, version 4.0. Tech. Rep. JPL Publication D-14070, 10 April 1998. Jet Propulsion Laboratory.
45. Walton C.C., Pichel W.G., Sapper J.F., and May D.A. The development and operational application of nonlinear algorithms for the measurement of sea surface temperatures with the NOAA polar-orbiting environmental satellites. J. Geophys. Res. C 103 C12 (1998) 27999-28012
46. Welch D.W., and Eveson J.P. An assessment of light-based geoposition estimates from archival tags. Can. J. Fish Aquat. Sci. 56 7 (1999) 1317-1327
47. Weng K.C., Castilho P.C., Morrissette J.M., Landeira-Fernandez A.M., Holts D.B., Schallert R.J., Goldman K.J., and Block B.A. Satellite tagging and cardiac physiology reveal niche expansion in salmon sharks. Science 310 5745 (2005) 104-106
48. Wilson R., Ducamp J., Rees W., Culik B., and Neikamp K. Estimation of location: global coverage using light intensity. In: Priede I., and Swift S. (Eds). Wildlife Telemetry: Remote Monitoring and Tracking of Animals (1992), Ellis Horwood, New York 131-134
49. Wilson S.G., Lutcavage M.E., Brill R.W., Genovese M.P., Cooper A.B., and Everly A.W. Movements of bluefin tuna (Thunnus thynnus) in the northwestern Atlantic Ocean recorded by pop-up satellite archival tags. Mar. Biol. 146 2 (2005) 409-423