A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774

Journal of Inorganic Biochemistry

Volumn 102, Issue 5-6, 2008, Pages 1380-1395

  Gavel, Olga Yu ^a   Bursakov, Sergey A ^a   Rocco, Giulia Di ^a   Trincão, José ^a   Pickering, Ingrid J ^b   George, Graham N ^b   Calvete, Juan J ^c   Shnyrov, Valery L ^d   Brondino, Carlos D ^a   Pereira, Alice S ^a   Lampreia, Jorge ^a   Tavares, Pedro ^a   Moura, José J G ^a   Moura, Isabel ^a  

^a DEPARTAMENTO DE QUÍMICA   (Portugal)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

^c INSTITUTO DE BIOMEDICINA DE VALENCIA   (Spain)

^d UNIVERSITY OF SALAMANCA   (Spain)

Author keywords

Adenylate kinase; Cobalt; Sulfate reducing bacteria; Zinc

Indexed keywords

ADENYLATE KINASE; COBALT; CYSTEINE DERIVATIVE; HISTIDINE; SULFUR; ZINC;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CONTROLLED STUDY; DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO GIGAS; ELECTRON SPIN RESONANCE; ENZYME ACTIVITY; ENZYME BINDING; ENZYME ISOLATION; IONIC STRENGTH; METAL BINDING; MOLECULAR WEIGHT; NONHUMAN; PH; PROTEIN DOMAIN; PROTEIN PURIFICATION; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; SPECTROSCOPY; SULFATE REDUCER;

ABSORPTIOMETRY, PHOTON; ADENYLATE KINASE; AMINO ACID SEQUENCE; APOENZYMES; BINDING SITES; COBALT; DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO GIGAS; ELECTRON SPIN RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OSMOLAR CONCENTRATION; PROTEIN STRUCTURE, TERTIARY; PYRIMIDINES; SEQUENCE ALIGNMENT; SPECTROPHOTOMETRY, ULTRAVIOLET; ZINC;

DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO GIGAS; POSIBACTERIA;

EID: 42049099260     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2008.01.023     Document Type: Article

References (87)

1. Noda L. In: Boyer P.D. (Ed). The Enzymes, Adenylate Kinase. third ed. vol. 8 (1973), Academic Press 279-305
2. Small G.D., and Cooper C. Biochemistry 5 (1966) 26-33
3. Kupriyanov V.V., Ferretti J.A., and Balaban R.S. Biochim. Biophys. Acta 869 (1986) 107-111
4. Fry D.C., Kuby S.A., and Mildvan A.S. Biochemistry 26 (1987) 1645-1655
5. Yan H., and Tsai M.D. Adv. Enzymol. Relat. Areas Mol. Biol. 73 (1999) 103-134
6. Krishnamurthy H., Lou H., Kimple A., Vieille C., and Cukier R.I. Proteins: Struct. Funct. Bioinform. 58 (2005) 88-100
7. Lu Q., and Inoue M. Proc. Natl. Acad. Sci. USA 93 (1996) 5720-5725
8. Müller C.W., Schlauderer G.J., Reinstein J., and Schulz G.E. Structure 4 (1996) 147-156
9. Perrier V., Burlacu-Miron S., Bourgeois S., Surewicz W.K., and Gilles A.M. J. Biol. Chem. 273 (1998) 19097-19101
10. Schlattner U., Wagner E., Greppin H., and Bonzon M. J. Plant. Physiol. 144 (1994) 400-409
11. Van Rompay A.R., Johansson M., and Karlsson A. Pharmacol. Therapeut. 87 (2000) 189-198
12. Ren H., Wang L., Bennet M., Liang Yu., Zheng X., Lu F., Li L., Nan J., Luo M., Eriksson S., Zhang C., and Su X. PNAS 102 (2005) 303-308
13. Ferber D.M., Haney P.J., Berk H., Lynn D., and Konisky J. Gene 185 (1997) 239-244
14. Kath T., Schmid R., and Schäfer G. Arch. Biochem. Biophys. 307 (1993) 405-410
15. Vonrhein C., Bönisch H., and Schäfer G. J. Mol. Biol. 282 (1998) 167-179
16. Munier-Lehmann H., Burlacu-Miron S., Craescu C.T., Mantsch H.H., and Schultz C.P. Proteins: Struct., Funct., Genet. 36 (1999) 238-248
17. Müller C.W., and Schultz G.E. J. Mol. Biol. 224 (1992) 159-177
18. Berry M.B., and Philips Jr. G.N. Proteins 32 (1998) 276-288
19. Gilles A.M., Glaser P., Perrier V., Meier A., Longin R., Sebald M., Maignan L., Pistotnik E., and Barzu O. J. Bacteriol. 176 (1994) 520-523
20. Bae E., and Phillips Jr. G.N. J. Biol. Chem. 279 (2004) 28202-28208
21. Deligiannakis Y., Boussac A., Bottin H., Perrier V., Barzu O., and Gilles A.M. Biochemistry 36 (1997) 9446-9452
22. Perrier V., Burlacu-Miron S., Boussac A., Meier A., and Gilles A.M. Protein Eng. 11 (1998) 917-923
23. Miura K., Inouye S., Skai K., Takaoka H., Kishi F., Tabuchi M., Tanaka T., Matsumoto H., Shirai M., Nakazawa T., and Nakazawa A. J. Biol. Chem. 276 (2001) 13490-13498
24. Vieille C., Krishnamurthy H., Hyun H.H., Savchenko A., Yan H., and Zeikus J.G. Biochem. J. 372 (2003) 577-585
25. Schlauderer G.J., and Schulz G.E. Protein Sci. 5 (1996) 434-441
26. Schlattner U., Wagner E., Greppin H., and Bonzon M. Biochem. Biophys. Res. Commun. 217 (1995) 509-514
27. Glaser P., Presecan E., Delepierre M., Surewicz W.K., Mantsch H.H., Barzu O., and Gilles A.M. Biochemistry 31 (1992) 3038-3043
28. Burlacu-Miron S., Perrier V., Gilles A.M., Pistotnik E., and Craescu C.T. J. Biol. Chem. 273 (1998) 19102-19107
29. Jaenicke R. Eur. J. Biochem. 202 (1991) 715-728
30. LeGall J., Mazza G., and Dragoni N. Biochim. Biophys. Acta 99 (1965) 385-387
31. Liu M.C., and Peck Jr. H.D. J. Biol. Chem. 256 (1981) 13159-13164
32. Barzu O., and Michelson S. FEBS Lett. 153 (1983) 280-284
33. Saint Girons I., Gilles A.M., Margarita D., Michelson S., Monnot M., Fermanjian S., Danchin A., and Bârzu O. J. Biol. Chem. 262 (1987) 622-629
34. Lacher K., and Schäfer G. Arch. Biochem. Biophys. 302 (1993) 391-397
35. Laemmly U.K. Nature 227 (1970) 680-685
36. Cramer S.P., Tench O., Yocum M., and George G.N. Nucl. Instrum. Methods Phys. Res. A 266 (1988) 586-591
37. Rehr J.J., Mustre de Leon J., Zabinsky S.I., and Albers R.C. J. Am. Chem. Soc. 113 (1991) 5135-5140
38. Mustre de Leon J., Rehr J.J., Zabinsky S.I., and Albers R.C. Phys. Rev. B 44 (1991) 4146-4156
39. Giedroc D.P., Keating K.M., Williams K.R., Konigsberg W.H., and Coleman J.E. Proc. Natl. Acad. Sci. USA 83 (1986) 8452-8456
40. Hunt J.B., Neece S.H., Schachman H.K., and Ginsburg A. J. Biol. Chem. 259 (1984) 14793-14803
41. Rusnak P., Haney P., and Konisky J. J. Bacteriol. 177 (1995) 2977-2981
42. Ito Y., Tomasselli A.G., and Noda L.H. Eur. J. Biochem. 105 (1980) 85-92
43. Yang G., Yu X., Wu Z., Xu J., Song L., Zhang H., Hu X., Zheng N., Guo L., Xu J., Dai J., Ji C., Gu S., and Ying K. Parasitol. Res. 95 (2005) 406-412
44. Itakura T., Watanabe K., Shiokawa H., and Kubo S. Eur. J. Biochem. 82 (1978) 431-437
45. Bencini A., Bertini I., Canti G., Gatteschi D., and Luchinat C. J. Inorg. Biochem. 14 (1981) 81-93
46. Grell E., and Bray R.C. Biochim. Biophys. Acta 236 (1971) 503-506
47. Sytkowski A.J., and Vallee B.L. Biochemistry 17 (1978) 2850-2857
48. Makinen M.W., and Yim M.B. Proc. Natl. Acad. Sci. USA 78 (1981) 6221-6225
49. Martinelli R.A., Hanson G.R., Thompson J.S., Holmquist B., Pilbrow J.R., Auld D.S., and Vallee B.L. Biochemistry 28 (1989) 2251-2258
50. Moura I., Teixeira M., LeGall J., and Moura J.J.G. J. Inorg. Bioch. 44 (1991) 127-139
51. Gavel O.Yu., Bursakov S.A., Calvete J., George G., Moura J.J.G., and Moura I. Biochemistry 37 (1998) 16225-16232
52. Bonander N., Vänngård T., Tsai L.-C., Langer V., Nar H., and Sjölin L. Proteins: Struct., Funct., Genet. 27 (1997) 385-394
53. Petrovich R.M., Ruzicka F.J., Reed G.H., and Frey P.A. J. Biol. Chem. 266 (1991) 7656-7660
54. Gruff E.S., and Koch S.A. J. Am. Chem. Soc. 111 (1989) 8762-8763
55. Otto J., Jolk I., Viland T., Wonnemann R., and Krebs B. Inorg. Chim. Acta 285 (1999) 262-268
56. Wilker J.J., and Lippard S.J. J. Am. Chem. Soc. 117 (1995) 8682-8683
57. Taguchi Y., Sugishima M., and Fukuyama K. Biochemistry 43 (2004) 4111-4118
58. Bellamacina C.R. FASEB J. 10 (1996) 1257-1269
59. Berry M.B., Meador B., Bilderback T., Liang P., Glaser M., and Phillips Jr. G.N. Proteins 19 (1994) 183-198
60. Gavel O.Yu., Bursakov S.A., Pina D.G., Zhadan G.G., Moura J.J.G., Moura I., and Shnyrov V.L. Biophys. Chem. 110 (2004) 83-92
61. Spurgin P., Tomasselli A.G., and Schiltz E. Eur. J. Biochem. 179 (1989) 621-628
62. Bertini I., Luchinat C., and Viezzoli S. In: Bertini I., Luchinat C., Maret W., and Zeppezauer M. (Eds). Zinc Enzymes (1986), Birkhauser, Boston 27-47
63. Konrad M. J. Biol. Chem. 286 (1993) 11326-11334
64. Brune M., Schumann R., and Wittinghofer F. Cloning Nucleic Acids Res. 13 (1985) 7139-7151
65. Fauque G., and Ollivier B. In: Bull A.T. (Ed). Microbiol Diversity and Bioprospecting. Anaerobes: The Sulfate-Reducing Bacteria as an Example of Metabolic Diversity (2003), ASM Press, Wachington, DC, USA 169-176 (Chapter 3.6)
66. Gilles A.M., Sismeiro O., Munier H., Fabian H., Mantsch H.H., Surewicz W.K., Craescu C.C., Barzu O., and Danchin A. Eur. J. Biochem. 218 (1993) 921-927
67. Backmann J., Schafer G., Wyns L., and Bonisch H. J. Mol. Biol. 284 (1998) 817-833
68. Strupat K., Šagi D., Bönisch H., Schäfer G., and Peter-Katalinic J. Analyst 125 (2000) 563-567
69. Okajima T., Kitaguchi D., Fujii K., Matsuoka H., Goto S., Uchiyama S., Kobayashi Y., and Tanizawa K. Biosci. Biotechnol. Biochem. 66 (2002) 2112-2124
70. Swenson D., Baenziger N.C., and Coucouvanis D. J. Am. Chem. Soc. 100 (1978) 1932-1934
71. May S.W., and Kuo J.-Y. Biochemistry 17 (1978) 3333-3338
72. Vašák M., Kagi G.N.R., Holmquist B., and Vallee B.L. Biochemistry 20 (1981) 6659-6664
73. Bertini I., and Luchinat C. Adv. Inorg. Biochem. 6 (1984) 71-111
74. Guo J., and Giedroc D.P. Biochemistry 36 (1997) 730-742
75. Krizek B.A., Merkle D.L., and Berg J.M. Inorg. Chem. 32 (1993) 937-940
76. Maret W., and Vallee B.L. Methods Enzymol. 226 (1993) 52-71
77. Huheey J.E. Inorganic Chemistry: Principles of Structure and Reactivity. third ed. (1983), Harper and Row, New York
78. Frankel A.D., Berg J.M., and Pabo C.O. Proc. Natl Acad. Sci. USA 84 (1987) 4841-4845
79. Mackay J.P., Kowalski K., Czolij R., King G.F., and Crossley M. J. Biol. Chem. 273 (1998) 30560-30567
80. Matthews J.M., Kowalski K., Liew C.K., Sharpe B.K., Fox A.H., Crossley M., and Mackay J.P. Eur. J. Biochem. 267 (2000) 1030-1038
81. Lane R.W., Ibers J.A., Frankel R.B., Papaefthymiou G.C., and Holm R.H. J. Am. Chem. Soc. 99 (1977) 84-98
82. Maret W., Andersson I., Dietrich H., Schneider-Bernlöhr H., Einarsson R., and Zeppezauer M. Eur. J. Biochem. 98 (1979) 501-512
83. Good M., and Vašák M. Biochemistry 25 (1986) 3328-3334
84. Maret W., and Vallee B.L. Proc. Natl. Acad. Sci. USA 95 (1988) 3478-3482
85. Vallee B.L., and Auld D.S. Acc. Chem. Res. 26 (1990) 543-551
86. Perrier V., Surewicz W.K., Glaser P., Martineau L., Craescu C.T., Fabian H., Mantsch H.H., Barzu O., and Gilles A.M. Biochemistry 33 (1994) 9960-9967
87. Kabsch W., and Sanders C. Biopolymers 22 (1983) 2577-2637