FTIR microspectroscopy coupled with two-class discrimination segregates markers responsible for inter- and intra-category variance in exfoliative cervical cytology

Biomarker Insights

Volumn 2008, Issue 3, 2008, Pages 179-189

  Walsh, Michael J ^a   Singh, Maneesh N ^a,b   Stringfellow, Helen F ^b   Pollock, Hubert M ^c   Hammiche, Azzedine ^c   Grude, Olaug ^c   Fullwood, Nigel J ^a   Pitt, Mark A ^b   Martin Hirsch, Pierre L ^a,b   Martin, Francis L ^a  

^a LANCASTER UNIVERSITY   (United Kingdom)

^b LANCASHIRE TEACHING HOSPITALS NHS FOUNDATION TRUST   (United Kingdom)

^c LANCASTER UNIVERSITY   (United Kingdom)

Author keywords

Biomarker; Cervical cytology; Fourier transform infrared microspectroscopy; High grade; Low grade; Principal component analysis

Indexed keywords

AMIDE; CARBOHYDRATE; GLYCOPROTEIN;

ANALYSIS OF VARIANCE; ARTICLE; CANCER GRADING; CANCER SCREENING; CELL DIFFERENTIATION; CONTROLLED STUDY; DISCRIMINANT ANALYSIS; DNA CONFORMATION; EXPOLIATIVE CEVICAL CYTOLOGY; FEMALE; HUMAN; HUMAN CELL; HUMAN TISSUE; INFRARED SPECTROMETRY; INFRARED SPECTROSCOPY; INTERMETHOD COMPARISON; PRINCIPAL COMPONENT ANALYSIS; UTERINE CERVIX CARCINOMA IN SITU; UTERINE CERVIX CYTOLOGY;

EID: 41949098986     PISSN: None     EISSN: 11772719     Source Type: Journal    
DOI: 10.4137/bmi.s592     Document Type: Article

References (32)

1. Andrus, P.G. and Strickland, R.D. 1998. Cancer grading by Fourier transform infrared spectroscopy. Biospectroscopy, 4:37-46.
2. Argov, S., Ramesh, J., Salman, A., Sinelikov, I., Goldstein, J., Guterman, H. and Mordechai, S. 2002. Diagnostic potential of Fourier-transform infrared microspectroscopy and advanced computational methods in colon cancer patients. J. Biomed. Opt., 7:248-54.
3. Argov, S., Sahu, R.K., Bernshtain, E., Salman, A., Shohat, G., Zelig, U. and Mordechai, S. 2004. Inflammatory bowel diseases as an intermediate stage between normal and cancer: a FTIR-microspectroscopy approach. Biopolymers, 75:384-92.
4. Barber, J.L., Walsh, M.J., Hewitt, R., Jones, K.C. and Martin, F.L. 2006. Low-dose treatment with polybrominated diphenyl ethers (PBDEs) induce altered characteristics in MCF-7 cells. Mutagenesis, 21:351-60.
5. Bentley, A.J., Nakamura, T., Hammiche, A., Pollock, H.M., Martin, F.L., Kinoshita, S. and Fullwood, N.J. 2007. Characterization of human corneal stem cells by synchrotron infrared micro-spectroscopy. Mol. Vis., 22:237-42.
6. Bonnier, F., Rubin, S., Ventéo, L., Krishna, C.M., Pluot, M., Baehrel, B., Manfait, M. and Sockalingum, G.D. 2006. In-vitro analysis of normal and aneurismal human ascending aortic tissues using FTIR microspectroscopy. Biochim. Biophys. Acta., 1758:968-73.
7. Chiriboga, L., Xie, P., Yee, H., Vigorita, V., Zarou, D., Zakim, D. and Diem, M. 1998. Infrared spectroscopy of human tissue. I. Differentiation and maturation of epithelial cells in the human cervix. Biospectroscopy, 4:47-53.
8. Cohenford, M.A. and Rigas, B. 1998. Cytologically normal cells from neoplastic cervical samples display extensive structural abnormalities on IR. spectroscopy: implications for tumor biology. Proc. Natl. Acad. Sci., U.S.A. 95:15327-32.
9. Davey, E., Barratt, A., Irwig, L., Chan, S.F., Macaskill, P., Mannes, P. and Saville, A.M. 2006. Effect of study design and quality on unsatisfactory rates, cytology classifications, and accuracy in liquid-based versus conventional cervical cytology: a systematic review. Lancet, 367:122-32.
10. Fearn, T. 2002. Discriminant analysis, in: Chalmers, J. M. and Griffiths, P.R. (Eds.), Handbook of Vibrational Spectroscopy. Wiley, New York, 3:2086-93.
11. Fujioka, N., Morimoto, Y., Arai, T. and Kikuchi, M. 2004. Discrimination between normal and malignant human gastric tissues by Fourier transform infrared spectroscopy. Cancer Detect. Prev., 28:32-6.
12. Gazi, E., Dwyer, J., Gardner, P., Ghanbari-Siahkali, A., Wade, A.P., Miyan, J., Lockyer, N.P., Vickerman, J.C., Clarke, N.W., Shanks, J.H., Scott, L.J., Hart, C.A. and Brown, M. 2003. Applications of Fourier transform infrared microspectroscopy in studies of benign prostate and prostate cancer. A pilot study. J. Pathol., 201:99-108.
13. Gazi, E., Dwyer, J., Lockyer, N., Gardner, P., Vickerman, J.C., Miyan, J., Hart, C.A., Brown, M., Shanks, J.H. and Clarke, N. 2004. The combined application of FTIR microspectroscopy and ToF-SIMS imaging in the study of prostate cancer. Faraday Discuss., 126:41-59.
14. German, M.J., Hammiche, A., Ragavan, N., Tobin, M.J., Cooper, L.J., Matanhelia, S.S., Hindley, A.C., Nicholson, C.M., Fullwood, N.J., Pollock, H.M. and Martin, F.L. 2006a. Infrared spectroscopy with multivariate analysis potentially facilitates the segregation of different types of prostate cell. Biophys. J., 90:3783-95.
15. German, M.J., Pollock, H.M., Zhao, B., Tobin, M.J., Hammiche, A., Bentley, A., Cooper, L.J., Martin, F.L. and Fullwood, N.J. 2006b. Characterization of putative stem cell populations in the cornea using synchrotron infrared microspectroscopy. Invest Ophthalmol. Vis. Sci., 47:2417-21.
16. Goormaghtigh, E., Ruysschaert, J.M. and Raussens, V. 2006. Evaluation of the information content in infrared spectra for protein secondary structure determination. Biophys. J., 90:2946-57.
17. Hammiche, A., German, M.J., Hewitt, R., Pollock, H.M. and Martin, F.L. 2005. Monitoring cell cycle distributions in MCF-7 cells using nearfield photothermal microspectroscopy. Biophys. J., 88:3699-706.
18. Hammiche, A., Walsh, M.J., Pollock, H.M., Martin-Hirsch, P.L. and Martin, F.L. 2007. Non-contact micro-cantilevers detect photothermally induced vibrations that can segregate different categories of exfoliative cervical cytology. J. Biochem. Biophys. Methods, 70:675-7.
19. Karnon, J., Peters, J., Platt, J., Chilcott, J., McGoogan, E. and Brewer, N. 2004. Liquid-based cytology in cervical screening: an updated rapid and systematic review and economic analysis. Health Technol. Assess., 8:1-78.
20. Malins, D.C., Johnson, P.M., Barker, E.A., Polissar, N.L., Wheeler, T.M. and Anderson, K.M. 2003. Cancer-related changes in prostate DNA as men age and early identification of metastasis in primary prostate tumors. Proc. Natl. Acad. Sci., U.S.A. 100:5401-6.
21. Mantsch, H.H. and Chapman, D. 1996. Infrared spectroscopy of biomolecules. John Wiley and Sons, New York.
22. Martin, F.L., German, M.J., Wit, E., Fearn, T., Ragavan, N. and Pollock, H.M. 2007. Identifying variables responsible for clustering in discriminant analysis of data from infrared microspectroscopy of a biological sample. J. Comput. Biol., 14:1176-84; doi: 10.1089/ cmb.2007.0057.
23. Melnikow, J., Nuovo, J., Willian, A.R., Chan, B.K. and Howell, L.P. 1998. Natural history of cervical squamous intraepithelial lesions: a metaanalysis. Obstet. Gynecol., 92:727-35.
24. Ostor, A.G. 1993. Natural history of cervical intraepithelial neoplasia: a critical review. Int. J. Gynecol. Pathol., 12:186-92.
25. Quinn, M., Babb, P., Jones, J. and Allen, E. 1999. Effect of screening on incidence and mortality from cancer of the cervix in England: evaluation based on routinely collected statistics. Br. Med. J., 318:904-8.
26. Romeo, M.J., Wood, B.R. and McNaughton, D. 2002. Observing the cyclical changes in cervical epithelium using infrared microspectroscopy. Vib. Spectrosc., 28:167-75.
27. Tfayli, A., Piot, O., Durlach, A., Bernard, P. and Manfait, M. 2005. Discriminating nevus and melanoma on paraffin-embedded skin biopsies using FTIR microspectroscopy. Biochim. Biophys. Acta., 1724:262-9.
28. Tobin, M.J., Chesters, M.A., Chalmers, J.M., Rutten, F.J., Fisher, S.E., Symonds, I.M., Hitchcock, A., Allibone, R. and Dias-Gunasekara, S. 2004. Infrared microscopy of epithelial cells in whole tissues and in tissue culture, using synchrotron radiation. Faraday Discuss, 126:27-39.
29. Walsh, M.J., German, M.J., Singh, M., Pollock, H.M., Hammiche, A., Kyrgiou, M., Stringfellow, H.F., Paraskevaidis, E., Martin-Hirsch, P.L. and Martin, F.L. 2007a. IR microspectroscopy: potential applications in cervical cancer screening. Cancer Lett, 246:1-11.
30. Walsh, M.J., Singh, M.N., Pollock, H.M., Cooper, L.J., German, M.J., Stringfellow, H.F., Fullwood, N.J., Paraskevaidis, E., Martin-Hirsch, P.L. and Martin, F.L. 2007b. ATR microspectroscopy with multivariate analysis segregates grades of exfoliative cervical cytology. Biochem. Biophys. Res. Commun., 352:213-9.
31. 2 modifications as a marker of the putative stem cell region of human intestinal crypts. Stem Cells, 26:108-18. doi:10.1634/ stem-cells.2007-0196 [Online 27 September 2007].
32. Young, B. and Heath, J.W. 2001. Wheater's functional histology. 4th Ed., Churchill Livingstone.