Creating protein sequence patterns using efficient regular expressions in bioinformatics research

Proceedings of the International Conference on Information Technology Interfaces, ITI

Volumn , Issue , 2006, Pages 207-212

  Mulder, Michael ^a   Nezlek, George S ^a  

^a GRAND VALLEY STATE UNIVERSITY   (United States)

Author keywords

Algorithms; Bioinformatics; Programming languages; Protein sequencing; Regular expressions

Indexed keywords

ALGORITHMS; BIOINFORMATICS; COMPUTER PROGRAMMING LANGUAGES; DATABASE SYSTEMS;

PROTEIN SEQUENCING; REGULAR EXPRESSIONS;

PROTEINS;

EID: 41949085401     PISSN: 13301012     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/iti.2006.1708479     Document Type: Conference Paper

References (6)

1. Apweiler, R., T.k. Attwood, A. Bairoch, A. Bateman, E. Birney, and M. Biswas. "The InterPro database, an integrated documentation resource for protein families, domains and functional sites." Nucleic Acids Research 29 (2001): 37-40.
2. Fleischmann, Wolfgang, Steffen Moller, Alain Gateau, and Rolf Apweiler. "A novel method for automatic functional annotation of proteins." Bioinformatics 15 (1999): 228-233.
3. Freidl, Jeffrey E.F. Mastering Regular Expressions. 2nd ed. Sebastopol, CA: O'Reilly Media Inc., 2002.
4. Navarro, Gonzalo and Raffinot, Mathieu Flexible Pattern Matching in Strings Cambridge University Press, 2002.
5. "PROSITE - Database of protein families and domains." ExPASv. 21 Feb. 2006. SIB Switzerland. 25 Feb. 2006 〈http://www. expasy.ch/prosite/〉.
6. Sanger Institite: Pfam Protein Families Database in Bateman (et. al.) Nucleic Acids Research(2004) Database Issue 32:D138-D141. see also :〈http://www.sanger.ac.uk/Software/Pfam/help/scores.shtml〉