RNA editing in the anticodon of tRNALeu (CAA) occurs before group I intron splicing in plastids of a moss Takakia lepidozioides S. Hatt. & Inoue

Plant Biology

Volumn 10, Issue 2, 2008, Pages 250-255

  Miyata, Y ^a   Sugita, C ^a   Maruyama, K ^a   Sugita, M ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

C to U editing; Moss; Plastid; RNA editing; Takakia lepidozioides; tRNA Leu editing

Indexed keywords

LEUCINE TRANSFER RNA;

GENETIC ENGINEERING; MOSS; PLASTID; RNA;

ANTICODON; ARTICLE; BIOLOGICAL MODEL; GENETICS; INTRON; MOSS; NUCLEOTIDE SEQUENCE; PLASTID; RNA EDITING; RNA SPLICING;

ANTICODON; BASE SEQUENCE; BRYOPHYTA; INTRONS; MODELS, GENETIC; PLASTIDS; RNA EDITING; RNA SPLICING; RNA, TRANSFER, LEU;

BRYOPHYTA; EMBRYOPHYTA; TAKAKIA LEPIDOZIOIDES;

EID: 41849151743     PISSN: 14358603     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1438-8677.2007.00027.x     Document Type: Article

References (28)

1. Binder S., Marchfelder A., Brennicke A. (1994) RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules. Molecular and General Genetics, 244, 67 74.
2. Bock R. (2000) Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing. Biochimie, 82, 549 557.
3. Brennicke A., Marchfelder A., Binder S. (1999) RNA editing. FEMS Microbiology Reviews, 23, 297 316.
4. Burke J.M., Belfort M., Cech T.R., Davies R.W., Schweyen R.J., Shub D.A., Szostak J.W., Tabak H.F. (1987) Structural conventions for group I introns. Nucleic Acids Research, 15, 7217 7221.
5. Calsa T., Jr., Carraro D.M., Benatti M.R., Barbosa A.C., Kitajima J.P., Carrer H. (2004) Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome. Current Genetics, 46, 366 373.
6. Chaudhuri S., Maliga P. (1996) Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. The EMBO Journal, 15, 5052 5059.
7. Cox C.J., Goffinet B., Shaw A.J., Boles S.B. (2004) Phylogenetic relationships among the mosses based on heterogeneous Bayesian analysis of multiple genes from multiple genomic compartments. Systematic Botany, 29, 234 250.
8. Fey J., Weil J.H., Tomita K., Cosset A., Dietrich A., Small I., Maréchal-Drouard L. (2002) Role of editing in plant mitochondrial transfer RNAs. Gene, 286, 21 24.
9. Hirose T., Sugiura M. (2001) Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: development of a chloroplast in vitro RNA editing system. The EMBO Journal, 20, 1144 1152.
10. Kenrick P., Crane P.R. (1997) The origin and early evolution of plants on land. Nature, 389, 33 39.
11. Kugita M., Yamamoto Y., Fujikawa T., Matsumoto T., Yoshinaga K. (2003) RNA editing in hornwort chloroplasts makes more than half the genes functional. Nucleic Acids Research, 31, 2417 2423.
12. Li-Pook-Than J., Carrillo C., Niknejad N., Calixte S., Crosthwait J., Bonen L. (2007) Relationship between RNA splicing and exon editing near intron junctions in wheat mitochondria. Physiologia Plantarum, 129, 23 33.
13. Maréchal-Drouard L., Ramamonjisoa D., Cosset A., Weil J.H., Dietrich A. (1993) Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs. Nucleic Acids Research, 21, 4909 4914.
14. Maréchal-Drouard L., Kumar R., Remacle C., Small I. (1996) RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing. Nucleic Acids Research, 24, 3229 3234.
15. Miyata Y., Sugita M. (2004) Tissue- and stage-specific RNA editing of rps14 transcripts in moss (Physcomitrella patens) chloroplasts. Journal of Plant Physiology, 161, 113 115.
16. Newton A.E., Cox C.J., Duckett J.G., Wheeler J.A., Goffinet B., Hedderson T.A.J., Mishler B.D. (2000) Evolution of major moss lineage phylogenetic analyses based on multiple gene sequences and morphology. Bryologist, 103, 187 211.
17. Ohyama K., Fukuzawa H., Kohchi T., Shirai H., Sano T., Sano S., Umezono K., Shiki Y., Takeuchi M., Chang Z., Aota S., Inokuchi H., Ozeki H. (1986) Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature, 322, 572 574.
18. Qiu Y.-L., Li L., Wang B., Chen Z., Knoop V., Groth-Malonek M., Dombrovska O., Lee J., Kent L., Rest J., Estabrook G.F., Hendry T.A., Taylor D.W., Testa C.M., Ambros M., Crandall-Stotler B., Joel Duff R., Stech M., Frey W., Quandt D. (2006) The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences USA, 103, 15511 15516.
19. GAA region in bryophytes. Plant Biology, 6, 545 554.
20. Quandt D., Müller K., Stech M., Frey W., Hilu K.W., Borsch T. (2004) Molecular evolution of the chloroplast trnL-F region in land plants. In : Goffinet B., Hollowell V., Magill R. (Eds Molecular Systematics of Bryophytes. Monographs in Systematic Botany from the Missouri Botanical Garden, Missouri Botanical Garden, St. Louis, MO, 98 : 13 37.
21. Shaw J., Renzaglia K. (2004) Phylogeny and diversification of bryophytes. American Journal of Botany, 91, 1557 1581.
22. Shikanai T. (2006) RNA editing in plant organelles: machinery, physiological function and evolution. Cellular and Molecular Life Sciences, 63, 698 708.
23. Sugita M., Miyata Y., Maruyama K., Sugiura C., Arikawa T., Higuchi M. (2006) Extensive RNA editing in transcripts from the psbB operon and rpoA gene of plastids from the enigmatic moss Takakia lepidozioides. Bioscience, Biotechnology, and Biochemistry, 70, 2268 2274.
24. Sugiura C., Kobayashi Y., Aoki S., Sugita C., Sugita M. (2003) Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Research, 31, 5324 5331.
25. Sutton C.A., Conklin P.L., Pruitt K.D., Hanson M.R. (1991) Editing of pre-mRNAs can occur before cis- and trans-splicing in Petunia mitochondria. Molecular and Cellular Biology, 11, 4274 4277.
26. Wolf P.G., Rowe C.L., Sinclair R.B., Hasebe M. (2003) Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L. DNA Research, 10, 59 65.
27. Wolf P.G., Rowe C.L., Hasebe M. (2004) High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. Gene, 339, 89 97.
28. Zeng W.H., Liao S.C., Chang C.C. (2007) Identification of RNA editing sites in chloroplast transcripts of Phalaenopsis aphroditte and comparative analysis with those of other seed plants. Plant and Cell Physiology, 48, 362 368.