Reducing correlated noise in fMRI data

Magnetic Resonance in Medicine

Volumn 59, Issue 4, 2008, Pages 939-945

  De Zwart, Jacco A ^a   Van Gelderen, Peter ^a   Fukunaga, Masaki ^a   Duyn, Jeff H ^a  

^a NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE   (United States)

Author keywords

Filtering; fMRI; Noise reduction; Postprocessing; Regression analysis; Temporal signal correlation

Indexed keywords

BRAIN; FILTRATION; NOISE ABATEMENT; REGRESSION ANALYSIS; WHITE NOISE;

CORRELATED NOISE; FMRI; FUNCTIONAL MRI (FMRI); NEURONAL ACTIVATION; POSTPROCESSING; SENSITIVITY IMPROVEMENTS; TEMPORAL SIGNALS; TIME-SERIES DATA;

FUNCTIONAL NEUROIMAGING;

ADULT; ARTICLE; CELL ACTIVATION; DATA ANALYSIS; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN EXPERIMENT; MALE; MODEL; NERVE CELL; NOISE REDUCTION; NORMAL HUMAN; SCORING SYSTEM; SENSITIVITY ANALYSIS; SIGNAL NOISE RATIO; TIME SERIES ANALYSIS; VOLUNTEER;

EID: 41849149674     PISSN: 07403194     EISSN: 15222594     Source Type: Journal    
DOI: 10.1002/mrm.21507     Document Type: Article

References (20)

1. Ogawa S, Lee TM, Nayak AS, Glynn P. Oxygenation-sensitive contrast in magnetic resonance image of rodent brain at high magnetic fields. Magn Reson Med 1990;14:68-78.
2. Bartha R, Michaeli S, Merkle H, Adriany G, Andersen P, Chen W, Ugurbil K, Garwood M. In vivo 1H2O T2+ measurement in the human occipital lobe at 4T and 7T by Carr-Purcell MRI: detection of microscopic susceptibility contrast. Magn Reson Med 2002;47:742-750.
3. de Zwart JA, Ledden PJ, van Gelderen P, Bodurka J, Chu R, Duyn JH. Signal-to-noise ratio and parallel imaging performance of a 16-channel receive-only brain coil array at 3.0 Tesla. Magn Reson Med 2004;51:22-26.
4. Weisskoff RM. Simple measurement of scanner stability for functional NMR imaging of activation in the brain. Magn Reson Med 1996;36:643-645.
5. Heim S, Amunts K, Mohlberg H, Wilms M, Friedend AD. Head motion during overt language production in functional magnetic resonance imaging. Neuroreport 2006;17:579-582.
6. Thévenaz P, Ruttiman UE, Unser M. Iterative multi-scale registration without landmarks. IEEE International Conference on Image Processing. Washington, DC: IEEE; 1995. p 228-231.
7. Lee CC, Jack CR Jr, Grimm RC, Rossman PJ, Felmlee JP, Ehman RL, Riederer SJ. Real-time adaptive motion correction in functional MRI. Magn Reson Med 1996;36:436-444.
8. Glover GH, Li TQ, Ress D. Image-based method for retrospective correction of physiological motion effects in fMRI: RETROICOR. Magn Reson Med 2000;44:162-167.
9. Deckers RH, van Gelderen P, Ries M, Barret O, Duyn JH, Ikonomidou VN, Fukunaga M, Glover GH, de Zwart JA. An adaptive filter for suppression of cardiac and respiratory noise in MRI time series data. Neuroimage 2006;33:1072-1081.
10. Wise RG, Ide K, Poulin MJ, Tracey I. Resting fluctuations in arterial carbon dioxide induce significant low frequency variations in BOLD signal. Neuroimage 2004;21:1652-1664.
11. Friston KJ, Frith CD, Liddle PF, Frackowiak RS. Functional connectivity: the principal-component analysis of large (PET) datasets. J Cereb Blood Flow Metab 1993;13:5-14.
12. Bell AJ, Sejnowski TJ. An information-maximization approach to blind separation and blind deconvolution. Neural Comput 1995;7:1129-1159.
13. Fox MD, Snyder AZ, Zacks JM, Raichle ME. Coherent spontaneous activity accounts for trial-to-trial variability in human evoked brain responses. Nat Neurosci 2006;9:23-25.
14. de Zwart JA, van Gelderen P, Kellman P, Duyn JH. Application of sensitivity-encoded echo-planar imaging for blood oxygen level-dependent functional brain imaging. Magn Reson Med 2002;48:1011-1020.
15. Waldvogel D, van Gelderen P, Muellbacher W, Ziemann U, Immisch I, Hallett M, The relative metabolic demand of inhibition and excitation. Nature 2000;406:995-998.
16. Durbin J, Watson GS. Testing for serial correlation in least squares regression. III. Biometrika 1971;58:1-19.
17. Watson GS. Serial correlation in regression analysis. I. Biometrika 1955;42:327-341.
18. Woolrich MW, Ripley BD, Brady M, Smith SM. Temporal autocorrelation in univariate linear modeling of FMRI data. Neuroimage 2001;14:1370-1386.
19. Biswal B, Yetkin FZ, Haughton VM, Hyde JS. Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 1995;34:537-541.
20. Raichle ME, MacLeod AM, Snyder AZ, Powers WJ, Gusnard DA, Shulman GL. A default mode of brain function. Proc Natl Acad Sci USA 2001;98:676-682.