Diversity and distribution of indigenous soybean-nodulating rhizobia in the Okinawa islands, Japan

Soil Science and Plant Nutrition

Volumn 54, Issue 2, 2008, Pages 237-246

  Suzuki, Koutaro ^a   Oguro, Hiroko ^a   Yamakawa, Takeo ^b   Yamamoto, Akihiro ^a   Akao, Shoichiro ^a   Saeki, Yuichi ^a  

^a UNIVERSITY OF MIYAZAKI   (Japan)

^b KYUSHU UNIVERSITY   (Japan)

Author keywords

Bradyrhizobium; Okinawa; Rj soybean; Sinorhizobium; Soil pH

Indexed keywords

BRADYRHIZOBIUM; BRADYRHIZOBIUM ELKANII; GLYCINE MAX; RHIZOBIACEAE; SINORHIZOBIUM; SINORHIZOBIUM FREDII;

EID: 41749117277     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1111/j.1747-0765.2007.00236.x     Document Type: Article

References (30)

1. Ando S, Yokoyama T 1999 : Phylogenetic analyses of Bradyrhizobium strains nodulating soybean (Glycine max) in Thailand with reference to the USDA strains of Bradyrhizobium. Can. J. Microbiol., 45, 639 645.
2. Damirgi SM, Frederick LR, Anderson IC 1967 : Serogroups of Rhizobium japonicum in soybean nodules as affected by soil types. Agron. J., 59, 10 12.
3. Devine TE, Kuykendall LD 1996 : Host genetic control of symbiosis in soybean (Glycine max L.). Plant Soil, 186, 173 187.
4. Gross DC, Vidaver AK, Klucas RV 1979 : Plasmids, biological properties and efficacy of nitrogen fixation in Rhizobium japonicum strains indigenous to alkaline soils. J. Gen. Microbiol., 114, 257 266.
5. Ham GE, Frederick LR, Anderson IC 1971 : Serogroups of Rhizobium japonicum in soybean nodules sampled in Iowa. Agron. J., 63, 69 72.
6. Hiraishi A, Inagaki K, Tanimoto Y, Iwasaki M, Kishimoto N, Tanaka H 1997 : Phylogenetic characterization of a new thermoacidophilic bacterium isolated from hot springs in Japan. J. Gen. Appl. Microbiol., 43, 295 304.
7. Ishizuka J, Suemasu Y, Mizogami K 1991 : Preference of Rj-soybean cultivars for Bradyrhizobium japonicum for nodulation. Soil Sci. Plant Nutr., 37, 15 21.
8. Kaneko T, Nakamura Y, Sato S et al. 2002 : Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA 110. DNA Res., 9, 189 197.
9. Keyser HH, Bohlool BB, Hu TS, Weber DF 1982 : Fast-growing rhizobia isolated from root nodules of soybean. Science, 215, 1631 1632.
10. + antiport systems in alkaliphilic Bacillus sp. strain C-125. J. Bacteriol., 176, 6464 6469.
11. Kowalski M, Ham GE, Frederick LR, Anderson IC 1974 : Relationship between strains of Rhizobium japonicum and their bacteriophages from soil and nodules of field-grown soybeans. Soil Sci., 118, 221 228.
12. Minamisawa K, Nakatsuka T, Isawa T 1999 : Diversity and field site variation of indigenous populations of soybean bradyrhizobia in Japan by fingerprints with repeated sequences RSα and RSβ. FEMS Microbiol. Ecol., 29, 171 178.
13. Mylona P, Pawlowski K, Bisseling T 1995 : Symbiotic nitrogen fixation. Plant Cell, 7, 869 885.
14. Nei M, Li WH 1979 : Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl Acad. Sci. USA, 79, 5269 5273.
15. Padan E, Bibi E, Ito M, Krulwich TA 2005 : Alkaline pH homeostasis in bacteria: new insights. Biochim. Biophys. Acta., 1717, 67 88.
16. + efflux system. Mol. Microbiol., 28, 1091 1101.
17. Saeki Y, Aimi N, Hashimoto M et al. 2004 : Grouping of Bradyrhizobium USDA strains by sequence analysis of 16S rDNA and 16S-23S rDNA internal transcribed spacer region. Soil Sci. Plant Nutr., 50, 517 525.
18. Saeki Y, Aimi N, Tsukamoto S, Yamakawa T, Nagatomo Y, Akao S 2006 : Diversity and geographical distribution of indigenous soybean-nodulating bradyrhizobia in Japan. Soil Sci. Plant Nutr., 52, 418 426.
19. Saeki Y, Akagi I, Takaki H, Nagatomo Y 2000 : Diversity of indigenous Bradyrhizobium strains isolated from three different Rj-soybean cultivars in terms of randomly amplified polymorphic DNA and intrinsic antibiotic resistance. Soil Sci. Plant Nutr., 46, 917 926.
20. Saeki Y, Kaneko A, Hara T et al. 2005 : Phylogenetic analysis of soybean-nodulating rhizobia isolated from alkaline soils in Vietnam. Soil Sci. Plant Nutr., 51, 1043 1052.
21. Sakai M, Futamata H, Kim J-S, Matsuguchi T 1998 : Effect of soil salinity on population structure of fluorescent pseudomonads in spinach rhizosphere. Soil Sci. Plant Nutr., 44, 701 705.
22. Saldana G, Martinez-Alcantara V, Vinardell JM, Bellogin R, Ruiz-Sainz JE, Balatti PA 2003 : Genetic diversity of fast-growing rhizobia that nodulate soybean (Glycine max L. Merr). Arch. Microbiol., 180, 45 52.
23. Sameshima R, Isawa T, Sadowsky MJ et al. 2003 : Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSα, RSβ and IS1631. FEMS Microbiol. Ecol., 44, 191 202.
24. Sawada Y, Miyashita K, Tanabe I, Kato K 1989 : Hup phenotype and serogroup identity of soybean nodulating bacteria isolated from Japanese soils. Soil Sci. Plant Nutr., 35, 281 288.
25. van Berkum P, Fuhrmann JJ 2000 : Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int. J. Syst. Bacteriol., 50, 2165 2172.
26. Vincent JM 1970 : A Manual for the Practical Study of the Root-Nodule Bacteria. International Biological Program, Blackwell Scientific, Oxford.
27. Weisburg WG, Barm SM, Pelletier DA, Lane DJ 1991 : 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol., 173, 697 703.
28. Willems A, Coopman R, Gillis M 2001 : Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species. Int. J. Syst. Bacteriol., 51, 111 117.
29. Yokoyama T, Ando S, Murakami T, Imai H 1996 : Genetic variability of the common nod gene in soybean bradyrhizobia isolated in Thailand and Japan. Can. J. Microbiol., 42, 1209 1218.
30. Young JP 1996 : Phylogeny and taxonomy of rhizobia. Plant Soil, 186, 45 52.