Mapping QTLs with epistatic effects and QTL × environment interactions for plant height using a doubled haploid population in cultivated wheat

Journal of Genetics and Genomics

Volumn 35, Issue 2, 2008, Pages 119-127

  Zhang, Kunpu ^a   Tian, Jichun ^a   Zhao, Liang ^a   Wang, Shanshan ^a  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

doubled haploid population; epistatic effects; plant height; QTL environment interactions; quantitative trait loci; wheat (Triticum aestivum L.)

Indexed keywords

ARTICLE; COMPUTER MODEL; COMPUTER PROGRAM; ENVIRONMENTAL FACTOR; GENE; GENE CONSTRUCT; GENE LOCATION; GENE MAPPING; GENETIC EPISTASIS; GENETIC LINKAGE; GENETIC MARKER; GENOTYPE ENVIRONMENT INTERACTION; HAPLOIDY; NONHUMAN; PHENOTYPIC VARIATION; PLANT CHROMOSOME; PLANT GENETICS; PLANT HEIGHT; QUANTITATIVE TRAIT LOCUS; RHT1 GENE; RHT2 GENE; TILLAGE; WHEAT;

BREEDING; ENVIRONMENT; EPISTASIS, GENETIC; HAPLOIDY; LINEAR MODELS; LINKAGE (GENETICS); PHENOTYPE; QUANTITATIVE TRAIT LOCI; SOFTWARE; TRITICUM;

TRITICUM AESTIVUM;

EID: 41749100374     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(08)60017-X     Document Type: Article

References (42)

1. Börner A., Schumann E., Furste A., Coster H., Leithold B., Röder M.S., and Weber W.E. Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat (Triticum aestivum L.). Theor. Appl. Genet. 105 (2002) 921-936
2. Cadalen T., Sourdille P., Charmet G., Tixier M.H., Gay G., Boeuf C., Bernard S., Leroy P., and Bernard M. Molecular markers linked to genes affecting plant height in wheat using a double haploid population. Theor. Appl. Genet. 96 (1998) 933-940
3. Cao G., Zhu J., He C., Gao Y., Yan J., and Wu P. Impact of epistasis and QTL×environment interaction on the developmental behavior of plant height in rice (Oryza sativa L.). Theor. Appl. Genet. 103 (2001) 153-160
4. Chen J.F., Ren Z.L., Gao L.F., and Jia J.Z. Developing new SSR markers from EST of wheat. Acta. Agro. Sic. 31 (2005) 154-158
5. Doerge R.W. Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations. Nat. Rev. 3 (2002) 43-52
6. Dudley J.W., Lamkey K.R., and Geadelmann J.L. Evaluation of populations for their potential to improve three maize hybrids. Crop Sci. 36 (1996) 1553-1559
7. In: Evans L.T. (Ed). Crop evolution, adaptation, and yield (1993), Cambridge University Press, Cambridge
8. Ellis M.H., Rebetzke G.J., Chandler P., Bonnett D., Spielmeyer W., and Richards R.A. The effect of different height reducing genes on early growth characteristics of wheat. Funct. Plant Biol. 31 (2004) 583-589
9. Ellis M.H., Rebetzke G.J., Azanza F., Richards R.A., and Spielmeyer W. Molecular mapping of gibberellin responsive dwarfing genes in bread wheat. Theor. Appl. Genet. 111 (2005) 423-430
10. Guo C.Q., Bai Z.A., Liao P.A., and Jin W.K. New high quality and yield wheat variety Yumai 57. China Seed Industry 4 (2004) 54
11. Gupta P.K., Balyan H.S., Edwards K.J., Isaac P., Korzun V., and Röder M. Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat. Theor. Appl. Genet. 105 (2002) 413-422
12. Hai Y., and Kang M.H. Breeding of a new wheat variety Huapei 3 with high yield and early maturing. Henan Agri. Sci. 5 (2007) 36-37
13. Huang X.Q., Cloutier S., Lycar L., Radovanovic N., Humphreys D.G., Noll J.S., Somers D.J., and Brown P.D. Molecular detection of QTLs for agronomic and quality traits in a doubled haploid population derived from two Canadian wheats (Triticum aestivum L.). Theor. Appl. Genet. 113 (2006) 753-766
14. Hua J.P., Xing Y.Z., Xu C.G., Sun X.L., Yu S.B., and Zhang Q.F. Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics 162 (2002) 1885-1895
15. Huang X.Q., Coster H., Ganal M.W., and Röder M.S. Advanced backcross QTL analysis for the identification of quantitative trait loci alleles from wild relatives of wheat (Triticum aestivum L.). Theor. Appl. Genet. 106 (2003) 1379-1389
16. Ji Y., Miao M.M., and Chen X.H. Progress on the molucular genetics of dwarf character in plants. Mol. Plant Breed. 6 (2006) 753-771
17. Karakousis A., Gustafson J.P., Chalmers K.J., Barr A.R., and Langridge P. A consensus map of barley integrating SSR, RFLP, and AFLP markers. Aust. J. Agric. Res. 54 (2003) 1173-1185
18. Keller M., Karutz C.H., Schmid J.E., Stamp P., Winzeler M., Keller B., and Messmer M.M. Quantitative trait loci for lodging resistance in a segregating wheat×spelt population. Theor. Appl. Genet. 98 (1999) 1171-1182
19. Konzak, C.F. (Ed.) (1988). Genetic analysis, genetic improvement and evaluation of induced semi-dwarf mutants in wheat. Semidwarf cereal mutants and their use in cross-breeding III research coordination meeting, 16-20 December 1985. International Atomic Energy Agency, Vienna, Austria pp. 39-50.
20. Korzun V., Röder M.S., Worland A.J., and Borner A. Intra-chromosomal mapping of genes for dwarfing (Rht12) and vernalization response (Vrn1) in wheat by using RFLP and microsatellite markers. Plant Breed. 116 (1997) 227-232
21. Korzun V., Röder M.S., Ganal M.W., Worland A.J., and Law C.N. Genetic analysis of the dwarfing gene (Rht8) in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 96 (1998) 1104-1109
22. Kosambi D.D. The estimation of map distances from recombination values. Ann. Eugen. 12 (1944) 172-175
23. Lincoln S.E., Daly M.J., and Lander E.S. Constructing genetic maps with MAPMAKER/EXP version 3.0: A tutorial and reference manual. Whitehead Inst Biomed Res Tech Rpt. 3rd edn. (1993), Whitehead Institute for Biomedical Research, Cambridge 97
24. 2:3 population. Acta Genet. Sin. 29 (2002) 706-711
25. Liu G.F., Yang J., and Zhu J. Mapping QTL for biomass yield and its components in rice (Oryza sativa L.). Acta Genet. Sin. 33 (2006) 607-616
26. Ma W., Appels R., Bekes F., Larroque O., Morell M.K., and Gale K.R. Genetic characterisation of dough rheological properties in a wheat doubled haploid population: additive genetic effects and epistatic interactions. Theor. Appl. Genet. 111 (2005) 410-422
27. Ma X.Q., Tang J.H., Teng W.T., Yan J.B., Meng Y.J., and Li J.S. Epistatic interaction is an important genetic basis of grain yield and its components in maize. Mol. Breed. 20 (2007) 41-51
28. Marion, S., Röder, Huang, X.Q., and Börner, A. Fine mapping of the region on wheat chromosome 7D controlling grain weight. Funct. Integr. Genomics (in press).
29. Mei H.W., Luo L.J., Ying C.S., Wang Y.P., Yu X.Q., Guo L.B., Paterson A.H., and Li Z.K. Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations. Theor. Appl. Genet. 107 (2003) 89-101
30. Mei H.W., Luo L.J., Ying C.S., Wang Y.P., Yu X.Q., Guo L.B., Paterson A.H., and Li Z.K. Gene actions of QTL affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross population. Theor. Appl. Genet. 110 (2005) 649-659
31. Pestsova E., Ganal M.W., and Röder M.S. Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43 (2000) 689-697
32. Rebetzke G.J., Ellis M.H., Bonnett D.G., and Richards R.A. Molecular mapping of genes for Coleoptile growth in bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 114 (2007) 1173-1183
33. Rebetzke G.J., Richards R.A., Fischer V.M., and Mickelson B.J. Breeding long coleoptile, reduced height wheats. Euphytica 106 (1999) 159-168
34. Röder M.S., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P., and Ganal M.W. A microsatellite map of wheat. Genetics 149 (1998) 2007-2023
35. Sears E.R. The aneuploids of common wheat. Univ. M. Res. Bull. 572 (1954) 1-58
36. Somers D.J., Isaac P., and Edwards K. A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor. Appl. Genet. 109 (2004) 1105-1114
37. Torada A., Koike M., Mochida K., and Ogihara Y. SSR-based linkage map with new markers using an intraspecific population of common wheat. Theor. Appl. Genet. 112 (2006) 1042-1051
38. Voorrips R.E. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93 (2002) 77-78
39. Wang B.H., Guo W.Z., Zhu X.F., Wu Y.T., Huang N.T., and Zhang T.Z. QTL Mapping of yield and yield components for elite hybrid derived-RILs in upland cotton. J. Genet. Genomics 34 (2007) 35-45
40. Wang D.L., Zhu J., Li Z.K., and Paterson A.H. Mapping QTLs with epistatic effects and QTL×environment interactions by mixed linear model approaches. Theor. Appl. Genet. 99 (1999) 1255-1264
41. Xi Z.Y., and Zhang G.Q. SSR marker and its application in crop genetics and breeding. J. Henan Agric. Univ. 36 (2002) 293-297
42. Yang J., and Zhu J. Predicting superior genotypes in multiple environments based on QTL effects. Theor. Appl. Genet. 110 (2005) 1268-1274