A benchmark for protein dynamics: Ribonuclease A measured by neutron scattering in a large wavevector-energy transfer range

Chemical Physics

Volumn 345, Issue 2-3, 2008, Pages 305-314

  Wood, Kathleen ^a,b   Caronna, Chiara ^c,d   Fouquet, Peter ^a   Haussler, Wolfgang ^e   Natali, Francesca ^a   Ollivier, Jacques ^a   Orecchini, Andrea ^f,g   Plazanet, Marie ^g,h   Zaccai, Giuseppe ^a  

^a INSTITUT LAUE LANGEVIN   (France)

^b MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

^d UNIVERSITY OF PALERMO   (Italy)

^e TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^f UNIVERSITY OF PERUGIA   (Italy)

^g SAPIENZA UNIVERSITY OF ROME   (Italy)

^h UNIVERSITY OF FLORENCE   (Italy)

Author keywords

Boson peak; Dynamical transition; Generalised density of states; Global protein diffusion; Mean square displacements; Methyl group rotation; Protein dynamics; Quasi elastic neutron scattering; Ribonuclease A

Indexed keywords

EID: 41649101321     PISSN: 03010104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemphys.2007.09.012     Document Type: Article

References (43)

1. Libonati M., and Gotte G. Biochem. J. 380 (2004) 311
2. Dyer K.D., and Rosenberg H.F. Mol. Divers. 10 (2006) 585
3. Ribo M., Font J., Benito A., Torrent J., Lange R., and Vilanova M. Biochim. Biophys. Acta 1764 (2006) 461
4. Rico M., Santoro J., Gonzalez C., Bruix M., Neira J.L., Nieto J.L., and Herranz J. J. Biomol. NMR 1 (1991) 283
5. Santoro J., Gonzalez C., Bruix M., Neira J.L., Nieto J.L., Herranz J., and Rico M. J. Mol. Biol. 229 (1993) 722
6. Wlodawer A., Svensson L.A., Sjolin L., and Gilliland G.L. Biochemistry 27 (1988) 2705
7. Wlodawer A., and Sjolin L. Biochemistry 22 (1983) 2720
8. Rasmussen B.F., Stock A.M., Ringe D., and Petsko G.A. Nature 357 (1992) 423
9. W.L. DeLano, The pymol molecular graphics system, , 1996.
10. Doster W., Cusack S., and Petry W. Nature 337 (1989) 754
11. Ferrand M., Dianoux A.J., Petry W., and Zaccai G. Proc. Natl. Acad. Sci. USA 90 (1993) 1034
12. Fitter J. Biophys. J. 76 (1999) 1034
13. Gabel F., Bicout D., Lehnert U., Tehei M., Weik M., and Zaccai G. Q. Rev. Biophys. 35 (2002) 327
14. LAMP, The large array manipulation program, , 2002.
15. WaveMetrics, Igor Pro 5.0.1.0, 1988-2004.
16. Zaccai G. Science 288 (2000) 1604
17. Bicout D.J., and Zaccai G. Biophys. J. 80 (2001) 1115
18. Egelstaff P.A., and Schofield P. Nucl. Sci. Eng. 12 (1962) 260
19. Dianoux A.J. Phil. Mag. B 58 (1989) 17
20. Ferrand M., Dianoux A.J., Petry W., and Zaccai G. Proc. Natl. Acad. Sci. USA 90 (1993) 9668
21. Reat V., Patzelt H., Ferrand M., Pfister C., Oesterhelt D., and Zaccai G. Proc. Natl. Acad. Sci. USA 95 (1998) 4970
22. Roh J.H., Novikov V.N., Gregory R.B., Curtis J.E., Chowdhuri Z., and Sokolov A.P. Phys. Rev. Lett. 95 (2005) 038101
23. Doster W., and Settles M. Biochim. Biophys. Acta 1749 (2005) 173
24. Gabel F. Eur. Biophys. J. 34 (2005) 1
25. Diehl M., Doster W., Petry W., and Schober H. Biophys. J. 73 (1997) 2726
26. Taraskin S.N., Loh Y.L., Natarajan G., and Elliott S.R. Phys. Rev. Lett. 86 (2001) 1255
27. Schirmacher W., Diezemann G., and Ganter C. Phys. Rev. Lett. 81 (1998) 136
28. Tarek M., and Tobias D.J. J. Chem. Phys. 115 (2001) 1607
29. Settles M., and Doster W. In: Cusack S., Buttner H., Ferrand M., Langan P., and Timmins P. (Eds). Biological Macromolecular Dynamics (1997), Adenine Press, Schenectady, NY 3
30. Becker T., Hayward J.A., Finney J.L., Daniel R.M., and Smith J.C. Biophys. J. 87 (2004) 1436
31. Keniry M.A., Kintanar A., Smith R.L., Gutowsky H.S., and Oldfield E. Biochemistry 23 (1984) 288
32. Bee M., Djurado D., Combet J., and Gonzalez M.A. Chem. Phys. 277 (2002) 211
33. Fitter J., Lechner R.E., Buldt G., and Dencher N.A. Proc. Natl. Acad. Sci. USA 93 (1996) 7600
34. Daniel R.M., Smith J.C., Ferrand M., Hery S., Dunn R., and Finney J.L. Biophys. J. 75 (1998) 2504
35. Tarek M., and Tobias D. In: Fitter J., Gutberlet T., and Katsaras J. (Eds). Neutron scattering in biology (2006), Springer 531
36. Hardy R.C., and Cottington R. J. Chem. Phys. 17 (1949) 509
37. Sasisanker P., Oleinikova A., Weingartner H., Ravindra R., and Winter R. Phys. Chem. Chem. Phys. 6 (2004) 1899
38. Tehei M., Franzetti B., Madern D., Ginzburg M., Ginzburg B.Z., Giudici-Orticoni M.T., Bruschi M., and Zaccai G. EMBO Rep. 5 (2004) 66
39. Tehei M., Madern D., Franzetti B., and Zaccai G. J. Biol. Chem. 280 (2005) 40974
40. Tehei M., Madern D., Pfister C., and Zaccai G. Proc. Natl. Acad. Sci. USA 98 (2001) 14356
41. Zaccai G., Tehei M., Scherbakova I., Serdyuk I., Gerez C., and Pfister C. J. Phys. IV 10 (2000) 283
42. Tarek M., Martyna G.J., and Tobias D.J. J. Am. Chem. Soc. 122 (2000) 10450
43. Curtis J.E., Tarek M., and Tobias D.J. J. Am. Chem. Soc. 126 (2004) 15928