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Volumn 17, Issue 4, 2008, Pages 623-632

Analysis of solvent content and oligomeric states in protein crystals - Does symmetry matter?

Author keywords

Matthews coefficient; Oligomerization; Protein crystals; Solvent content; Space group frequency

Indexed keywords

ARTICLE; CRYSTAL STRUCTURE; CRYSTALLIZATION; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE;

EID: 41649093175     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.073360508     Document Type: Article
Times cited : (53)

References (34)
  • 1
    • 0030038464 scopus 로고    scopus 로고
    • Methods used in the structure determination of bovine mitochondrial F1 ATPase
    • Abrahams, J.P. and Leslie, A.G. 1996. Methods used in the structure determination of bovine mitochondrial F1 ATPase. Acta Crystallogr. D Biol Crystallogr. 52: 30-42.
    • (1996) Acta Crystallogr. D Biol Crystallogr , vol.52 , pp. 30-42
    • Abrahams, J.P.1    Leslie, A.G.2
  • 2
    • 0001752768 scopus 로고    scopus 로고
    • The Cambridge Structural Database: A quarter of a million crystal structures and rising
    • Allen, F.H. 2002. The Cambridge Structural Database: A quarter of a million crystal structures and rising. Acta Crystallogr. B 58: 380-388.
    • (2002) Acta Crystallogr. B , vol.58 , pp. 380-388
    • Allen, F.H.1
  • 3
    • 12944333197 scopus 로고    scopus 로고
    • The protein content in crystals and packing coefficients in different space groups
    • Andersson, K.M. and Hovmöller, S. 2000. The protein content in crystals and packing coefficients in different space groups. Acta Crystallogr. D Biol Crystallogr. 56: 789-790.
    • (2000) Acta Crystallogr. D Biol Crystallogr , vol.56 , pp. 789-790
    • Andersson, K.M.1    Hovmöller, S.2
  • 5
    • 84920874288 scopus 로고
    • The perils of Cc - comparing the frequencies of falsely assigned space groups with their general population
    • Baur, W.H. and Kassner, D. 1992. The perils of Cc - comparing the frequencies of falsely assigned space groups with their general population. Acta Crystallogr. B 48: 356-369.
    • (1992) Acta Crystallogr. B , vol.48 , pp. 356-369
    • Baur, W.H.1    Kassner, D.2
  • 6
    • 0001874888 scopus 로고
    • How to avoid unnecessarily low symmetry in crystal-structure determinations
    • Baur, W.H. and Tillmanns, E. 1986. How to avoid unnecessarily low symmetry in crystal-structure determinations. Acta Crystallogr. B 42: 95-111.
    • (1986) Acta Crystallogr. B , vol.42 , pp. 95-111
    • Baur, W.H.1    Tillmanns, E.2
  • 8
    • 0000293986 scopus 로고    scopus 로고
    • Investigations of the systematics of crystal packing using the Cambridge Structural Database
    • Brock, C.P. 1996. Investigations of the systematics of crystal packing using the Cambridge Structural Database. J. Res. Natl. Inst. Stand. Technol. 101: 321-325.
    • (1996) J. Res. Natl. Inst. Stand. Technol , vol.101 , pp. 321-325
    • Brock, C.P.1
  • 9
    • 0007621236 scopus 로고
    • A quantitative analysis of the relative importance of symmetry operators in organic molecular crystals
    • Filippini, G. and Gavezzotti, A. 1992. A quantitative analysis of the relative importance of symmetry operators in organic molecular crystals. Acta Crystallogr. B 48: 230-234.
    • (1992) Acta Crystallogr. B , vol.48 , pp. 230-234
    • Filippini, G.1    Gavezzotti, A.2
  • 10
    • 0026095584 scopus 로고
    • Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
    • Hendrickson, W.A. 1991. Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science 254: 51-58.
    • (1991) Science , vol.254 , pp. 51-58
    • Hendrickson, W.A.1
  • 11
    • 0025262173 scopus 로고
    • Selenomethionyl proteins produced for analysis by multi-wavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
    • Hendrickson, W.A., Horton, J.R., and LeMaster, D.M. 1990. Selenomethionyl proteins produced for analysis by multi-wavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure. EMBO J. 9: 1665-1672.
    • (1990) EMBO J , vol.9 , pp. 1665-1672
    • Hendrickson, W.A.1    Horton, J.R.2    LeMaster, D.M.3
  • 12
    • 0346838080 scopus 로고    scopus 로고
    • More space-group corrections: From triclinic to centred monoclinic and to rhombohedral; also from P1 to P-1 and from Cc to C2/c
    • Herbstein, F.H. and Marsh, R.E. 1998. More space-group corrections: From triclinic to centred monoclinic and to rhombohedral; also from P1 to P-1 and from Cc to C2/c. Acta Crystallogr. B 54: 677-686.
    • (1998) Acta Crystallogr. B , vol.54 , pp. 677-686
    • Herbstein, F.H.1    Marsh, R.E.2
  • 13
    • 0031829372 scopus 로고    scopus 로고
    • Removing near-neighbour redundancy from large protein sequence collections
    • Holm, L. and Sander, C. 1998. Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics 14: 423-429.
    • (1998) Bioinformatics , vol.14 , pp. 423-429
    • Holm, L.1    Sander, C.2
  • 14
    • 0042011224 scopus 로고    scopus 로고
    • Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals
    • Kantardjieff, K.A. and Rupp, B. 2003. Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals. Protein Sci. 12: 1865-1871.
    • (2003) Protein Sci , vol.12 , pp. 1865-1871
    • Kantardjieff, K.A.1    Rupp, B.2
  • 17
    • 84944815706 scopus 로고
    • A reciprocal-space method for calculating a molecular envelope using the algorithm of Wang, B.C
    • Leslie, A.G.W. 1987. A reciprocal-space method for calculating a molecular envelope using the algorithm of Wang, B.C. Acta Crystallogr. A 43: 134-136.
    • (1987) Acta Crystallogr. A , vol.43 , pp. 134-136
    • Leslie, A.G.W.1
  • 18
    • 0035072551 scopus 로고    scopus 로고
    • Clustering of highly homologous sequences to reduce the size of large protein databases
    • Li, W., Jaroszewski, L., and Godzik, A. 2001. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics 17: 282-283.
    • (2001) Bioinformatics , vol.17 , pp. 282-283
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 19
    • 0001118230 scopus 로고
    • Some thoughts on choosing the correct space group
    • Marsh, R.E. 1995. Some thoughts on choosing the correct space group. Acta Crystallogr. B 51: 897-907.
    • (1995) Acta Crystallogr. B , vol.51 , pp. 897-907
    • Marsh, R.E.1
  • 20
    • 0042914358 scopus 로고    scopus 로고
    • The space groups of point group C3: Some corrections, some comments
    • Marsh, R.E. 2002. The space groups of point group C3: Some corrections, some comments. Acta Crystallogr. B 58: 893-899.
    • (2002) Acta Crystallogr. B , vol.58 , pp. 893-899
    • Marsh, R.E.1
  • 22
    • 0038214379 scopus 로고    scopus 로고
    • Use of software to search for higher symmetry: Space group C2
    • Marsh, R.E. and Spek, A.L. 2001. Use of software to search for higher symmetry: Space group C2. Acta Crystallogr. B 57: 800-805.
    • (2001) Acta Crystallogr. B , vol.57 , pp. 800-805
    • Marsh, R.E.1    Spek, A.L.2
  • 24
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews, B.W. 1968. Solvent content of protein crystals. J. Mol. Biol. 33: 491-497.
    • (1968) J. Mol. Biol , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 26
    • 84919227524 scopus 로고
    • Space-group frequencies of proteins and of organic compounds with more than one formula unit in the asymmetric unit
    • Padmaja, N., Ramakumar, S., and Viswamitra, M.A. 1990. Space-group frequencies of proteins and of organic compounds with more than one formula unit in the asymmetric unit. Acta Crystallogr. A 46: 725-730.
    • (1990) Acta Crystallogr. A , vol.46 , pp. 725-730
    • Padmaja, N.1    Ramakumar, S.2    Viswamitra, M.A.3
  • 27
    • 0030855024 scopus 로고    scopus 로고
    • Simulation of protein crystal nucleation
    • Pellegrini, M., Wukovitz, S.W., and Yeates, T.O. 1997. Simulation of protein crystal nucleation. Proteins 28: 515-521.
    • (1997) Proteins , vol.28 , pp. 515-521
    • Pellegrini, M.1    Wukovitz, S.W.2    Yeates, T.O.3
  • 28
    • 2442699301 scopus 로고    scopus 로고
    • A database survey of molecular and crystallographic symmetry
    • Pidcock, E., Motherwell, W.D.S., and Cole, J.C. 2003. A database survey of molecular and crystallographic symmetry. Acta Crystallogr. B 59: 634-640.
    • (2003) Acta Crystallogr. B , vol.59 , pp. 634-640
    • Pidcock, E.1    Motherwell, W.D.S.2    Cole, J.C.3
  • 29
    • 0141669302 scopus 로고    scopus 로고
    • Automatic inference of protein quaternary structure from crystals
    • Ponstingl, H., Kabir, T., and Thornton, J.M. 2003. Automatic inference of protein quaternary structure from crystals. J. Appl. Crystallogr. 36: 1116-1122.
    • (2003) J. Appl. Crystallogr , vol.36 , pp. 1116-1122
    • Ponstingl, H.1    Kabir, T.2    Thornton, J.M.3
  • 30
    • 0000072771 scopus 로고    scopus 로고
    • Frequency of Z′ values in organic and organometallic crystal structures
    • Steiner, T. 2000. Frequency of Z′ values in organic and organometallic crystal structures. Acta Crystallogr. B 56: 673-676.
    • (2000) Acta Crystallogr. B , vol.56 , pp. 673-676
    • Steiner, T.1
  • 31
    • 0022325950 scopus 로고
    • Resolution of phase ambiguity in macromolecular crystallography
    • Wang, B.C. 1985. Resolution of phase ambiguity in macromolecular crystallography. Methods Enzymol. 115: 90-112.
    • (1985) Methods Enzymol , vol.115 , pp. 90-112
    • Wang, B.C.1
  • 32
    • 84944815567 scopus 로고
    • Space groups rare for organic structures. 1. Triclinic, monoclinic and orthorhombic crystal classes
    • Wilson, A.J.C. 1988. Space groups rare for organic structures. 1. Triclinic, monoclinic and orthorhombic crystal classes. Acta Crystallogr. B 44: 715-724.
    • (1988) Acta Crystallogr. B , vol.44 , pp. 715-724
    • Wilson, A.J.C.1
  • 33
    • 84945085967 scopus 로고
    • Kitajgorodskij categories
    • Wilson, A.J.C. 1993. Kitajgorodskij categories. Acta Crystallogr. B 49: 210-212.
    • (1993) Acta Crystallogr. B , vol.49 , pp. 210-212
    • Wilson, A.J.C.1
  • 34
    • 0028787430 scopus 로고
    • Why protein crystals favour some space groups over others
    • Wukovitz, S.W. and Yeates, T.O. 1995. Why protein crystals favour some space groups over others. Nat. Struct. Biol. 2: 1062-1067.
    • (1995) Nat. Struct. Biol , vol.2 , pp. 1062-1067
    • Wukovitz, S.W.1    Yeates, T.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.