-
1
-
-
33751111173
-
Text mining and its potential applications in systems biology
-
10.1016/j.tibtech.2006.10.002 17045684
-
Ananiadou S Kell DB Tsujii J Text mining and its potential applications in systems biology Trends Biotechnol 2006 24 571-579 10.1016/ j.tibtech.2006.10.002 17045684
-
(2006)
Trends Biotechnol
, vol.24
, pp. 571-579
-
-
Ananiadou, S.1
Kell, D.B.2
Tsujii, J.3
-
2
-
-
31144432293
-
Literature mining for the biologist: From information retrieval to biological discovery
-
10.1038/nrg1768 16418747
-
Jensen LJ Saric J Bork P Literature mining for the biologist: From information retrieval to biological discovery Nat Rev Genet 2006 7 119-129 10.1038/nrg1768 16418747
-
(2006)
Nat Rev Genet
, vol.7
, pp. 119-129
-
-
Jensen, L.J.1
Saric, J.2
Bork, P.3
-
3
-
-
41549130556
-
Named Entity Recognition
-
London, Artech House Books Ananiadou S and McNaught J
-
Park JC Kim J Named Entity Recognition Text Mining for Biology and Biomedicine London, Artech House Books Ananiadou S and McNaught J 2006 121-142
-
(2006)
Text Mining for Biology and Biomedicine
, pp. 121-142
-
-
Park, J.C.1
Kim, J.2
-
5
-
-
0031633368
-
Toward information extraction: Identifying protein names from biological papers
-
9697224
-
Fukuda K Tamura A Tsunoda T Takagi T Toward information extraction: identifying protein names from biological papers Pac Symp Biocomput 1998 707-718 9697224
-
(1998)
Pac Symp Biocomput
, pp. 707-718
-
-
Fukuda, K.1
Tamura, A.2
Tsunoda, T.3
Takagi, T.4
-
6
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
10.1093/bioinformatics/18.8.1124 12176836
-
Tanabe L Wilbur WJ Tagging gene and protein names in biomedical text Bioinformatics 2002 18 1124-1132 10.1093/bioinformatics/18.8.1124 12176836
-
(2002)
Bioinformatics
, vol.18
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, W.J.2
-
7
-
-
1042269470
-
GAPSCORE: Finding gene and protein names one word at a time
-
10.1093/bioinformatics/btg393 14734313
-
Chang JT Schutze H Altman RB GAPSCORE: Finding gene and protein names one word at a time Bioinformatics 2004 20 216-225 10.1093/bioinformatics/ btg393 14734313
-
(2004)
Bioinformatics
, vol.20
, pp. 216-225
-
-
Chang, J.T.1
Schutze, H.2
Altman, R.B.3
-
8
-
-
33947305118
-
Identifying gene and protein mentions in text using conditional random fields
-
1869020 15960840 10.1186/1471-2105-6-S1-S6
-
McDonald R Pereira F Identifying gene and protein mentions in text using conditional random fields BMC Bioinformatics 2005 6 Suppl 1: S6 1869020 15960840 10.1186/1471-2105-6-S1-S6
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
McDonald, R.1
Pereira, F.2
-
9
-
-
25144520247
-
ABNER: An open source tool for automatically tagging genes, proteins and other entity names in text
-
10.1093/bioinformatics/bti475 15860559
-
Settles B ABNER: An open source tool for automatically tagging genes, proteins and other entity names in text Bioinformatics 2005 21 3191-3192 10.1093/bioinformatics/bti475 15860559
-
(2005)
Bioinformatics
, vol.21
, pp. 3191-3192
-
-
Settles, B.1
-
10
-
-
33947307025
-
Recognition of protein/gene names from text using an ensemble of classifiers
-
1869021 15960841 10.1186/1471-2105-6-S1-S7
-
Zhou G Shen D Zhang J Su J Tan S Recognition of protein/gene names from text using an ensemble of classifiers BMC Bioinformatics 2005 6 Suppl 1: S7 1869021 15960841 10.1186/1471-2105-6-S1-S7
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Zhou, G.1
Shen, D.2
Zhang, J.3
Su, J.4
Tan, S.5
-
11
-
-
0034707204
-
Using BLAST for identifying gene and protein names in journal articles
-
10.1016/S0378-1119(00)00431-5 11163982
-
Krauthammer M Rzhetsky A Morozov P Friedman C Using BLAST for identifying gene and protein names in journal articles Gene 2000 259 245-252 10.1016/S0378-1119(00)00431-5 11163982
-
(2000)
Gene
, vol.259
, pp. 245-252
-
-
Krauthammer, M.1
Rzhetsky, A.2
Morozov, P.3
Friedman, C.4
-
12
-
-
0036854484
-
Finding relevant references to genes and proteins in Medline using a Bayesian approach
-
10.1093/bioinformatics/18.11.1515 12424124
-
Leonard JE Colombe JB Levy JL Finding relevant references to genes and proteins in Medline using a Bayesian approach Bioinformatics 2002 18 1515-1522 10.1093/bioinformatics/18.11.1515 12424124
-
(2002)
Bioinformatics
, vol.18
, pp. 1515-1522
-
-
Leonard, J.E.1
Colombe, J.B.2
Levy, J.L.3
-
13
-
-
33947317767
-
Exploring the boundaries: Gene and protein identification in biomedical text
-
1869019 15960839 10.1186/1471-2105-6-S1-S5
-
Finkel J Dingare S Manning CD Nissim M Alex B Grover C Exploring the boundaries: Gene and protein identification in biomedical text BMC Bioinformatics 2005 6 Suppl 1: S5 1869019 15960839 10.1186/ 1471-2105-6-S1-S5
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Finkel, J.1
Dingare, S.2
Manning, C.D.3
Nissim, M.4
Alex, B.5
Grover, C.6
-
14
-
-
33947373992
-
A simple approach for protein name identification: Prospects and limits
-
1869007 15960827 10.1186/1471-2105-6-S1-S15
-
Fundel K Guttler D Zimmer R Apostolakis J A simple approach for protein name identification: Prospects and limits BMC Bioinformatics 2005 6 Suppl 1: S15 1869007 15960827 10.1186/1471-2105-6-S1-S15
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Fundel, K.1
Guttler, D.2
Zimmer, R.3
Apostolakis, J.4
-
15
-
-
33947258447
-
ProMiner: Rule-based protein and gene entity recognition
-
1869006 15960826 10.1186/1471-2105-6-S1-S14
-
Hanisch D Fundel K Mevissen HT Zimmer R Fluck J ProMiner: Rule-based protein and gene entity recognition BMC Bioinformatics 2005 6 Suppl 1: S14 1869006 15960826 10.1186/1471-2105-6-S1-S14
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Hanisch, D.1
Fundel, K.2
Mevissen, H.T.3
Zimmer, R.4
Fluck, J.5
-
16
-
-
33947315795
-
Automatically annotating documents with normalized gene lists
-
1771968 15960825 10.1186/1471-2105-6-S1-S13
-
Crim J McDonald R Pereira F Automatically annotating documents with normalized gene lists BMC Bioinformatics 2005 6 Suppl 1: S13 1771968 15960825 10.1186/1471-2105-6-S1-S13
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Crim, J.1
McDonald, R.2
Pereira, F.3
-
17
-
-
9544222527
-
Protein names precisely peeled off free text
-
10.1093/bioinformatics/bth904 15262805
-
Mika S Rost B Protein names precisely peeled off free text Bioinformatics 2004 20 Suppl 1 I241-I247 10.1093/bioinformatics/bth904 15262805
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Mika, S.1
Rost, B.2
-
18
-
-
1542400018
-
Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors
-
10.1093/bioinformatics/btg449 14990452
-
Horn F Lau AL Cohen FE Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors Bioinformatics 2004 20 557 568 10.1093/ bioinformatics/btg449 14990452
-
(2004)
Bioinformatics
, vol.20
, pp. 557-568
-
-
Horn, F.1
Lau, A.L.2
Cohen, F.E.3
-
20
-
-
10244245027
-
An entity tagger for recognizing acquired genomic variations in cancer literature
-
10.1093/bioinformatics/bth350 15180929
-
McDonald RT Winters RS Mandel M Jin Y White PS Pereira F An entity tagger for recognizing acquired genomic variations in cancer literature Bioinformatics 2004 20 3249-3251 10.1093/bioinformatics/bth350 15180929
-
(2004)
Bioinformatics
, vol.20
, pp. 3249-3251
-
-
McDonald, R.T.1
Winters, R.S.2
Mandel, M.3
Jin, Y.4
White, P.S.5
Pereira, F.6
-
21
-
-
33749853613
-
OSIRIS: A tool for retrieving literature about sequence variants
-
10.1093/bioinformatics/btl421 16882651
-
Bonis J Furlong LI Sanz F OSIRIS: A tool for retrieving literature about sequence variants Bioinformatics 2006 22 2567-2569 10.1093/ bioinformatics/btl421 16882651
-
(2006)
Bioinformatics
, vol.22
, pp. 2567-2569
-
-
Bonis, J.1
Furlong, L.I.2
Sanz, F.3
-
22
-
-
84886766344
-
-
PubMed http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
-
PubMed
-
-
-
23
-
-
84871717384
-
-
Entrez Gene http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene
-
Entrez Gene
-
-
-
24
-
-
84886762348
-
-
dbSNP http://www.ncbi.nlm.nih.gov/SNP/
-
DbSNP
-
-
-
25
-
-
84886759081
-
-
OSIRISv1.2 http://ibi.imim.es/OSIRISv1.2.html
-
OSIRISv1.2
-
-
-
26
-
-
34248366694
-
Corpora and their Annotation
-
46 Gillingham Street, London SW1V 1AH UK, Artech House Ananiadou S and McNaught J
-
Kim JD Tsujii J Corpora and their Annotation. Text Mining for Biology and Biomedicine 46 Gillingham Street, London SW1V 1AH UK, Artech House Ananiadou S and McNaught J 2006 179-211
-
(2006)
Text Mining for Biology and Biomedicine
, pp. 179-211
-
-
Kim, J.D.1
Tsujii, J.2
-
27
-
-
0031984850
-
Prevalence and Risk of Rupture of Intracranial Aneurysms: A Systematic Review
-
9445359
-
Rinkel GJE Djibuti M Algra A van Gijn J Prevalence and Risk of Rupture of Intracranial Aneurysms: A Systematic Review Stroke 1998 29 251-256 9445359
-
(1998)
Stroke
, vol.29
, pp. 251-256
-
-
Rinkel, G.J.E.1
Djibuti, M.2
Algra, A.3
van Gijn, J.4
-
28
-
-
33745893564
-
The genetics of intracranial aneurysms
-
16736093 10.1007/s10038-006-0407-4 16736093
-
Krischek B Inoue I The genetics of intracranial aneurysms J Hum Genet 2006 51 7 587-594 16736093 10.1007/s10038-006-0407-4 16736093
-
(2006)
J Hum Genet
, vol.51
, pp. 587-594
-
-
Krischek, B.1
Inoue, I.2
-
30
-
-
0242525539
-
Endothelial nitric oxide synthase T-786C single nucleotide polymorphism: A putative genetic marker differentiating small versus large ruptured intracranial aneurysms
-
10.1161/01.STR.0000096994.53810.59 14576373
-
Khurana VG Sohni YR Mangrum WI McClelland RL O'Kane DJ Meyer FB Meissner I Endothelial nitric oxide synthase T-786C single nucleotide polymorphism: A putative genetic marker differentiating small versus large ruptured intracranial aneurysms Stroke 2003 34 2555-2559 10.1161/ 01.STR.0000096994.53810.59 14576373
-
(2003)
Stroke
, vol.34
, pp. 2555-2559
-
-
Khurana, V.G.1
Sohni, Y.R.2
Mangrum, W.I.3
McClelland, R.L.4
O'Kane, D.J.5
Meyer, F.B.6
Meissner, I.7
-
31
-
-
1542347120
-
Endothelial nitric oxide synthase gene polymorphisms predict susceptibility to aneurysmal subarachnoid hemorrhage and cerebral vasospasm
-
10.1097/01.WCB.0000110540.96047.C7 15091109
-
Khurana VG Sohni YR Mangrum WI McClelland RL O'Kane DJ Meyer FB Meissner I Endothelial nitric oxide synthase gene polymorphisms predict susceptibility to aneurysmal subarachnoid hemorrhage and cerebral vasospasm J Cereb Blood Flow Metab 2004 24 291-297 10.1097/ 01.WCB.0000110540.96047.C7 15091109
-
(2004)
J Cereb Blood Flow Metab
, vol.24
, pp. 291-297
-
-
Khurana, V.G.1
Sohni, Y.R.2
Mangrum, W.I.3
McClelland, R.L.4
O'Kane, D.J.5
Meyer, F.B.6
Meissner, I.7
-
32
-
-
13844299488
-
Influence of endothelial nitric oxide synthase T-786C single nucleotide polymorphism on aneurysm size
-
15658098
-
Akagawa H Kasuya H Onda H Yoneyama T Sasahara A Kim CJ Lee JC Yang TK Hori T Inoue I Influence of endothelial nitric oxide synthase T-786C single nucleotide polymorphism on aneurysm size J Neurosurg 2005 102 68-71 15658098
-
(2005)
J Neurosurg
, vol.102
, pp. 68-71
-
-
Akagawa, H.1
Kasuya, H.2
Onda, H.3
Yoneyama, T.4
Sasahara, A.5
Kim, C.J.6
Lee, J.C.7
Yang, T.K.8
Hori, T.9
Inoue, I.10
-
34
-
-
31844454121
-
Deficiencies in estrogen-mediated regulation of cerebrovascular homeostasis may contribute to an increased risk of cerebral aneurysm pathogenesis and rupture in menopausal and postmenopausal women
-
10.1016/j.mehy.2005.09.051 16356655
-
Harrod CG Batjer HH Bendok BR Deficiencies in estrogen-mediated regulation of cerebrovascular homeostasis may contribute to an increased risk of cerebral aneurysm pathogenesis and rupture in menopausal and postmenopausal women Med Hypotheses 2006 66 736-756 10.1016/ j.mehy.2005.09.051 16356655
-
(2006)
Med Hypotheses
, vol.66
, pp. 736-756
-
-
Harrod, C.G.1
Batjer, H.H.2
Bendok, B.R.3
-
35
-
-
33750903351
-
Endothelial nitric oxide synthase gene polymorphisms and cardiovascular disease: A HuGE review
-
10.1093/aje/kwj302 10.1093/aje/kwj302 17018701
-
Casas JP Cavalleri GL Bautista LE Smeeth L Humphries SE Hingorani AD Endothelial nitric oxide synthase gene polymorphisms and cardiovascular disease: A HuGE review Am J Epidemiol 2006 164 921-935 10.1093/aje/ kwj302 17018701
-
(2006)
Am J Epidemiol
, vol.164
, pp. 921-935
-
-
Casas, J.P.1
Cavalleri, G.L.2
Bautista, L.E.3
Smeeth, L.4
Humphries, S.E.5
Hingorani, A.D.6
-
36
-
-
33947304181
-
Overview of BioCreAtIvE: Critical assessment of information extraction for biology
-
1869002 15960821 10.1186/1471-2105-6-S1-S1
-
Hirschman L Yeh A Blaschke C Valencia A Overview of BioCreAtIvE: critical assessment of information extraction for biology BMC Bioinformatics 2005 6 Suppl 1: S1 1869002 15960821 10.1186/ 1471-2105-6-S1-S1
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Hirschman, L.1
Yeh, A.2
Blaschke, C.3
Valencia, A.4
-
37
-
-
37849034558
-
ProMiner: Recognition of Human Gene and Protein names using regularly updated dictionaries
-
Centro Nacional de Investigaciones Oncologicas Hirschman L, Krallinger M and Valencia A
-
Fluck J Mevissen HT Dach H Oster M Hofmann-Apitius M ProMiner: Recognition of Human Gene and Protein names using regularly updated dictionaries Proceedings of the Second BioCreative Challenge Workshop Centro Nacional de Investigaciones Oncologicas Hirschman L, Krallinger M and Valencia A 2007 149-151
-
(2007)
Proceedings of the Second BioCreative Challenge Workshop
, pp. 149-151
-
-
Fluck, J.1
Mevissen, H.T.2
Dach, H.3
Oster, M.4
Hofmann-Apitius, M.5
-
38
-
-
84886767641
-
-
Swiss-Prot http://ca.expasy.org/sprot/
-
Swiss-Prot
-
-
-
41
-
-
0742321913
-
Mining the biomedical literature in the genomic era: An overview
-
10.1089/106652703322756104 14980013
-
Shatkay H Feldman R Mining the biomedical literature in the genomic era: an overview J Comput Biol 2003 10 8210855 10.1089/106652703322756104 14980013
-
(2003)
J Comput Biol
, vol.10
, pp. 821-855
-
-
Shatkay, H.1
Feldman, R.2
-
42
-
-
4944229711
-
GENIA corpus -- A semantically annotated corpus for bio-textmining10.1093/bioinformatics/btg1023
-
10.1093/bioinformatics/btg1023 12855455
-
Kim JD Ohta T Tateisi Y Tsujii J GENIA corpus -- A semantically annotated corpus for bio-textmining10.1093/bioinformatics/btg1023 Bioinformatics 2003 19 i180-182 10.1093/bioinformatics/btg1023 12855455
-
(2003)
Bioinformatics
, vol.19
-
-
Kim, J.D.1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.4
-
43
-
-
33846115034
-
Integrated Annotation for Biomedical Information Extraction
-
Kulick S Bies A Liberman M Mandel M McDonald R Palmer M Schein A Ungar L Integrated Annotation for Biomedical Information Extraction HLT-NAACL Workshop: Biolink 2004, Linking Biological Literature, Ontologies and Databases 2004 61-68
-
(2004)
HLT-NAACL Workshop: Biolink 2004, Linking Biological Literature, Ontologies and Databases
, pp. 61-68
-
-
Kulick, S.1
Bies, A.2
Liberman, M.3
Mandel, M.4
McDonald, R.5
Palmer, M.6
Schein, A.7
Ungar, L.8
-
45
-
-
84886765355
-
-
Vex editor http://vex.sourceforge.net/
-
Vex Editor
-
-
|