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Volumn 8, Issue 6, 2008, Pages 1212-1220

Systematic interpretation of cyclic nucleotide binding studies using KinetXBase

Author keywords

Biomolecular interaction analysis; cAMP dependent protein kinase; Database; Functional proteomics; PKA

Indexed keywords

CYCLIC AMP; CYCLIC AMP DEPENDENT PROTEIN KINASE; CYCLIC NUCLEOTIDE;

EID: 41549106218     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700731     Document Type: Article
Times cited : (9)

References (42)
  • 1
    • 0034644509 scopus 로고    scopus 로고
    • Signaling networks: The origins of cellular multitasking
    • Jordan, J. D., Landau, E. M., Iyengar, R., Signaling networks: The origins of cellular multitasking. Cell 2000, 103, 193-200.
    • (2000) Cell , vol.103 , pp. 193-200
    • Jordan, J.D.1    Landau, E.M.2    Iyengar, R.3
  • 2
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin, A. C., Bosche, M., Krause, R., Grandi, P. et al., Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415, 141-147.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1    Bosche, M.2    Krause, R.3    Grandi, P.4
  • 3
    • 0036200945 scopus 로고    scopus 로고
    • Molecular biologist's guide to proteomics
    • table of contents
    • Graves, P. R., Haystead, T. A., Molecular biologist's guide to proteomics. Microbiol. Mol. Biol. Rev. 2002, 66, 39-63; table of contents.
    • (2002) Microbiol. Mol. Biol. Rev , vol.66 , pp. 39-63
    • Graves, P.R.1    Haystead, T.A.2
  • 4
    • 14844307038 scopus 로고    scopus 로고
    • Protein kinase A as a therapeutic target for memory disorders: Rationale and challenges
    • Arnsten, A. F., Ramos, B. P., Birnbaum, S. G., Taylor, J. R., Protein kinase A as a therapeutic target for memory disorders: Rationale and challenges. Trends Mol. Med. 2005, 11, 121-128.
    • (2005) Trends Mol. Med , vol.11 , pp. 121-128
    • Arnsten, A.F.1    Ramos, B.P.2    Birnbaum, S.G.3    Taylor, J.R.4
  • 7
    • 0020770086 scopus 로고
    • Isolation of a cDNA clone for the type I regulatory subunit of bovine cAMP-dependent protein kinase
    • Lee, D. C., Carmichael, D. F., Krebs, E. G., McKnight, G. S., Isolation of a cDNA clone for the type I regulatory subunit of bovine cAMP-dependent protein kinase. Proc. Natl. Acad. Sci. USA 1983, 80, 3608-3612.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 3608-3612
    • Lee, D.C.1    Carmichael, D.F.2    Krebs, E.G.3    McKnight, G.S.4
  • 8
    • 0011564219 scopus 로고
    • Genetic characterization of a brain-specific form of the type I regulatory subunit of cAMP-dependent protein kinase
    • Clegg, C. H., Cadd, G. G., McKnight, G. S., Genetic characterization of a brain-specific form of the type I regulatory subunit of cAMP-dependent protein kinase. Proc. Natl. Acad. Sci. USA 1988, 85, 3703-3707.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3703-3707
    • Clegg, C.H.1    Cadd, G.G.2    McKnight, G.S.3
  • 9
    • 0023388024 scopus 로고
    • The molecular cloning of a type II regulatory subunit of the cAMP-dependent protein kinase from rat skeletal muscle and mouse brain
    • Scott, J. D., Glaccum, M. B., Zoller, M. J., Uhler, M. D. et al., The molecular cloning of a type II regulatory subunit of the cAMP-dependent protein kinase from rat skeletal muscle and mouse brain. Proc. Natl. Acad. Sci. USA 1987, 84, 5192-5196.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 5192-5196
    • Scott, J.D.1    Glaccum, M.B.2    Zoller, M.J.3    Uhler, M.D.4
  • 10
    • 0022966782 scopus 로고
    • Molecular cloning, cDNA structure, and regulation of the regulatory subunit of type II cAMP-dependent protein kinase from rat ovarian granulosa cells
    • Jahnsen, T., Hedin, L., Kidd, V. J., Beattie, W. G. et al., Molecular cloning, cDNA structure, and regulation of the regulatory subunit of type II cAMP-dependent protein kinase from rat ovarian granulosa cells. J. Biol. Chem. 1986, 261, 12352-12361.
    • (1986) J. Biol. Chem , vol.261 , pp. 12352-12361
    • Jahnsen, T.1    Hedin, L.2    Kidd, V.J.3    Beattie, W.G.4
  • 11
    • 0015217645 scopus 로고
    • Purification and characterization of a protein inhibitor of adenosine 3′,5′-monophosphate-dependent protein kinases
    • Walsh, D. A., Ashby, C. D., Gonzalez, C., Calkins, D. et al., Purification and characterization of a protein inhibitor of adenosine 3′,5′-monophosphate-dependent protein kinases. J. Biol. Chem. 1971, 246, 1977-1985.
    • (1971) J. Biol. Chem , vol.246 , pp. 1977-1985
    • Walsh, D.A.1    Ashby, C.D.2    Gonzalez, C.3    Calkins, D.4
  • 12
    • 33746099330 scopus 로고    scopus 로고
    • Biomolecular interaction analysis in functional proteomics
    • Moll, D., Prinz, A., Gesellchen, F., Drewianka, S. et al., Biomolecular interaction analysis in functional proteomics. J. Neural. Transm. 2006, 113, 1015-1032.
    • (2006) J. Neural. Transm , vol.113 , pp. 1015-1032
    • Moll, D.1    Prinz, A.2    Gesellchen, F.3    Drewianka, S.4
  • 13
    • 0033930882 scopus 로고    scopus 로고
    • BIND - a data specification for storing and describing biomolecular interactions, molecular complexes and pathways
    • Bader, G. D., Hogue, C. W., BIND - a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 2000, 16, 465-477.
    • (2000) Bioinformatics , vol.16 , pp. 465-477
    • Bader, G.D.1    Hogue, C.W.2
  • 16
    • 0034666108 scopus 로고    scopus 로고
    • A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
    • STRING
    • Snel, B., Lehmann, G., Bork, P., Huynen, M. A., STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res. 2000, 28, 3442-3444.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3442-3444
    • Snel, B.1    Lehmann, G.2    Bork, P.3    Huynen, M.A.4
  • 17
    • 0037250152 scopus 로고    scopus 로고
    • A database of predicted functional associations between proteins
    • STRING
    • von Mering, C., Huynen, M., Jaeggi, D., Schmidt, S. et al., STRING: A database of predicted functional associations between proteins. Nucleic Acids Res. 2003, 31, 258-261.
    • (2003) Nucleic Acids Res , vol.31 , pp. 258-261
    • von Mering, C.1    Huynen, M.2    Jaeggi, D.3    Schmidt, S.4
  • 18
    • 3943087720 scopus 로고    scopus 로고
    • Analyzing cellular biochemistry in terms of molecular networks
    • Xia, Y., Yu, H., Jansen, R., Seringhaus, M. et al., Analyzing cellular biochemistry in terms of molecular networks. Annu. Rev. Biochem. 2004, 73, 1051-1087.
    • (2004) Annu. Rev. Biochem , vol.73 , pp. 1051-1087
    • Xia, Y.1    Yu, H.2    Jansen, R.3    Seringhaus, M.4
  • 19
    • 0023026198 scopus 로고
    • Expression of the type I regulatory subunit of cAMP-dependent protein kinase in Escherichia coli
    • Saraswat, L. D., Filutowicz, M., Taylor, S. S., Expression of the type I regulatory subunit of cAMP-dependent protein kinase in Escherichia coli. J. Biol. Chem. 1986, 261, 11091-11096.
    • (1986) J. Biol. Chem , vol.261 , pp. 11091-11096
    • Saraswat, L.D.1    Filutowicz, M.2    Taylor, S.S.3
  • 20
    • 33846611526 scopus 로고    scopus 로고
    • Comparative thermodynamic analysis of cyclic nucleotide binding to Protein Kinase A
    • Moll, D., Schweinsberg, S., Hammann, C., Herberg, F. W., Comparative thermodynamic analysis of cyclic nucleotide binding to Protein Kinase A. Biol. Chem. 2007, 388, 163-172.
    • (2007) Biol. Chem , vol.388 , pp. 163-172
    • Moll, D.1    Schweinsberg, S.2    Hammann, C.3    Herberg, F.W.4
  • 21
    • 0038612495 scopus 로고    scopus 로고
    • Applications of biomolecular interaction analysis in drug development
    • Zimmermann, B., Hahnefeld, C., Herberg, F. W., Applications of biomolecular interaction analysis in drug development. TARGETS 2002, 1, 66-73.
    • (2002) TARGETS , vol.1 , pp. 66-73
    • Zimmermann, B.1    Hahnefeld, C.2    Herberg, F.W.3
  • 22
    • 0020724928 scopus 로고
    • Mapping of the two intrachain cyclic nucleotide binding sites of adenosine cyclic 3′,5′-phosphate dependent protein kinase I
    • Døskeland, S. O., Øgreid, D., Ekanger, R., Sturm, P. A. et al., Mapping of the two intrachain cyclic nucleotide binding sites of adenosine cyclic 3′,5′-phosphate dependent protein kinase I. Biochemistry 1983, 22, 1094-1101.
    • (1983) Biochemistry , vol.22 , pp. 1094-1101
    • Døskeland, S.O.1    Øgreid, D.2    Ekanger, R.3    Sturm, P.A.4
  • 23
    • 0023684675 scopus 로고
    • Ammonium sulfate precipitation assay for the study of cyclic nucleotide binding to proteins
    • Doskeland, S. O., Øgreid, D., Ammonium sulfate precipitation assay for the study of cyclic nucleotide binding to proteins. Meth. Enzymol. 1988, 159, 147-150.
    • (1988) Meth. Enzymol , vol.159 , pp. 147-150
    • Doskeland, S.O.1    Øgreid, D.2
  • 24
    • 0034254510 scopus 로고    scopus 로고
    • 8-Substituted cAMP analogues reveal marked differences in adaptability, hydrogen bonding, and charge accommodation between homologous binding sites (AI/AII and BI/BII) in cAMP kinase I and II
    • Schwede, F., Christensen, A., Liauw, S., Hippe, T. et al., 8-Substituted cAMP analogues reveal marked differences in adaptability, hydrogen bonding, and charge accommodation between homologous binding sites (AI/AII and BI/BII) in cAMP kinase I and II. Biochemistry 2000, 39, 8803-8812.
    • (2000) Biochemistry , vol.39 , pp. 8803-8812
    • Schwede, F.1    Christensen, A.2    Liauw, S.3    Hippe, T.4
  • 25
    • 0033801452 scopus 로고    scopus 로고
    • Cyclic nucleotide analogs as biochemical tools and prospective drugs
    • Schwede, F., Maronde, E., Genieser, H., Jastorff, B., Cyclic nucleotide analogs as biochemical tools and prospective drugs. Pharmacol. Ther. 2000, 87, 199-226.
    • (2000) Pharmacol. Ther , vol.87 , pp. 199-226
    • Schwede, F.1    Maronde, E.2    Genieser, H.3    Jastorff, B.4
  • 26
    • 0742323374 scopus 로고    scopus 로고
    • The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data
    • Hermjakob, H., Montecchi-Palazzi, L., Bader, G., Wojcik, J. et al., The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat. Biotechnol. 2004, 22, 177-183.
    • (2004) Nat. Biotechnol , vol.22 , pp. 177-183
    • Hermjakob, H.1    Montecchi-Palazzi, L.2    Bader, G.3    Wojcik, J.4
  • 28
    • 0020579741 scopus 로고
    • Cyclic nucleotides modulate the release of [3H] adenosine cyclic 3′,5′-phosphate bound to the regulatory moiety of protein kinase I by the catalytic subunit of the kinase
    • Ogreid, D., Døskeland, S. O., Cyclic nucleotides modulate the release of [3H] adenosine cyclic 3′,5′-phosphate bound to the regulatory moiety of protein kinase I by the catalytic subunit of the kinase. Biochemistry 1983, 22, 1686-1696.
    • (1983) Biochemistry , vol.22 , pp. 1686-1696
    • Ogreid, D.1    Døskeland, S.O.2
  • 29
    • 0017884532 scopus 로고
    • An adenosine 3′,5′- monophosphate-adenosine binding protein from mouse liver. A study on its interaction with adenosine 3′,5′-monophosphate and adenosine
    • Ueland, P. M., Døskeland, S. O., An adenosine 3′,5′- monophosphate-adenosine binding protein from mouse liver. A study on its interaction with adenosine 3′,5′-monophosphate and adenosine. J. Biol. Chem. 1978, 253, 1667-1676.
    • (1978) J. Biol. Chem , vol.253 , pp. 1667-1676
    • Ueland, P.M.1    Døskeland, S.O.2
  • 30
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • Wiseman, T., Williston, S., Brandts, J. F., Lin, L. N., Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 1989, 179, 131-137.
    • (1989) Anal. Biochem , vol.179 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.N.4
  • 31
    • 33645313112 scopus 로고    scopus 로고
    • Two peas, one pod
    • CNG and HCN channels
    • Craven, K. B., Zagotta, W. N., CNG and HCN channels: Two peas, one pod. Annu. Rev. Physiol. 2006, 68, 375-401.
    • (2006) Annu. Rev. Physiol , vol.68 , pp. 375-401
    • Craven, K.B.1    Zagotta, W.N.2
  • 32
    • 34447265905 scopus 로고    scopus 로고
    • Biochemistry and physiology of cyclic nucleotide phosphodiesterases: Essential components in cyclic nucleotide signaling
    • Conti, M., Beavo, J., Biochemistry and physiology of cyclic nucleotide phosphodiesterases: Essential components in cyclic nucleotide signaling. Annu. Rev. Biochem. 2007, 76, 481-511.
    • (2007) Annu. Rev. Biochem , vol.76 , pp. 481-511
    • Conti, M.1    Beavo, J.2
  • 33
    • 33847068206 scopus 로고    scopus 로고
    • Overview of PDEs and their regulation
    • Omori, K., Kotera, J., Overview of PDEs and their regulation. Circ. Res. 2007, 100, 309-327.
    • (2007) Circ. Res , vol.100 , pp. 309-327
    • Omori, K.1    Kotera, J.2
  • 34
    • 0242468744 scopus 로고    scopus 로고
    • Regulation and organization of adenylyl cyclases and cAMP
    • Cooper, D. M., Regulation and organization of adenylyl cyclases and cAMP. J. Biochem. 2003, 375, 517-529.
    • (2003) J. Biochem , vol.375 , pp. 517-529
    • Cooper, D.M.1
  • 35
    • 0033637126 scopus 로고    scopus 로고
    • Genetic and pharmacological demonstration of differential recruitment of cAMP-dependent protein kinases by synaptic activity
    • Woo, N. H., Duffy, S. N., Abel, T., Nguyen, P. V., Genetic and pharmacological demonstration of differential recruitment of cAMP-dependent protein kinases by synaptic activity. J. Neurophysiol. 2000, 84, 2739-2745.
    • (2000) J. Neurophysiol , vol.84 , pp. 2739-2745
    • Woo, N.H.1    Duffy, S.N.2    Abel, T.3    Nguyen, P.V.4
  • 36
    • 0037277999 scopus 로고    scopus 로고
    • Temporal spacing of synaptic stimulation critically modulates the dependence of LTP on cyclic AMP-dependent protein kinase
    • Woo, N. H., Duffy, S. N., Abel, T., Nguyen, P. V., Temporal spacing of synaptic stimulation critically modulates the dependence of LTP on cyclic AMP-dependent protein kinase. Hippocampus 2003, 13, 293-300.
    • (2003) Hippocampus , vol.13 , pp. 293-300
    • Woo, N.H.1    Duffy, S.N.2    Abel, T.3    Nguyen, P.V.4
  • 37
    • 0029021176 scopus 로고
    • Hippocampal long-term depression and depotentiation are defective in mice carrying a targeted disruption of the gene encoding the RI beta subunit of cAMP-dependent protein kinase
    • Brandon, E. P., Zhuo, M., Huang, Y. Y., Qi, M. et al., Hippocampal long-term depression and depotentiation are defective in mice carrying a targeted disruption of the gene encoding the RI beta subunit of cAMP-dependent protein kinase. Proc. Natl. Acad. Sci. USA 1995, 92, 8851-8855.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 8851-8855
    • Brandon, E.P.1    Zhuo, M.2    Huang, Y.Y.3    Qi, M.4
  • 38
    • 13344279399 scopus 로고
    • A genetic test of the effects of mutations in PKA on mossy fiber LTP and its relation to spatial and contextual learning
    • Huang, Y. Y., Kandel, E. R., Varshavsky, L., Brandon, E. P. et al., A genetic test of the effects of mutations in PKA on mossy fiber LTP and its relation to spatial and contextual learning. Cell 1995, 83, 1211-1222.
    • (1995) Cell , vol.83 , pp. 1211-1222
    • Huang, Y.Y.1    Kandel, E.R.2    Varshavsky, L.3    Brandon, E.P.4
  • 39
    • 2542523982 scopus 로고    scopus 로고
    • Crystal structures of RIalpha subunit of cyclic adenosine 5′-monophosphate (cAMP)-dependent protein kinase complexed with (R(p))-adenosine 3′,5′-cyclic monophosphothioate and (S(p))-adenosine 3′,5′-cyclic monophosphothioate, the phosphothioate analogues of cAMP
    • Wu, J., Jones, J. M., Xuong, N. H., Eyck, L. F., Taylor, S. S., Crystal structures of RIalpha subunit of cyclic adenosine 5′-monophosphate (cAMP)-dependent protein kinase complexed with (R(p))-adenosine 3′,5′-cyclic monophosphothioate and (S(p))-adenosine 3′,5′-cyclic monophosphothioate, the phosphothioate analogues of cAMP. Biochemistry 2004, 43, 6620-6629.
    • (2004) Biochemistry , vol.43 , pp. 6620-6629
    • Wu, J.1    Jones, J.M.2    Xuong, N.H.3    Eyck, L.F.4    Taylor, S.S.5
  • 40
    • 2942527724 scopus 로고    scopus 로고
    • RIalpha subunit of PKA: A cAMP-free structure reveals a hydrophobic capping mechanism for docking cAMP into site B
    • Wu, J., Brown, S., Xuong, N. H., Taylor, S. S., RIalpha subunit of PKA: A cAMP-free structure reveals a hydrophobic capping mechanism for docking cAMP into site B. Structure (Camb.) 2004, 12, 1056-1064.
    • (2004) Structure (Camb.) , vol.12 , pp. 1056-1064
    • Wu, J.1    Brown, S.2    Xuong, N.H.3    Taylor, S.S.4
  • 41
    • 0029143803 scopus 로고
    • Regulatory subunit of protein kinase A: Structure of deletion mutant with cAMP binding domains
    • Su, Y., Dostmann, W. R., Herberg, F. W., Durick, K. et al., Regulatory subunit of protein kinase A: Structure of deletion mutant with cAMP binding domains. Science 1995, 269, 807-813.
    • (1995) Science , vol.269 , pp. 807-813
    • Su, Y.1    Dostmann, W.R.2    Herberg, F.W.3    Durick, K.4
  • 42
    • 0029878720 scopus 로고    scopus 로고
    • Visual molecular dynamics
    • VMD
    • Humphrey, W., Dalke, A., Schulten, K., VMD: Visual molecular dynamics. J. Mol. Graph. 1996, 14, 27-28, 33-38.
    • (1996) J. Mol. Graph , vol.14 , Issue.27-28 , pp. 33-38
    • Humphrey, W.1    Dalke, A.2    Schulten, K.3


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