Kinetic model for DBT desulphurization by resting whole cells of Pseudomonas putida CECT5279

Biochemical Engineering Journal

Volumn 39, Issue 3, 2008, Pages 486-495

  Alcon, A ^a   Martin, A B ^a   Santos, V E ^a   Gomez, E ^a   Garcia Ochoa, F ^a  

^a UNIVERSIDAD COMPLUTENSE DE MADRID   (Spain)

Author keywords

4S route; Biodesulphurization; Dibenzothiophene; Growth; Kinetic modelling; Kinetic parameters; Product inhibition; Pseudomonas putida

Indexed keywords

BACTERIA; BIOCATALYSTS; DESULFURIZATION; GROWTH KINETICS; KINETIC PARAMETERS;

BIODESULPHURIZATION; DIBENZOTHIOPHENE; KINETIC MODELING; PRODUCT INHIBITION; PSEUDOMONAS PUTIDA;

THIOPHENE;

DIBENZOTHIOPHENE DERIVATIVE; UNSPECIFIC MONOOXYGENASE;

ARTICLE; CATALYSIS; CELL AGING; CELL GROWTH; CHEMICAL REACTION; DESULFURIZATION; KINETICS; MICHAELIS MENTEN KINETICS; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; WHOLE CELL;

PSEUDOMONAS PUTIDA;

EID: 41549092851     PISSN: 1369703X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bej.2007.11.005     Document Type: Article

References (41)

1. Monticello D.J. Biodesulphurisation and the upgrading of petroleum distillates. Curr. Opin. Biotechnol. 11 (2000) 540-546
2. Kirimura K., Furuya T., Nishi Y., Ishii Y., Nino K., and Usami S. Biodesulphurisation of Dibenzothiophene and its derivates through the selective cleavage of carbon-sulphur bonds by a moderately thermophilic bacterium Bacillus subtilis WU-S2B. J. Biosci. Bioeng. 91 (2001) 262-266
3. Denome S.A., Olson E.S., and Young K.D. Identification and cloning of genes involved in specific desulphurization of dibenzothiophene by Rhodococcus sp. strain IGTS8. Appl. Environ. Microbiol. 59 (1993) 2837-2843
4. Oldfield C., Pogrebinsky O., Simmonds J., Olson E.S., and Kulpa C.H. Elucidation of the metabolic pathway for dibenzothiophene desulphurization by Rhodococcus sp. strain IGTS8 (ATCC 53968). Microbiology 143 (1997) 2961-2973
5. Denome S.A., Oldfield C., Nash L.J., and Young K.D. Characterization of the desulphurization genes from Rhodococcus sp. strain IGTS8. J. Bacteriol. 176 (1994) 6707-6716
6. Omori T., Saiki Y., Kasuga K., and Kodama T. Desulphurization of alkyl and aromatic sulphides and sulfonates by dibenzothiophene-desulphurising Rhodococcus sp. Strain SY1. Biosci. Biotechnol. Biochem. 59 (1995) 1195-1198
7. McFarland B., and Biodesulphurisation. Curr. Opin. Microbiol. 2 (1999) 257-264
8. Maghsoudi S., Vossoughi M., Kheirolomoom A., Tanaka E., and Katoh S. Biodesulphurisation of hydrocarbons and diesel fuels by Rhodococcus sp. strain P32C1. Biochem. Eng. J. 8 (2001) 151-156
9. Galan B., Diaz E., and Garcia J.L. Enhancing desulphurization by engineering a flavin reductase-encoding gene cassette in recombinant biocatalysts. Environ. Microbiol. 2 (2000) 687-694
10. Omori T., Monna L., Saiki Y., and Kodama T. Desulphurization of dibenzo-thiophene by Corynebacterium sp. strain SY-1. Appl. Environ. Microbiol. 58 (1992) 911-915
11. J.J. Kilbane. Mutant micro-organism useful for cleavage of organic C{single bond}S bonds. U.S. Patent 5104801 (1992).
12. Wang P., and Krawiec S. Desulfurization of dibenzothiophene to 2-hydroxybiphenil to some newly isolated bacterial trains. Arch. Microbiol. 161 (1994) 266-271
13. Wang P., and Krawiec S. Kinetic analyses of desulphurization of dibenzothiophene by Rhodococcus erythropolis in batch and fed-batch cultures. Appl. Environ. Microbiol. 61 (1996) 1670-1675
14. Ohshiro T., Suzuki K., and Izumi Y. Dibenzothiophene degrading enzymes responsible for the first step of DBT desulphurization by Rhodococcus erythropolis D-1: purification and characterization. J. Ferment. Bioeng. 83 (1996) 233-237
15. Setti L., Farinelli P., Di Martino S., Frassinetti S., Lanzarini G., and Pifferi P.G. Developments in destructive and non-destructive pathways for selective desulphurization in oil-bio-refining processes. Appl. Environ. Microbiol. 52 (1999) 111-117
16. Yan H., Kishimoto M., Omasa T., Katakura Y., Suga K., Okumura K., and Yoshikawa O. Increase in desulfurization activity of Rhodococcus erythropolis KA2-5-1 using ethanol feeding. J. Biosci. Bioeng. 89 (2000) 361-366
17. Gray K.A., Pogrebinsky O.S., Mrahko T., Xi L., Monticello D.J., and Squires C.H. Molecular mechanism of fossil fuels. Nat. Biotechnol. 14 (1996) 1705-1709
18. Xi L., Squires C.H., Monticello D.J., and Childs J.D. A Flavin Reductase Stimulates DszA and DszC Proteins of Rhodococcus erythropolis IGTS8 in Vitro. Chem. Biophys. Res. Commun. 230 (1997) 73-75
19. Ohshiro T., and Izumi Y. Microbial desulphurization of organic sulphur compounds in petroleum. Biosci. Biotechnol. Biochem. 63 (1999) 1-9
20. Nakayama N., Matsubara T., Ohshiro T., Moroto Y., Kawata Y., Koizumi K., Hirakawa Y., Suzuki M., Maruhashi K., Izumi Y., and Kurane R. A novel enzyme, 2′-hydroxybiphenyl-2-sulfinate desulfinase (DszB), from a dibenzothiphene-desulfurizing bacterium Rhodococcus erythropolis KA2-5-1: gene over-expression and enzyme characterization. Biochem. Biophys. Acta 1598 (2002) 122-130
21. Olson E.S., Stanley D.C., and Gallaguer J.R. Characterization of intermediates in the microbial desulfurization of dibenzothiophene. Energy Fuels 7 (1993) 159-164
22. Gallagher J.R., Olson E.S., and Stemly D.C. Microbial desulphurization of dibenzo-thiophene: a sulphur specific pathway. FEMS Microbiol. Lett. 107 (1993) 31-36
23. Konishi J., Ishii Y., Onaka T., Okumura K., and Suzuki M. Thermophilic carbon-sulphur-bond-targeted biodesulphurisation. Appl. Environ. Microbiol. 63 (1997) 3164-3169
24. Folsom B., Schieche D., Di Gracia P., Wener J., and Palmer S. Microbial desulphurization of alkyl-dibenzothiophenes from a hydrodesulfurized middle distillate by Rhodococcus erythropolis I-19. Appl. Environ. Microbiol. 65 (1999) 4967-4972
25. Kishimoto M., Inui M., Omasa T., Katakura Y., Suga K., and Okumura K. Efficient production of desulphurising cells with the aid of expert system. Biochem. Eng. J. 5 (2000) 143-147
26. Onaka T., Konishi J., Ishii Y., and Maruhashi K. Desulphurization characteristics of thermophilic Paenibacillus sp. Strain A11-2 against asymmetrically alkylated dibenzothiophenes. J. Biosci. Bioeng. 92 (2000) 193-196
27. Kobayashi M., Horiuchi K., Yoshikawa O., Hirasawa K., Ishii Y., Fujino K., Sugiyama H., and Maruhashi K. Kinetic analysis of microbial desulphurization of model and light gas oils containing multiple alkyl dibenzothiophenes. Biosci. Biotechnol. Biochem. 65 (2001) 298-301
28. Matsui T., Hirawawa K., Konishi J., Tanaka Y., Maruhashi K., and Kurane K. Microbial Desulphurization of Alkilated Dibenzothiophene and Alkylated Benzothiophene by Recombinant Rhodococcus sp. Strain T09. Appl. Microbiol. Biotechnol. 56 (2001) 196-200
29. Grossman M., Lee M., Prince R., Minak-Bernero G.G., and Pickering J. Deep desulphurization of extensively hydrodesulphurized middle distillate oil by Rhodo-coccus sp. Strain ECDR-1. Appl. Environ. Microbiol. 67 (2001) 1949-1952
30. Furuya T., Ishii Y., Noda K., Kino K., and Kirimura K. Thermophilic biodesulphurisation of hydrodesulphurized light gas oil by Mycobacterium phlei WU-F1. FEMS Microbiol. Lett. 221 (2003) 137-142
31. Li F., Xu P., Luo L., and Wang S. Deep desulphurization of hydro-desulphurization-treated diesel oil by a facultative thermophilic bacterium Mycobacterium sp. X7B. FEMS Microbiol. Lett. 223 (2003) 301-307
32. Luo M., Xing J., Gou Z., Li S., Liu H., and Chen J. Desulphurization of dibenzothiophene by lyophilized cells of Pseudomonas delafieldii R-8 in the presence of dodecane. Biochem. Eng. J. 13 (2003) 1-6
33. Rashtchi M., Mohebali G.H., Akbarnejad M.M., Towfighi J., Rasekh B., and Keytash A. Analysis of biodesulfurization of model oil system by the bacterium, strain RIPI-22. Biochem. Eng. J. 29 (2006) 169-173
34. Lei B., and Tu S.-Ch. Gene Over-expression, purification and identification of a desulfurization enzyme from Rhodococcus sp. Strain IGTS8 as a sulfide/sulfoxide monooxygenase. J. Bacteriol. 178 (1996) 5699-5705
35. Konishi J., Ishii Y., Onaka T., Ohta Y., Suzuki M., and Maruhashi K. Purification and characterization of dibenzothiophene sulfone monooxygenase and FMN-dependent NADH oxidorreductase from the thermophilic bacterium Paenibacillus sp. Strain A11-2. J. Biosci. Bioeng. 90 (2000) 607-613
36. Watkins L., Rodriguez R., Schneider D., Broderick R., Cruz M., Chambers R., Ruckman E., Cody M., and Mrachko G. Purification and characterization of the aromatic desulfinase, 2-(2′-hydroxyphenyl) benzene-sulfinate desulfinase. Arch. Biochem. Biophys. 415 (2000) 14-23 2003
37. Martin A.B., Alcon A., Santos V.E., and Garcia-Ochoa F. Production of a biocatalyst of Pseudomonas putida CECT5279 for DBT biodesulphurization for different media compositions. Energy Fuels 18 (2004) 851-857
38. Martin A.B., Alcon A., Santos V.E., and Garcia-Ochoa F. Production of a biocatalyst of Pseudomonas putida CECT5279 for DBT biodesulphurization: Influence of the operational conditions. Energy Fuels 19 (2005) 775-782
39. Alcon A., Santos V.E., Martin A.B., Yustos P., and Garcia-Ochoa F. Bio-desulphurization of DBT with Pseudomonas putida CECT5279: Influence of cell growth time on reducing equivalent concentration and HpaC activity. Biochem. Eng. J. 26 2-3 (2005) 168-175
40. Marquardt A.W. An algorithm for least-squares estimation of non-linear parameters. J. Soc. Indus. Appl. Math. 11 (1963) 431-441
41. Garcia-Ochoa F., Santos V.E., and Alcon A. Structured Kinetic Model for Xanthomonas campestris Growth. Enzyme Microb. Technol. 34 (2004) 583-594