메뉴 건너뛰기




Volumn 70, Issue 8, 2004, Pages 4432-4439

Culture-independent analysis of fecal enterobacteria in environmental samples by single-cell mRNA profiling

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CELL CULTURE; CELLS; DNA; FLUORESCENCE; GENES; MICROBIOLOGY; WASTEWATER TREATMENT; WATER QUALITY;

EID: 4143096968     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.8.4432-4439.2004     Document Type: Article
Times cited : (10)

References (27)
  • 1
    • 0027083350 scopus 로고
    • A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli
    • Almiron, M., A. J. Link, D. Furlong, and R. Kolter. 1992. A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli. Genes Dev. 6:2646-2654.
    • (1992) Genes Dev. , vol.6 , pp. 2646-2654
    • Almiron, M.1    Link, A.J.2    Furlong, D.3    Kolter, R.4
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amaan, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amaan, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0032716841 scopus 로고    scopus 로고
    • Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    • Azam, T., A. Iwata, A. Nishimura, S. Ueda, and A. Ishihama. 1999. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J. Bacteriol. 181:6361-6370.
    • (1999) J. Bacteriol. , vol.181 , pp. 6361-6370
    • Azam, T.1    Iwata, A.2    Nishimura, A.3    Ueda, S.4    Ishihama, A.5
  • 4
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Eschenchia coli
    • Ball, C. A., R. Osuna, K. C. Ferguson, and R. C. Johnson. 1992. Dramatic changes in Fis levels upon nutrient upshift in Eschenchia coli. J. Bacteriol. 174:8043-8056.
    • (1992) J. Bacteriol. , vol.174 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 6
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny interface package (version 3.2)
    • Felsenstein, J. 1989. PHYLIP - phylogeny interface package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 7
    • 0027208726 scopus 로고
    • Detection of mRNA in Streptomyces cells by whole-cell hybridization with digoxigenin-labeled probes
    • Hahn, D., R. A. Amann, and J. Zeyer. 1993. Detection of mRNA in Streptomyces cells by whole-cell hybridization with digoxigenin-labeled probes. Appl. Environ. Microbiol. 59:2753-2757.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2753-2757
    • Hahn, D.1    Amann, R.A.2    Zeyer, J.3
  • 8
    • 0028862922 scopus 로고
    • In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities
    • Hodson, R. E., W. A Dustman, R. P. Garg, and M. A. Moran. 1995. In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities. Appl. Environ. Microbiol. 61:4074-4082.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4074-4082
    • Hodson, R.E.1    Dustman, W.A.2    Garg, R.P.3    Moran, M.A.4
  • 9
    • 0023693199 scopus 로고
    • Isolation of the gene encoding the Hin recombinational enhancer binding protein
    • Johnson, R. C., C. A. Ball, D. Pfeffer, and M. I. Simon. 1988. Isolation of the gene encoding the Hin recombinational enhancer binding protein. Proc. Natl. Acad. Sci. USA 85:3484-3488.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3484-3488
    • Johnson, R.C.1    Ball, C.A.2    Pfeffer, D.3    Simon, M.I.4
  • 10
    • 0007998659 scopus 로고
    • Escherichia coli host factor for site-specific DNA inversion: Cloning and characterization of the fis gene
    • Koch, C., J. Vandekerckhove, and R. Kahmann. 1988. Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene. Proc. Natl. Acad. Sci. USA 85:4237-4241.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4237-4241
    • Koch, C.1    Vandekerckhove, J.2    Kahmann, R.3
  • 11
    • 0028181132 scopus 로고
    • 38-dependent expression of a core Escherichia coli starvation gene, pexB
    • 38-dependent expression of a core Escherichia coli starvation gene, pexB. J. Bacteriol. 176:3928-3935.
    • (1994) J. Bacteriol. , vol.176 , pp. 3928-3935
    • Lomovskaya, O.L.1    Kidwell, J.P.2    Matin, A.3
  • 12
  • 13
    • 0030763552 scopus 로고    scopus 로고
    • Rapid detection of Enterobacteriaceae in urine by fluorescent 16S rRNA in situ hybridization on membrane filters
    • Mittelman, M. W., M. Habash, J. M. Lacroix, A. E. Khoury, and M. Krajden. 1997. Rapid detection of Enterobacteriaceae in urine by fluorescent 16S rRNA in situ hybridization on membrane filters. J. Microbiol. Methods 30:153-160.
    • (1997) J. Microbiol. Methods , vol.30 , pp. 153-160
    • Mittelman, M.W.1    Habash, M.2    Lacroix, J.M.3    Khoury, A.E.4    Krajden, M.5
  • 14
    • 0343192453 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms
    • Moter, A., and U. B. Gobel. 2000. Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J. Microbiol. Methods 41:85-112.
    • (2000) J. Microbiol. Methods , vol.41 , pp. 85-112
    • Moter, A.1    Gobel, U.B.2
  • 15
    • 0026508913 scopus 로고
    • FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions
    • Nilsson, L., H. Verbeek, E. Vijgenboom, C. van Drunen, A. Vanet, and L. Bosch. 1992. FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions. J. Bacteriol. 174:921-929.
    • (1992) J. Bacteriol. , vol.174 , pp. 921-929
    • Nilsson, L.1    Verbeek, H.2    Vijgenboom, E.3    Van Drunen, C.4    Vanet, A.5    Bosch, L.6
  • 16
    • 0029924025 scopus 로고    scopus 로고
    • Induction of RpoS-dependent functions in glucose-limited continuous culture: What level of nutrient limitation induces the stationary phase of Escherichia coli?
    • Notley, L., and T. Ferenci. 1996. Induction of RpoS-dependent functions in glucose-limited continuous culture: what level of nutrient limitation induces the stationary phase of Escherichia coli? J. Bacteriol. 178:1465-1468.
    • (1996) J. Bacteriol. , vol.178 , pp. 1465-1468
    • Notley, L.1    Ferenci, T.2
  • 17
    • 0035461236 scopus 로고    scopus 로고
    • Growth patterns of two marine isolates: Adaptations to substrate patchiness?
    • Pernthaler, A., J. Pernthaler, H. Eilers, and R. Amann. 2001. Growth patterns of two marine isolates: adaptations to substrate patchiness? Appl. Environ. Microbiol. 67:4077-4083.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4077-4083
    • Pernthaler, A.1    Pernthaler, J.2    Eilers, H.3    Amann, R.4
  • 18
    • 0037816368 scopus 로고    scopus 로고
    • Single-cell protein profiling of wastewater enterobacterial communities predicts disinfection efficiency
    • Ponniah, G., H. Chen, R. Michielutti, N. Salonen, and P. Blum. 2003. Single-cell protein profiling of wastewater enterobacterial communities predicts disinfection efficiency. Appl. Environ. Microbiol. 69:4227-4235.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4227-4235
    • Ponniah, G.1    Chen, H.2    Michielutti, R.3    Salonen, N.4    Blum, P.5
  • 19
    • 0027264175 scopus 로고
    • Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms
    • Poulsen, L. K., G. Ballard, and D. A. Stahl. 1993. Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl. Environ. Microbiol. 59:1354-1360.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1354-1360
    • Poulsen, L.K.1    Ballard, G.2    Stahl, D.A.3
  • 20
    • 0033833428 scopus 로고    scopus 로고
    • Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: Specificity and potential applications
    • Regnault, B., S. Martin-Delautre, M. Lejay-Collin, M. Lefevre, and P. A. D. Grimont. 2000. Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: specificity and potential applications. Res. Microbiol. 151:521-533.
    • (2000) Res. Microbiol. , vol.151 , pp. 521-533
    • Regnault, B.1    Martin-Delautre, S.2    Lejay-Collin, M.3    Lefevre, M.4    Grimont, P.A.D.5
  • 23
    • 0032876279 scopus 로고    scopus 로고
    • Bacterial growth state distinguished by single-cell protein profiling: Does chlorination kill coliforms in municipal effluent?
    • Rockabrand, D., T. Austin, R. Kaiser, and P. Blum. 1999. Bacterial growth state distinguished by single-cell protein profiling: does chlorination kill coliforms in municipal effluent? Appl. Environ. Microbiol. 65:4181-4188.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4181-4188
    • Rockabrand, D.1    Austin, T.2    Kaiser, R.3    Blum, P.4
  • 24
    • 0036142777 scopus 로고    scopus 로고
    • Detection and enumeration of coliforms in drinking water: Current methods and emerging approaches
    • Rompre, A., P. Servais, J. Baudart, M. de Roubin, and P. Laurent. 2002. Detection and enumeration of coliforms in drinking water: current methods and emerging approaches. J. Microbiol. Methods 49:31-54.
    • (2002) J. Microbiol. Methods , vol.49 , pp. 31-54
    • Rompre, A.1    Servais, P.2    Baudart, J.3    De Roubin, M.4    Laurent, P.5
  • 25
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 26
    • 0030688049 scopus 로고    scopus 로고
    • Visualization of specifie gene expression in individual Salmonella enterica serovar Typhimurium cells by in situ PCR
    • Tolker-Nielsen, T., K. Holmstrom, and S. Molin. 1997. Visualization of specifie gene expression in individual Salmonella enterica serovar Typhimurium cells by in situ PCR. Appl. Environ. Microbiol. 63:4196-4203.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4196-4203
    • Tolker-Nielsen, T.1    Holmstrom, K.2    Molin, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.