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Volumn 78, Issue 17, 2004, Pages 9306-9316

Phylogenetic analysis of polyomavirus simian virus 40 from monkeys and humans reveals genetic variation

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POLIOMYELITIS VACCINE;

EID: 4143074755     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.17.9306-9316.2004     Document Type: Article
Times cited : (26)

References (48)
  • 2
    • 0001387226 scopus 로고    scopus 로고
    • Molecular evolution and epidemiology of JC virus
    • K. Khalili and G. L. Stoner (ed.). Wiley-Liss, Inc., New York, N.Y.
    • Agostini, H. T., D. V. Jobes, and G. L. Stoner. 2001. Molecular evolution and epidemiology of JC virus, p. 491-526. In K. Khalili and G. L. Stoner (ed.), Human polyomaviruses: molecular and clinical perspectives. Wiley-Liss, Inc., New York, N.Y.
    • (2001) Human Polyomaviruses: Molecular and Clinical Perspectives , pp. 491-526
    • Agostini, H.T.1    Jobes, D.V.2    Stoner, G.L.3
  • 3
    • 0031049177 scopus 로고    scopus 로고
    • JC virus regulatory region rearrangements and genotypes in progressive multifocal leukoencephalopathy: Two independent aspects of virus variation
    • Agostini, H. T., C. F. Ryschkewitsch, E. J. Singer, and G. L. Stoner. 1997. JC virus regulatory region rearrangements and genotypes in progressive multifocal leukoencephalopathy: two independent aspects of virus variation. J. Gen. Virol. 78:659-664.
    • (1997) J. Gen. Virol. , vol.78 , pp. 659-664
    • Agostini, H.T.1    Ryschkewitsch, C.F.2    Singer, E.J.3    Stoner, G.L.4
  • 5
    • 1842538760 scopus 로고    scopus 로고
    • SV40-positive brain tumor in scientist with risk of laboratory exposure to the virus
    • Arrington, A. S., M. S. Moore, and J. S. Butel. 2004. SV40-positive brain tumor in scientist with risk of laboratory exposure to the virus. Oncogene 23:2231-2235.
    • (2004) Oncogene , vol.23 , pp. 2231-2235
    • Arrington, A.S.1    Moore, M.S.2    Butel, J.S.3
  • 6
    • 0010470931 scopus 로고
    • Annotated nucleotide sequence and restriction site lists for selected papovavirus strains
    • N. P. Salzman (ed.). Plenum Press, New York, N.Y.
    • Buckler, C. E., and N. P. Salzman. 1986. Annotated nucleotide sequence and restriction site lists for selected papovavirus strains, p. 379-447. In N. P. Salzman (ed.), The Papovaviridae, vol. 1. The polyomaviruses. Plenum Press, New York, N.Y.
    • (1986) The Papovaviridae, Vol. 1. The Polyomaviruses , vol.1 , pp. 379-447
    • Buckler, C.E.1    Salzman, N.P.2
  • 7
    • 0035663146 scopus 로고    scopus 로고
    • Increasing evidence for involvement of SV40 in human cancer
    • Butel, J. S. 2001. Increasing evidence for involvement of SV40 in human cancer. Dis. Markers 17:167-172.
    • (2001) Dis. Markers , vol.17 , pp. 167-172
    • Butel, J.S.1
  • 8
    • 0003002776 scopus 로고
    • Optimal algorithms for comparing trees with labeled leaves
    • Day, W. H. E. 1985. Optimal algorithms for comparing trees with labeled leaves. J. Classification 2:7-28.
    • (1985) J. Classification , vol.2 , pp. 7-28
    • Day, W.H.E.1
  • 9
    • 84962997608 scopus 로고
    • Analysis of quartet dissimilarity measures between undirected phylogenetic trees
    • Day, W. H. E. 1986. Analysis of quartet dissimilarity measures between undirected phylogenetic trees. Syst. Zool. 35:325-333.
    • (1986) Syst. Zool. , vol.35 , pp. 325-333
    • Day, W.H.E.1
  • 10
    • 0013901284 scopus 로고
    • Loss of transplantation antigen in primary simian virus 40-induced tumors and their metastases
    • Deichman, G. I., and T. E. Kluchareva. 1966. Loss of transplantation antigen in primary simian virus 40-induced tumors and their metastases. J. Natl. Cancer Inst. 36:647-655.
    • (1966) J. Natl. Cancer Inst. , vol.36 , pp. 647-655
    • Deichman, G.I.1    Kluchareva, T.E.2
  • 12
    • 4143110753 scopus 로고
    • An infectious deoxyribonucleic acid derived from vacuolating virus (SV40)
    • Gerber, P. 1962. An infectious deoxyribonucleic acid derived from vacuolating virus (SV40). Virology 16:96-97.
    • (1962) Virology , vol.16 , pp. 96-97
    • Gerber, P.1
  • 13
    • 0013794457 scopus 로고
    • Prevention of SV40 virus oncogenesis in hamsters. I. Tumor resistance induced by human cells transformed by SV40
    • Girardi, A. J. 1965. Prevention of SV40 virus oncogenesis in hamsters. I. Tumor resistance induced by human cells transformed by SV40. Proc. Natl. Acad. Sci. USA 54:445-451.
    • (1965) Proc. Natl. Acad. Sci. USA , vol.54 , pp. 445-451
    • Girardi, A.J.1
  • 14
    • 0001483634 scopus 로고
    • Development of tumors in hamsters inoculated in the neonatal period with vacuolating virus, SV40
    • Girardi, A. J., B. H. Sweet, V. B. Slotnick, and M. R. Hilleman. 1962. Development of tumors in hamsters inoculated in the neonatal period with vacuolating virus, SV40. Proc. Soc. Exp. Biol. Med. 109:649-660.
    • (1962) Proc. Soc. Exp. Biol. Med. , vol.109 , pp. 649-660
    • Girardi, A.J.1    Sweet, B.H.2    Slotnick, V.B.3    Hilleman, M.R.4
  • 15
    • 0014202537 scopus 로고
    • Selective extraction of polyoma DNA from infected mouse cell cultures
    • Hirt, B. 1967. Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26:365-369.
    • (1967) J. Mol. Biol. , vol.26 , pp. 365-369
    • Hirt, B.1
  • 16
    • 84919219135 scopus 로고
    • The vacuolating virus of monkeys. I. Isolation, growth characteristics, and inclusion body formation
    • Hsiung, G. D., and W. H. Gaylord, Jr. 1961. The vacuolating virus of monkeys. I. Isolation, growth characteristics, and inclusion body formation. J. Exp. Med. 114:975-986.
    • (1961) J. Exp. Med. , vol.114 , pp. 975-986
    • Hsiung, G.D.1    Gaylord Jr., W.H.2
  • 17
    • 0033619109 scopus 로고    scopus 로고
    • Maintenance of episomal SV40 genomes in GM637 human fibroblasts
    • Huang, K. C., E. F. Yamasaki, and R. M. Snapka. 1999. Maintenance of episomal SV40 genomes in GM637 human fibroblasts. Virology 262:457-469.
    • (1999) Virology , vol.262 , pp. 457-469
    • Huang, K.C.1    Yamasaki, E.F.2    Snapka, R.M.3
  • 18
    • 0026673906 scopus 로고
    • Genetic analysis of simian virus 40 from brains and kidneys of macaque monkeys
    • Ilyinskii, P. O., M. D. Daniel, C. J. Horvath, and R. C. Desrosiers. 1992. Genetic analysis of simian virus 40 from brains and kidneys of macaque monkeys. J. Virol. 66:6353-6360.
    • (1992) J. Virol. , vol.66 , pp. 6353-6360
    • Ilyinskii, P.O.1    Daniel, M.D.2    Horvath, C.J.3    Desrosiers, R.C.4
  • 19
    • 0031713459 scopus 로고    scopus 로고
    • Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus
    • Jobes, D. V., S. C. Chima, C. F. Ryschkewitsch, and G. L. Stoner. 1998. Phylogenetic analysis of 22 complete genomes of the human polyomavirus JC virus. J. Gen. Virol. 79:2491-2498.
    • (1998) J. Gen. Virol. , vol.79 , pp. 2491-2498
    • Jobes, D.V.1    Chima, S.C.2    Ryschkewitsch, C.F.3    Stoner, G.L.4
  • 20
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0021702065 scopus 로고
    • Cloning of SV40 genomes from human brain tumors
    • Krieg, P., and G. Scherer. 1984. Cloning of SV40 genomes from human brain tumors. Virology 138:336-340.
    • (1984) Virology , vol.138 , pp. 336-340
    • Krieg, P.1    Scherer, G.2
  • 22
    • 0026701984 scopus 로고
    • Two synthetic Sp1-binding sites functionally substitute for the 21-base-pair repeat region to activate simian virus 40 growth in CV-1 cells
    • Lednicky, J., and W. R. Folk. 1992. Two synthetic Sp1-binding sites functionally substitute for the 21-base-pair repeat region to activate simian virus 40 growth in CV-1 cells. J. Virol. 66:6379-6390.
    • (1992) J. Virol. , vol.66 , pp. 6379-6390
    • Lednicky, J.1    Folk, W.R.2
  • 23
    • 0031969426 scopus 로고    scopus 로고
    • Natural isolates of simian virus 40 from immunocompromised monkeys display extensive genetic heterogeneity: New implications for polyomavirus disease
    • Lednicky, J. A., A. S. Arrington, A. R. Stewart, X. M. Dai, C. Wong, S. Jafar, M. Murphey-Corb, and J. S. Butel. 1998. Natural isolates of simian virus 40 from immunocompromised monkeys display extensive genetic heterogeneity: new implications for polyomavirus disease. J. Virol. 72:3980-3990.
    • (1998) J. Virol. , vol.72 , pp. 3980-3990
    • Lednicky, J.A.1    Arrington, A.S.2    Stewart, A.R.3    Dai, X.M.4    Wong, C.5    Jafar, S.6    Murphey-Corb, M.7    Butel, J.S.8
  • 24
    • 0030743738 scopus 로고    scopus 로고
    • Tissue culture adaptation of natural isolates of simian virus 40: Changes occur in viral regulatory region but not in carboxy-terminal domain of large T-antigen
    • Lednicky, J. A., and J. S. Butel. 1997. Tissue culture adaptation of natural isolates of simian virus 40: changes occur in viral regulatory region but not in carboxy-terminal domain of large T-antigen. J. Gen. Virol. 78:1697-1705.
    • (1997) J. Gen. Virol. , vol.78 , pp. 1697-1705
    • Lednicky, J.A.1    Butel, J.S.2
  • 25
    • 0035106012 scopus 로고    scopus 로고
    • Simian virus 40 regulatory region structural diversity and the association of viral archetypal regulatory regions with human brain tumors
    • Lednicky, J. A., and J. S. Butel. 2001. Simian virus 40 regulatory region structural diversity and the association of viral archetypal regulatory regions with human brain tumors. Semin. Cancer Biol. 11:39-47.
    • (2001) Semin. Cancer Biol. , vol.11 , pp. 39-47
    • Lednicky, J.A.1    Butel, J.S.2
  • 26
    • 0028971951 scopus 로고
    • Natural simian virus 40 strains are present in human choroid plexus and ependymoma tumors
    • Lednicky, J. A., R. L. Garcea, D. J. Bergsagel, and J. S. Butel. 1995. Natural simian virus 40 strains are present in human choroid plexus and ependymoma tumors. Virology 212:710-717.
    • (1995) Virology , vol.212 , pp. 710-717
    • Lednicky, J.A.1    Garcea, R.L.2    Bergsagel, D.J.3    Butel, J.S.4
  • 28
    • 0028817646 scopus 로고
    • Artificial modification of the viral regulatory region improves tissue culture growth of SV40 strain 776
    • Lednicky, J. A., C. Wong, and J. S. Butel. 1995. Artificial modification of the viral regulatory region improves tissue culture growth of SV40 strain 776. Virus Res. 35:143-153.
    • (1995) Virus Res. , vol.35 , pp. 143-153
    • Lednicky, J.A.1    Wong, C.2    Butel, J.S.3
  • 29
    • 0024460209 scopus 로고
    • Regulatory sequences of SV40 variants isolated from patients with progressive multifocal leukoencephalopathy
    • Martin, J. D. 1989. Regulatory sequences of SV40 variants isolated from patients with progressive multifocal leukoencephalopathy. Virus Res. 14:85-94.
    • (1989) Virus Res. , vol.14 , pp. 85-94
    • Martin, J.D.1
  • 30
    • 0000145173 scopus 로고
    • Excretion of vacuolating SV-40 virus (papova virus group) after ingestion as a contaminant of oral poliovaccine
    • Melnick, J. L., and S. Stinebaugh. 1962. Excretion of vacuolating SV-40 virus (papova virus group) after ingestion as a contaminant of oral poliovaccine. Proc. Soc. Exp. Biol. Med. 109:965-968.
    • (1962) Proc. Soc. Exp. Biol. Med. , vol.109 , pp. 965-968
    • Melnick, J.L.1    Stinebaugh, S.2
  • 31
    • 0031857765 scopus 로고    scopus 로고
    • Identification of SV40 in brain, kidney and urine of healthy and SIV-infected rhesus monkeys
    • Newman, J. S., G. B. Baskin, and R. J. Frisque. 1998. Identification of SV40 in brain, kidney and urine of healthy and SIV-infected rhesus monkeys. J. Neurovirol. 4:394-406.
    • (1998) J. Neurovirol. , vol.4 , pp. 394-406
    • Newman, J.S.1    Baskin, G.B.2    Frisque, R.J.3
  • 32
    • 0038205525 scopus 로고    scopus 로고
    • The archetype enhancer of simian virus 40 DNA is duplicated during virus growth in human cells and rhesus monkey kidney cells but not in green monkey kidney cells
    • O'Neill, F. J., J. E. Greenlee, and H. Carney. 2003. The archetype enhancer of simian virus 40 DNA is duplicated during virus growth in human cells and rhesus monkey kidney cells but not in green monkey kidney cells. Virology 310:173-182.
    • (2003) Virology , vol.310 , pp. 173-182
    • O'Neill, F.J.1    Greenlee, J.E.2    Carney, H.3
  • 33
    • 0002393841 scopus 로고
    • The use of tree comparison metrics
    • Penny, D., and M. D. Hendy. 1985. The use of tree comparison metrics. Syst. Zool. 34:75-82.
    • (1985) Syst. Zool. , vol.34 , pp. 75-82
    • Penny, D.1    Hendy, M.D.2
  • 34
    • 0033572586 scopus 로고    scopus 로고
    • Unique strains of SV40 in commercial poliovaccines from 1955 not readily identifiable with current testing for SV40 infection
    • Rizzo, P., I. Di Resta, A. Powers, H. Ratner, and M. Carbone. 1999. Unique strains of SV40 in commercial poliovaccines from 1955 not readily identifiable with current testing for SV40 infection. Cancer Res. 59:6103-6108.
    • (1999) Cancer Res. , vol.59 , pp. 6103-6108
    • Rizzo, P.1    Di Resta, I.2    Powers, A.3    Ratner, H.4    Carbone, M.5
  • 35
    • 0026092377 scopus 로고
    • Recurring theme of changes in the transcriptional control region of BK virus during adaptation to cell culture
    • Rubinstein, R., B. C. Schoonakker, and E. H. Barley. 1991. Recurring theme of changes in the transcriptional control region of BK virus during adaptation to cell culture. J. Virol. 65:1600-1604.
    • (1991) J. Virol. , vol.65 , pp. 1600-1604
    • Rubinstein, R.1    Schoonakker, B.C.2    Barley, E.H.3
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0032814702 scopus 로고    scopus 로고
    • Examination of poliovirus vaccine preparations for SV40 sequences
    • Sangar, D., P. A. Pipkin, D. J. Wood, and P. D. Minor. 1999. Examination of poliovirus vaccine preparations for SV40 sequences. Biologicals 27:1-10.
    • (1999) Biologicals , vol.27 , pp. 1-10
    • Sangar, D.1    Pipkin, P.A.2    Wood, D.J.3    Minor, P.D.4
  • 38
    • 0032915955 scopus 로고    scopus 로고
    • Association of simian virus 40 with a central nervous system lesion distinct from progressive multifocal leukoencephalopathy in macaques with AIDS
    • Simon, M. A., P. O. Ilyinskii, G. B. Baskin, H. Y. Knight, D. R. Pauley, and A. A. Lackner. 1999. Association of simian virus 40 with a central nervous system lesion distinct from progressive multifocal leukoencephalopathy in macaques with AIDS. Am. J. Pathol. 154:437-446.
    • (1999) Am. J. Pathol. , vol.154 , pp. 437-446
    • Simon, M.A.1    Ilyinskii, P.O.2    Baskin, G.B.3    Knight, H.Y.4    Pauley, D.R.5    Lackner, A.A.6
  • 39
    • 0030586020 scopus 로고    scopus 로고
    • Identification of a variable region at the carboxy terminus of SV40 large T-antigen
    • Stewart, A. R., J. A. Lednicky, U. S. Benzick, M. J. Tevethia, and J. S. Butel. 1996. Identification of a variable region at the carboxy terminus of SV40 large T-antigen. Virology 221:355-361.
    • (1996) Virology , vol.221 , pp. 355-361
    • Stewart, A.R.1    Lednicky, J.A.2    Benzick, U.S.3    Tevethia, M.J.4    Butel, J.S.5
  • 40
    • 0031971856 scopus 로고    scopus 로고
    • Sequence analyses of human tumor-associated SV40 DNAs and SV40 viral isolates from monkeys and humans
    • Stewart, A. R., J. A. Lednicky, and J. S. Butel. 1998. Sequence analyses of human tumor-associated SV40 DNAs and SV40 viral isolates from monkeys and humans. J. Neurovirol. 4:182-193.
    • (1998) J. Neurovirol. , vol.4 , pp. 182-193
    • Stewart, A.R.1    Lednicky, J.A.2    Butel, J.S.3
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 0041318840 scopus 로고    scopus 로고
    • SV40 in human brain cancers and non-Hodgkin's lymphoma
    • Vilchez, R. A., and J. S. Butel. 2003. SV40 in human brain cancers and non-Hodgkin's lymphoma. Oncogene 22:5164-5172.
    • (2003) Oncogene , vol.22 , pp. 5164-5172
    • Vilchez, R.A.1    Butel, J.S.2
  • 48
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C. R., O. Kandier, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandier, O.2    Wheelis, M.L.3


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