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Volumn 341, Issue 5, 2004, Pages 1205-1214

Crystal structure of an empty capsid of turnip yellow mosaic virus

Author keywords

artificial top component; TYMV; X ray crystallography

Indexed keywords

AMINO TERMINAL SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; CRYSTALLIZATION; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; VIRUS CAPSID; VIRUS INFECTIVITY;

EID: 4143051720     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.06.085     Document Type: Article
Times cited : (21)

References (34)
  • 1
    • 0016600037 scopus 로고
    • The chemical basis of virus structure, dissociation and reassembly
    • (Neuberger, A. & Tatum E. L., eds), North-Holland, American Elsevier, Amsterdam, New York.
    • Kaper, J. M. (1975). The chemical basis of virus structure, dissociation and reassembly. In Frontiers in Biology (Neuberger, A. & Tatum E. L., eds), vol. 39, pp. 1-485, North-Holland, American Elsevier, Amsterdam, New York.
    • (1975) Frontiers in Biology , vol.39 , pp. 1-485
    • Kaper, J.M.1
  • 2
    • 0642350423 scopus 로고
    • Physicochemical studies of the turnip yellow mosaic virus
    • R. Markham Physicochemical studies of the turnip yellow mosaic virus Discuss. Faraday Soc. 11 1951 221 227
    • (1951) Discuss. Faraday Soc. , vol.11 , pp. 221-227
    • Markham, R.1
  • 3
    • 0013862152 scopus 로고
    • Arrangement of protein subunits and distribution of nucleic acid in turnip yellow mosaic virus. I. X-ray diffraction studies
    • A. Klug, W. Longley, and R. Leberman Arrangement of protein subunits and distribution of nucleic acid in turnip yellow mosaic virus. I. X-ray diffraction studies J. Mol. Biol. 15 1966 315 343
    • (1966) J. Mol. Biol. , vol.15 , pp. 315-343
    • Klug, A.1    Longley2    Leberman, R.W.3
  • 4
    • 0013934777 scopus 로고
    • Structural similarity of artificial and natural top components of turnip yellow mosaic virus
    • W. Longley, and R. Leberman Structural similarity of artificial and natural top components of turnip yellow mosaic virus J. Mol. Biol. 19 1966 223 225
    • (1966) J. Mol. Biol. , vol.19 , pp. 223-225
    • Longley1    Leberman, R.W.2
  • 5
    • 0013862410 scopus 로고
    • Arrangement of protein subunits and the distribution of nucleic acid in turnip yellow mosaic virus. 2. Electron microscopic studies
    • J.T. Finch, and A. Klug Arrangement of protein subunits and the distribution of nucleic acid in turnip yellow mosaic virus. 2. Electron microscopic studies J. Mol. Biol. 15 1966 344 364
    • (1966) J. Mol. Biol. , vol.15 , pp. 344-364
    • Finch1    Klug, A.J.T.2
  • 6
    • 0026801025 scopus 로고
    • In vitro decapsidation of turnip yellow mosaic-virus investigated by cryoelectron microscopy - A model for the decapsidation of a small isometric virus
    • M. Adrian, P.A. Timmins, and J. Witz In vitro decapsidation of turnip yellow mosaic-virus investigated by cryoelectron microscopy - a model for the decapsidation of a small isometric virus J. Gen. Virol. 73 1992 2079 2083
    • (1992) J. Gen. Virol. , vol.73 , pp. 2079-2083
    • Adrian, M.1    Timmins2    Witz, J.P.A.3
  • 7
    • 0030584685 scopus 로고    scopus 로고
    • Difference imaging reveals ordered regions of RNA in turnip yellow mosaic virus
    • B. Bottcher, and R.A. Crowther Difference imaging reveals ordered regions of RNA in turnip yellow mosaic virus Structure 4 1996 387 394
    • (1996) Structure , vol.4 , pp. 387-394
    • Bottcher1    Crowther, R.A.B.2
  • 8
    • 0019141372 scopus 로고
    • Effect of freezing and thawing on the structure of turnip yellow mosaic virus
    • M. Katouzian-Safadi, A. Favre, and A.L. Haenni Effect of freezing and thawing on the structure of turnip yellow mosaic virus Eur. J. Biochem. 112 1980 479 486
    • (1980) Eur. J. Biochem. , vol.112 , pp. 479-486
    • Katouzian-Safadi, M.1    Favre2    Haenni, A.L.A.3
  • 9
    • 0020983413 scopus 로고
    • Evidence for the presence of a hole in the capsid of turnip yellow mosaic-virus after RNA release by freezing and thawing - Decapsidation of turnip yellow mosaic-virus in vitro
    • M. Katouzian-Safadi, C. Berthetcolominas, J. Witz, and J. Kruse Evidence for the presence of a hole in the capsid of turnip yellow mosaic-virus After RNA release by freezing and thawing - decapsidation of turnip yellow mosaic-virus in vitro Eur. J. Biochem. 137 1983 47 55
    • (1983) Eur. J. Biochem. , vol.137 , pp. 47-55
    • Katouzian-Safadi, M.1    Berthetcolominas, C.2    Witz3    Kruse, J.J.4
  • 12
    • 0035815102 scopus 로고    scopus 로고
    • Structural studies on the empty capsids of Physalis mottle virus
    • S.S. Krishna, M. Sastri, H.S. Savithri, and M.R.N. Murthy Structural studies on the empty capsids of Physalis mottle virus J. Mol. Biol. 307 2001 1035 1047
    • (2001) J. Mol. Biol. , vol.307 , pp. 1035-1047
    • Krishna, S.S.1    Sastri, M.2    Savithri3    Murthy, M.R.N.H.S.4
  • 13
    • 0017328923 scopus 로고
    • Comparative neutron small-angle scattering study of small spherical RNA viruses
    • B. Jacrot, C. Chauvin, and J. Witz Comparative neutron small-angle scattering study of small spherical RNA viruses Nature 266 1977 417 421
    • (1977) Nature , vol.266 , pp. 417-421
    • Jacrot, B.1    Chauvin2    Witz, J.C.3
  • 14
    • 0018816906 scopus 로고
    • Identification of binding-sites of turnip yellow mosaic-virus protein and RNA by crosslinks induced in situ
    • B. Ehresmann, J.P. Briand, J. Reinbolt, and J. Witz Identification of binding-sites of turnip yellow mosaic-virus protein and RNA by crosslinks induced in situ Eur. J. Biochem. 108 1980 123 129
    • (1980) Eur. J. Biochem. , vol.108 , pp. 123-129
    • Ehresmann, B.1    Briand, J.P.2    Reinbolt3    Witz, J.J.4
  • 15
    • 0037108909 scopus 로고    scopus 로고
    • Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA
    • H.H.J. Bink, K. Hellendoorn, J. van der Meulen, and C.W.A. Pleij Protonation of non-Watson-Crick base pairs and encapsidation of turnip yellow mosaic virus RNA Proc. Natl Acad. Sci. USA 99 2002 13465 13470
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 13465-13470
    • Bink, H.H.J.1    Hellendoorn, K.2    Der Meulen, V.3    Pleij, C.W.A.J.4
  • 16
    • 0030462822 scopus 로고    scopus 로고
    • Protonatable hairpins are conserved in the 5′-untranslated region of tymovirus RNAs
    • K. Hellendoorn, P.J.A. Michiels, R. Buitenhuis, and C.W.A. Pleij Protonatable hairpins are conserved in the 5′-untranslated region of tymovirus RNAs Nucl. Acids Res. 24 1996 4910 4917
    • (1996) Nucl. Acids Res. , vol.24 , pp. 4910-4917
    • Hellendoorn, K.1    Michiels, P.J.A.2    Buitenhuis3    Pleij, C.W.A.R.4
  • 17
    • 0030748943 scopus 로고    scopus 로고
    • A functional role for the conserved protonatable hairpins in the 5′ untranslated region of turnip yellow mosaic virus RNA
    • K. Hellendoorn, P.W.G. Verlaan, and C.W.A. Pleij A functional role for the conserved protonatable hairpins in the 5′ untranslated region of turnip yellow mosaic virus RNA J. Virol. 71 1997 8774 8779
    • (1997) J. Virol. , vol.71 , pp. 8774-8779
    • Hellendoorn, K.1    Verlaan2    Pleij, C.W.A.P.W.3
  • 18
    • 0027960331 scopus 로고
    • Crystal-structure of a bacteriophage-RNA coat protein-operator complex
    • K. Valegrd, J.B. Murray, P.G. Stockley, N.J. Stonehouse, and L. Liljas Crystal-structure of a bacteriophage-RNA coat protein-operator complex Nature 371 1994 623 626
    • (1994) Nature , vol.371 , pp. 623-626
    • Valegrd, K.1    Murray, J.B.2    Stockley, P.G.3    Stonehouse4    Liljas, L.N.J.5
  • 19
    • 0042389769 scopus 로고    scopus 로고
    • Visualization by cryo-electron microscopy of genomic RNA that binds to the protein capsid inside bacteriophage MS2
    • R. Koning, S. van den Worm, J.R. Plaisier, J. van Duin, J.P. Abrahams, and H. Koerten Visualization by cryo-electron microscopy of genomic RNA that binds to the protein capsid inside bacteriophage MS2 J. Mol. Biol. 332 2003 415 422
    • (2003) J. Mol. Biol. , vol.332 , pp. 415-422
    • Koning, R.1    Van Den Worm, S.2    Plaisier, J.R.3    Van Duin, J.4    Abrahams5    Koerten, H.J.P.6
  • 23
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein-structure refinement
    • R.A. Engh, and R. Huber Accurate bond and angle parameters for X-ray protein-structure refinement Acta Crystallog. sect. A 47 1991 392 400
    • (1991) Acta Crystallog. Sect. a , vol.47 , pp. 392-400
    • Engh1    Huber, R.R.A.2
  • 24
    • 1842480128 scopus 로고    scopus 로고
    • Two histidines of the coat protein of turnip yellow mosaic virus at the capsid interior are crucial for viability
    • H.H.J. Bink, S.K. Roepan, and C.W.A. Pleij Two histidines of the coat protein of turnip yellow mosaic virus at the capsid interior are crucial for viability Proteins: Struct. Funct. Genet. 55 2004 236 244
    • (2004) Proteins: Struct. Funct. Genet. , vol.55 , pp. 236-244
    • Bink, H.H.J.1    Roepan2    Pleij, C.W.A.S.K.3
  • 25
    • 0035194351 scopus 로고    scopus 로고
    • Virus particle explorer (VIPER), a website for virus capsid structures and their computational analyses
    • V.S. Reddy, P. Natarajan, B. Okerberg, K. Li, K.V. Damodaran, and R.T. Morton Virus particle explorer (VIPER), a website for virus capsid structures and their computational analyses J. Virol. 75 2001 11943 11947
    • (2001) J. Virol. , vol.75 , pp. 11943-11947
    • Reddy, V.S.1    Natarajan, P.2    Okerberg, B.3    Li, K.4    Damodaran5    Morton, R.T.K.V.6
  • 26
    • 0028984104 scopus 로고
    • Preliminary-X-ray diffraction analysis of crystals of turnip yellow mosaic-virus (TYMV)
    • M.A. Canady, J. Day, and A. McPherson Preliminary-X-ray diffraction analysis of crystals of turnip yellow mosaic-virus (TYMV) Proteins: Struct. Funct. Genet. 21 1995 78 81
    • (1995) Proteins: Struct. Funct. Genet. , vol.21 , pp. 78-81
    • Canady, M.A.1    Day2    McPherson, A.J.3
  • 27
    • 0027013697 scopus 로고
    • Turnip yellow mosaic-virus variants produced from DNA clones encoding their genomes
    • M.L. Skotnicki, A.M. Mackenzie, and A.J. Gibbs Turnip yellow mosaic-virus variants produced from DNA clones encoding their genomes Arch. Virol. 127 1992 25 35
    • (1992) Arch. Virol. , vol.127 , pp. 25-35
    • Skotnicki, M.L.1    MacKenzie2    Gibbs, A.J.A.M.3
  • 28
    • 0001708902 scopus 로고
    • Use of bentonite in purification of plant viruses
    • D.B. Dunn, and J.H. Hitchborn Use of bentonite in purification of plant viruses Virology 25 1965 171 192
    • (1965) Virology , vol.25 , pp. 171-192
    • Dunn1    Hitchborn, J.H.D.B.2
  • 29
    • 0019955792 scopus 로고
    • Properties of turnip yellow mosaic-virus in cesium-chloride solutions - The formation of high-density components
    • A. Noort, C.L.A.M. Vandendries, C.W.A. Pleij, E.M.J. Jaspars, and L. Bosch Properties of turnip yellow mosaic-virus in cesium-chloride solutions - the formation of high-density components Virology 120 1982 412 421
    • (1982) Virology , vol.120 , pp. 412-421
    • Noort, A.1    Vandendries, C.L.A.M.2    Pleij, C.W.A.3    Jaspars4    Bosch, L.E.M.J.5
  • 30
    • 0014772435 scopus 로고
    • Spermidine and spermine - Polyamine components of turnip yellow mosaic virus
    • S.V. Beer, and T. Kosuge Spermidine and spermine - polyamine components of turnip yellow mosaic virus Virology 40 1970 930 938
    • (1970) Virology , vol.40 , pp. 930-938
    • Beer1    Kosuge, T.S.V.2
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski1    Minor, W.Z.2
  • 32
    • 0000560808 scopus 로고    scopus 로고
    • MOLREP: An automated program for molecular replacement
    • A. Vagin, and A. Teplyakov MOLREP: an automated program for molecular replacement J. Appl. Crystallog. 30 1997 1022 1025
    • (1997) J. Appl. Crystallog. , vol.30 , pp. 1022-1025
    • Vagin1    Teplyakov, A.A.2
  • 34
    • 0032790081 scopus 로고    scopus 로고
    • XtalView Xfit - A versatile program for manipulating atomic coordinates and electron density
    • D.E. McRee XtalView Xfit - a versatile program for manipulating atomic coordinates and electron density J. Struct. Biol. 125 1999 156 165
    • (1999) J. Struct. Biol. , vol.125 , pp. 156-165
    • McRee, D.E.1


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