-
1
-
-
9144252016
-
The gene ontology annotation (GOA) database: sharing knowledge in uniprot with gene ontology
-
Camon E., Magrane M., Barrell D., Lee V., Dimmer E., Maslen J., Binns D., Harte N., Lopez R., and Apweiler R. The gene ontology annotation (GOA) database: sharing knowledge in uniprot with gene ontology. Nucl. Acids Res. 32 Database issue (2004) D262-D266
-
(2004)
Nucl. Acids Res.
, vol.32
, Issue.Database issue
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
2
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M., and Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucl. Acids Res. 28 1 (2000) 27-30
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.1
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
3
-
-
17244380380
-
A survey of current work in biomedical text mining
-
Cohen A.M., and Hersh W.R. A survey of current work in biomedical text mining. Brief Bioinf. 6 1 (2005) 57-71
-
(2005)
Brief Bioinf.
, vol.6
, Issue.1
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
5
-
-
0002284942
-
Identifying the interaction between genes and gene products based on frequently seen verbs in medline abstracts
-
Sekimizu T., Park H., and Tsujii J. Identifying the interaction between genes and gene products based on frequently seen verbs in medline abstracts. Genome Inf. Ser. Workshop Genome Inf. 9 (1998) 62-71
-
(1998)
Genome Inf. Ser. Workshop Genome Inf.
, vol.9
, pp. 62-71
-
-
Sekimizu, T.1
Park, H.2
Tsujii, J.3
-
6
-
-
0035236048
-
Genies: a natural-language processing system for the extraction of molecular pathways from journal articles
-
Friedman C., Kra P., Yu H., Krauthammer M., and Rzhetsky A. Genies: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17 Suppl. 1 (2001) S74-S82
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Friedman, C.1
Kra, P.2
Yu, H.3
Krauthammer, M.4
Rzhetsky, A.5
-
7
-
-
0038017587
-
Mining microarray expression data by literature profiling
-
Research0055
-
Chaussabel D., and Sher A. Mining microarray expression data by literature profiling. Genome Biol. 3 10 (2002) Research0055
-
(2002)
Genome Biol.
, vol.3
, Issue.10
-
-
Chaussabel, D.1
Sher, A.2
-
8
-
-
4844222294
-
Txtgate: profiling gene groups with text-based information
-
Glenisson P., Coessens B., Vooren S.V., Mathys J., Moreau Y., and Moor B.D. Txtgate: profiling gene groups with text-based information. Genome Biol. 5 6 (2004) R43
-
(2004)
Genome Biol.
, vol.5
, Issue.6
-
-
Glenisson, P.1
Coessens, B.2
Vooren, S.V.3
Mathys, J.4
Moreau, Y.5
Moor, B.D.6
-
9
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
Jenssen T.K., Laegreid A., Komorowski J., and Hovig E. A literature network of human genes for high-throughput analysis of gene expression. Nat. Genet. 28 1 (2001) 21-28
-
(2001)
Nat. Genet.
, vol.28
, Issue.1
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
10
-
-
0043163729
-
The computational analysis of scientific literature to define and recognize gene expression clusters
-
Raychaudhuri S., Chang J.T., Imam F., and Altman R.B. The computational analysis of scientific literature to define and recognize gene expression clusters. Nucl. Acids Res. 31 15 (2003) 4553-4560
-
(2003)
Nucl. Acids Res.
, vol.31
, Issue.15
, pp. 4553-4560
-
-
Raychaudhuri, S.1
Chang, J.T.2
Imam, F.3
Altman, R.B.4
-
11
-
-
0036358850
-
Predicting the sub-cellular location of proteins from text using support vector machines
-
Stapley B.J., Kelley L.A., and Sternberg M.J.E. Predicting the sub-cellular location of proteins from text using support vector machines. Pac. Symp. Biocomput. (2002) 374-385
-
(2002)
Pac. Symp. Biocomput.
, pp. 374-385
-
-
Stapley, B.J.1
Kelley, L.A.2
Sternberg, M.J.E.3
-
12
-
-
1542365353
-
Text mining: generating hypotheses from medline
-
Srinivasan P. Text mining: generating hypotheses from medline. JASIST 55 (2004) 396-413
-
(2004)
JASIST
, vol.55
, pp. 396-413
-
-
Srinivasan, P.1
-
13
-
-
0037545622
-
-
M. Weeber, R. Vos, H. Klein, L.T.W.D.J.-V.D. Berg, A.R. Aronson, G. Molema, Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide, J Am Med Inform Assoc 10 (3) (2003) 252-259.
-
M. Weeber, R. Vos, H. Klein, L.T.W.D.J.-V.D. Berg, A.R. Aronson, G. Molema, Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide, J Am Med Inform Assoc 10 (3) (2003) 252-259.
-
-
-
-
14
-
-
1342330525
-
Knowledge discovery by automated identification and ranking of implicit relationships
-
Wren J.D., Bekeredjian R., Stewart J.A., Shohet R.V., and Garner H.R. Knowledge discovery by automated identification and ranking of implicit relationships. Bioinformatics 20 3 (2004) 389-398
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 389-398
-
-
Wren, J.D.1
Bekeredjian, R.2
Stewart, J.A.3
Shohet, R.V.4
Garner, H.R.5
-
15
-
-
0036100170
-
Large-scale protein annotation through gene ontology
-
Xie H., Wasserman A., Levine Z., Novik A., Grebinskiy V., Shoshan A., and Mintz L. Large-scale protein annotation through gene ontology. Genome Res. 12 5 (2002) 785-794
-
(2002)
Genome Res.
, vol.12
, Issue.5
, pp. 785-794
-
-
Xie, H.1
Wasserman, A.2
Levine, Z.3
Novik, A.4
Grebinskiy, V.5
Shoshan, A.6
Mintz, L.7
-
16
-
-
15044341082
-
Integration of text- and data-mining using ontologies successfully selects disease gene candidates
-
Tiffin N., Kelso J.F., Powell A.R., Pan H., Bajic V.B., and Hide W.A. Integration of text- and data-mining using ontologies successfully selects disease gene candidates. Nucl. Acids Res. 33 5 (2005) 1544-1552
-
(2005)
Nucl. Acids Res.
, vol.33
, Issue.5
, pp. 1544-1552
-
-
Tiffin, N.1
Kelso, J.F.2
Powell, A.R.3
Pan, H.4
Bajic, V.B.5
Hide, W.A.6
-
17
-
-
33847004014
-
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
-
Jelier R., Jenster G., Dorssers L.C.J., Wouters B., Hendriksen P., Mons B., Delwel R., and Kors J.A. Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation. BMC Bioinf. 8 1 (2007) 14
-
(2007)
BMC Bioinf.
, vol.8
, Issue.1
, pp. 14
-
-
Jelier, R.1
Jenster, G.2
Dorssers, L.C.J.3
Wouters, B.4
Hendriksen, P.5
Mons, B.6
Delwel, R.7
Kors, J.A.8
-
18
-
-
25444530343
-
CoPub mapper: mining medline based on search term co-publication
-
Alako B.T.F., Veldhoven A., van Baal S., Jelier R., Verhoeven S., Rullmann T., Polman J., and Jenster G. CoPub mapper: mining medline based on search term co-publication. BMC Bioinf. 6 (2005) 51
-
(2005)
BMC Bioinf.
, vol.6
, pp. 51
-
-
Alako, B.T.F.1
Veldhoven, A.2
van Baal, S.3
Jelier, R.4
Verhoeven, S.5
Rullmann, T.6
Polman, J.7
Jenster, G.8
-
19
-
-
13244268327
-
Extending the mutual information measure to rank inferred literature relationships
-
Wren J. Extending the mutual information measure to rank inferred literature relationships. BMC Bioinf. 5 (2004) 145
-
(2004)
BMC Bioinf.
, vol.5
, pp. 145
-
-
Wren, J.1
-
20
-
-
85055298348
-
Accurate methods for the statistics of surprise and coincidence
-
Dunning T. Accurate methods for the statistics of surprise and coincidence. Comput. Stat. 19 (1993) 61-74
-
(1993)
Comput. Stat.
, vol.19
, pp. 61-74
-
-
Dunning, T.1
-
22
-
-
33947311528
-
An evaluation of go annotation retrieval for biocreative and GOA
-
Camon E.B., Barrell D.G., Dimmer E.C., Lee V., Magrane M., Maslen J., Binns D., and Apweiler R. An evaluation of go annotation retrieval for biocreative and GOA. BMC Bioinf. 6 Suppl. 1 (2005) S17
-
(2005)
BMC Bioinf.
, vol.6
, Issue.SUPPL. 1
-
-
Camon, E.B.1
Barrell, D.G.2
Dimmer, E.C.3
Lee, V.4
Magrane, M.5
Maslen, J.6
Binns, D.7
Apweiler, R.8
-
23
-
-
0036144742
-
Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
-
Raychaudhuri S., Chang J.T., Sutphin P.D., and Altman R.B. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res. 12 1 (2002) 203-214
-
(2002)
Genome Res.
, vol.12
, Issue.1
, pp. 203-214
-
-
Raychaudhuri, S.1
Chang, J.T.2
Sutphin, P.D.3
Altman, R.B.4
-
24
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The gene ontology consortium
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., and Sherlock G. Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat. Genet. 25 1 (2000) 25-29
-
(2000)
Nat. Genet.
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
26
-
-
0345863927
-
The unified medical language system (UMLS): integrating biomedical terminology
-
Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucl. Acids Res. 32 Database issue (2004) D267-D270
-
(2004)
Nucl. Acids Res.
, vol.32
, Issue.Database issue
-
-
Bodenreider, O.1
-
28
-
-
41149135021
-
-
A.R. Aronson, Filtering the UMLS metathesaurus for metamap, Technical report, National Library of Medicine, 2004.
-
A.R. Aronson, Filtering the UMLS metathesaurus for metamap, Technical report, National Library of Medicine, 2004.
-
-
-
-
29
-
-
34248198854
-
-
M.J. Schuemie, B. Mons, M. Weeber, J.A. Kors, Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification, J. Biomed. Inf. 40 (3) (2007) 316-324, http://dx.doi.org/10.1016/j.jbi.2006.09.002
-
M.J. Schuemie, B. Mons, M. Weeber, J.A. Kors, Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification, J. Biomed. Inf. 40 (3) (2007) 316-324, http://dx.doi.org/10.1016/j.jbi.2006.09.002
-
-
-
-
30
-
-
0013438885
-
Experiments with representation in a document retrieval system
-
Croft W. Experiments with representation in a document retrieval system. Inf. Technol.: Res. Dev. 2 (1983) 1-21
-
(1983)
Inf. Technol.: Res. Dev.
, vol.2
, pp. 1-21
-
-
Croft, W.1
-
31
-
-
0029989103
-
An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts
-
Wilbur W.J., and Yang Y. An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts. Comput. Biol. Med. 26 3 (1996) 209-222
-
(1996)
Comput. Biol. Med.
, vol.26
, Issue.3
, pp. 209-222
-
-
Wilbur, W.J.1
Yang, Y.2
-
34
-
-
0003882234
-
-
Addison-Wesley, Reading, MA
-
Salton G. Automatic Text Processing: The Transformation, Analysis, and Retrieval of Information by Computer (1989), Addison-Wesley, Reading, MA
-
(1989)
Automatic Text Processing: The Transformation, Analysis, and Retrieval of Information by Computer
-
-
Salton, G.1
-
35
-
-
0023890867
-
Measuring the accuracy of diagnostic systems
-
Swets J.A. Measuring the accuracy of diagnostic systems. Science 240 4857 (1988) 1285-1293
-
(1988)
Science
, vol.240
, Issue.4857
, pp. 1285-1293
-
-
Swets, J.A.1
-
36
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
Hanley J.A., and McNeil B.J. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143 1 (1982) 29-36
-
(1982)
Radiology
, vol.143
, Issue.1
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
37
-
-
18744403058
-
Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes
-
Jelier R., Jenster G., Dorssers L.C.J., van der Eijk C.C., van Mulligen E.M., Mons B., and Kors J.A. Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes. Bioinformatics 21 9 (2005) 2049-2058
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2049-2058
-
-
Jelier, R.1
Jenster, G.2
Dorssers, L.C.J.3
van der Eijk, C.C.4
van Mulligen, E.M.5
Mons, B.6
Kors, J.A.7
|