Phylogenetic evidence against evolutionary stasis and natural abiotic reservoirs of influenza A virus

Journal of Virology

Volumn 82, Issue 7, 2008, Pages 3769-3774

  Worobey, Michael ^a  

^a University of Arizona   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; ARTIFACT; ASIAN INFLUENZA; GENE SEQUENCE; INFLUENZA VIRUS A; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RESERVOIR; RNA SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE; VIRAL CONTAMINATION; VIRUS GENE; VIRUS HEMAGGLUTINATION; VIRUS ISOLATION; VIRUS STRAIN;

ANIMALS; DISEASE RESERVOIRS; HUMANS; INFLUENZA A VIRUS; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SIBERIA; WATER MICROBIOLOGY;

ANSER; AVIAN INFLUENZA VIRUS; HUMAN INFLUENZA VIRUS; INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

EID: 41149146470     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.02207-07     Document Type: Article

References (23)

1. Anchlan, D., S. Ludwig, P. Nymadawa, J. Mendsaikhan, and C. Scholtissek. 1996. Previous H1N1 influenza A viruses circulating in the Mongolian population. Arch. Virol. 141:1553-1569.
2. Bikour, M. H., E. H. Frost, S. Deslandes, B. Talbot, and Y. Elazhary. 1995. Persistence of a 1930 swine influenza A (H1N1) virus in Quebec. J. Gen. Virol. 76:2539-2547.
3. Castello, J. D., S. O. Rogers, W. T. Starmer, C. M. Catranis, L. Ma, G. D. Bachand, Y. Zhao, and J. E. Smith. 1999. Detection of tomato mosaic tobamovirus RNA in ancient glacial ice. Polar Biol. 22:207-212.
4. Chen, R., and E. C. Holmes. 2006. Avian influenza virus exhibits rapid evolutionary dynamics. Mol. Biol. Evol. 23:2336-2341.
5. Cooper, A., and H. N. Poinar. 2000. Ancient DNA: do it right or not at all. Science 289:1139.
6. Corbitt, G., A. S. Bailey, and G. Williams. 1990. HIV infection in Manchester, 1959. Lancet 336:51.
7. Dem'ianenko, I. V., A. A. Shilov, Z. K. Chuvakova, O. V. Chaika, and E. I. Isaeva. 1988. Comparative characteristics of hemagglutinins of influenza viruses with antigenic structure Hsw1N1 isolated from man and animals. Vopr. Virosol. 33:157-162. (In Russian.)
8. Enserink, M. 2005. Pig flu scare - case closed? Science 308:339c.
9. Evans, D. G. 1966. Wilson Smith: 1987-1965. Biographical memoirs of the Fellows of the Royal Society. 12:478-487.
10. Fanning, T. G., R. D. Slemons, A. H. Reid, T. A. Janczewski, J. Dean, and J. K. Taubenberger. 2002. 1917 avian influenza virus sequences suggest that the 1918 pandemic virus did not acquire its hemagglutinin directly from birds. J. Virol. 76:7860-7862.
11. Gilbert. M. T. P., H.-J. Bandelt, M. Hofreiter, and I. Barnes. 2005. Assessing ancient DNA studies. Trends Ecol. Evol. 20:541-544.
12. Gilbert, M. T. P., T. Haselkorn, M. Bunce, J. J. Sanchez, S. B. Lucas, L. D. Jewell, E. Van Marck, and M. Worobey. 2007. The isolation of nucleic acids from fixed, paraffin-embedded tissues: which methods are useful when? PLoS ONE 2:e537.
13. Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogeny (version 3.1). Bioinformatics 17:754-755.
14. Nakajima, K., U. Desselberger, and P. Palese. 1978. Recent human influenza A (H1N1) viruses are closely related genetically to strains isolated in 1950. Nature 274:334-339.
15. Palese, P. 2004. Influenza: old and new threats. Nat. Med. 10:S82-S87.
16. Swofford, D. L. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer Associates, Sunderland, MA.
17. Wain-Hobson, S., J.-P. Vartanian, M. Henry, N. Chenciner, R. Cheynier, S. Delassus, L. Pedrosa Martins, M. Sala, M.-T. Nugeyre, D. Guetard, D. Klatzman, J.-C. Gluckman, W. Rozenbaum, F. Barre-Sinoussi, and L. Montagnier. 1991. LAV revisited: origins of the early HIV-1 isolates from Institut Pasteur. Science 252:961-965.
18. Worobey, M., A. Rambaut, O. G. Pybus, and D. L. Robertson. 2002. Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus. Science 296:211a.
19. Yamnikova, S. S., J. Mandler, Z. H. Bekh-Ochir, P. Dachtzeren, S. Ludwig, D. K. Lvov, and C. Scholtissek. 1993. A reassortant H1N1 influenza virus caused fatal epizootics among camels in Mongolia. Virology 197:558-563.
20. Zhang, G., D. Shoham, D. Gilichinsky, S. Davydov, J. D. Castello, and S. O. Rogers. 2006. Evidence of influenza A virus RNA in Siberian lake ice. J. Virol. 80:12229-12235.
21. Zhang, G., D. Shoham, D. Gilichinsky, S. Davydov, J. D. Castello, and S. O. Rogers. 2007. Evidence of influenza A virus RNA in Siberian lake ice (erratum). J. Virol. 81:2538.
22. Zhu, T., and D. D. Ho. 1995. Was HIV present in 1959? Nature 374:503-504.
23. Zhu, T., B. T. Korber, A. J. Nahmias, E. Hooper, P. M. Sharp, and D. D. Ho. 1998. An African HIV-1 sequence from 1959 and implications for the origin of the epidemic. Nature 391:594-597.