First radiation hybrid map of the river buffalo X chromosome (BBUX) and comparison with BTAX

Animal Genetics

Volumn 39, Issue 2, 2008, Pages 196-200

  Ianella, P ^a   Venancio, L P R ^a   Stafuzza, N B ^a   Miziara, M N ^a   Agarwala, R ^b   Schaffer A A ^b   Riggs, P K ^c   Womack, J E ^d   Amaral, M E J ^a,d  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c TEXAS A AND M UNIVERSITY   (United States)

^d TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Radiation hybrid mapping; River buffalo; X chromosome

Indexed keywords

ANIMAL; ARTICLE; BUFFALO; CHROMOSOME; CONSENSUS SEQUENCE; EXPRESSED SEQUENCE TAG; GENE FREQUENCY; GENETIC MARKER; GENETICS; RADIATION HYBRID MAPPING; X CHROMOSOME;

ANIMALS; BUFFALOES; CHROMOSOMES, MAMMALIAN; CONSENSUS SEQUENCE; EXPRESSED SEQUENCE TAGS; GENE FREQUENCY; GENETIC MARKERS; RADIATION HYBRID MAPPING; X CHROMOSOME;

BOS; BOS TAURUS; BOVINAE; BUBALUS BUBALIS;

EID: 41149086787     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2007.01696.x     Document Type: Article

References (19)

1. Amaral M.E.J., Kata S.R. Womack J.E. (2002) A radiation hybrid map of bovine X chromosome (BTAX). Mammalian Genome 13, 268 71.
2. Amaral M.E.J., Owens K.E., Elliott J.S. et al. (2007) Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10. Animal Genetics 38, 311 4.
3. Applegate D., Bixby R., Chvátal V. Cook W. (2006) The Traveling Salesman Problem: A Computational Study. Princeton University Press, Princeton, NJ, USA.
4. Everts-van der Wind A., Kata S.R., Band M.R. et al. (2004) A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Research 14, 1424 37.
5. Hassanane M.S., Chaudhary R. Chowdhary B.P. (1998) Microdissected bovine X chromosome segment delineates homoeologous chromosomal regions in sheep, goat and buffalo. Chromosome Research 6, 213 7.
6. Iannuzzi L. (1994) Standard karyotype of the river buffalo (Bubalus bubalis L., 2n = 50). Report of the committee for the standardization of banded karyotypes of the river buffalo. Cytogenetics and Cell Genetics 67, 102 13.
7. Iannuzzi L. Di Meo G.P. (1995) Chromosomal evolution in bovids: a comparison of cattle, sheep and goat G and R-banded chromosomes and cytogenetics divergences among cattle, goat and river buffalo sex chromosome. Chromosome Research 3, 291 9.
8. Iannuzzi L., Di Meo G.P., Perucatti A. et al. (2000) Comparative FISH mapping of the bovid X chromosomes reveals homologies and divergences between the subfamilies Bovinae and Caprinae. Cytogenetics and Cell Genetics 89, 171 6.
9. Iannuzzi L., Di Meo G.P., Perucatti A. et al. (2003) The river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 64 loci by fluorescence in situ hybridization and R-banding. Cytogenetic and Genome Research 102, 65 75.
10. Ihara N., Takasuga A., Mizoshita K. et al. (2004) A comprehensive genetic map of the cattle genome based on 3802 microsatellites. Genome Research 14, 1987 98.
11. Jann O.C., Aerts J., Jones M. et al. (2006) A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. BMC Genomics 7, 283.
12. Marques E., de Givry S., Stothard P. et al. (2007) A high-resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics 8, 254.
13. Miziara M.N., Goldammer T., Stafuzza N.B. et al. (2007) Generation of a radiation hybrid map of river buffalo (Bubalus bubalis) chromosome one (BBU1). Cytogenetic and Genome Research 119, 100 4.
14. Ponce de León F.A., Ambady S., Hawkins G.A. et al. (1996) Development of a bovine X chromosome linkage group and painting probes to assess cattle, sheep and goat X chromosome segment homologies. Proceedings of the National Academy of Sciences of the United States of America 93, 3450 4.
15. Prakash B., Olsaker I., Gustavsson I. Chowdhary B.P. (1997) FISH mapping of three bovine cosmids to cattle, goat, sheep and buffalo X chromosomes. Heriditas 126, 115 9.
16. Schäffer A.A., Rice E.S., Cook W. Agarwala R. (2007) rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. Bioinformatics 23, 1156 8.
17. Stafuzza N.B., Ianella P., Miziara M.N. et al. (2007) Preliminary radiation hybrid map for river buffalo chromosome 6 and comparison to bovine chromosome 3. Animal Genetics 38, 406 9.
18. Vaiman D., Mercier D., Moazami-Goudarzi K. et al. (1994) A set of 99 cattle microsatellites: characterization, synteny mapping and polymorphism. Mammalian Genome 5, 288 97.
19. Yeh C.C., Taylor J.F., Gallagher D.S. et al. (1996) Genetic and physical mapping of the bovine X chromosome. Genomics 32, 245 52.