Identification of near-isogenic lines: An innovative approach, validated for root and shoot morphological characters in a mapping population of rice (Oryza sativa L.)

Euphytica

Volumn 160, Issue 3, 2008, Pages 357-368

  Prabuddha, H R ^a   Manjunatha, K ^a   Venuprasad, R ^a   Vinod, M S ^a   Jureifa, J H ^a   Shashidhar, H E ^a  

^a UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

Author keywords

Candidate gene; Drought resistance; Mapping population; Near isogenic lines; Oryza sativa L.

Indexed keywords

ORYZA SATIVA;

EID: 41049102529     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-007-9546-8     Document Type: Article

References (21)

1. Adnan K, Shashidhar HE, Hittalmani S (2002) Mapping of QTL associated with root and related traits in DH mapping population of rice (Oryza sativa L.). Indian J Genet Plant Br 62:287-290
2. Allard RW (1960) Principles of plant breeding. John Wiley, New York
3. Ashikari M, Matsuoka M (2002) Application of rice genomics to plant biology and breeding. Bot Bull Acad Sin 43:1-11
4. Barloo RV (1997) GGT: Graphical GenoTyping, Version 32. Wageningen University and research centre, Netherlands
5. Hemamalini GS, Shashidhar HE, Hittalmani S (2000) Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimes at peak vegetative stage in rice (Oryza sativa L.). Euphytica 112:69-78
6. Kamoshita A, Zhang J, Siopongco J, Sarkarung S, Nguyen HT, Wade LJ (2002) Effects of phenotyping environment on identification of QTL for rice root morphology under anaerobic conditions. Crop Science 42:255-265
7. Li Z, Shen LS, Courtois B, Lafitte R (1999) Development of near-isogenic introgression lines (NIIL) sets for QTLs associated with drought tolerance in rice in: workshop on molecular approaches for the genetic improvement of cereals for stable production in water limited environments. CIMMYT, Mexico
8. Muehlbauer GJ, Specht JE, Compton MA, Staswick PE, Bernard RL (1988) Near-isogenic lines-A potential resource in the integration of conventional and molecular marker linkage maps. Crop Science 28:729-735
9. Pflieger S, Lefebvre V, Causse M (2001) The candidate gene approach in plant genetics: a review. Molecular Breeding 7:275-291
10. Sharma N, Shashidhar HE, Hittalmani S (2003) Root length specific SCAR marker in rice (Oryza sativa L.). Rice Genet Newsl 19:47-48
11. Shashidhar HE, Sharma N, Venuprasad R, Toorchi M, Hittalmani S (2000) Identification of traits and molecular markers associated with components of drought resistance in rainfed lowland rice (Oryza sativa L.). In: International rice genetics symposium. IRRI, Los Banos, Philippines
12. Shen L, Courtois B, McNally KL, Robin S, Li Z (2001) Evaluation of near-isogenic lines for root depth through marker-aided selection. Theor Appl Genet 103:75-83
13. Sunderraj N, Nagaraju S, Ramu MNV, Jagannath MK (1972) Designs and analysis of field experiments. University of Agricultural Sciences, Hebbal, Bangalore
14. Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from un-adapted germplasm into elite breeding lines. Theor Appl Genet 92:191-203
15. Tuinstra MR, Ejeta G, Goldsbrough P (1997) Heterogeneous inbred family (HIF) analysis, a method for developing near-isogenic lines that differ at quantitative trait loci. Theor Appl Genet 95(5-6):1005-1011
16. Tuinstra MR, Ejeta G, Goldsbrough P (1998) Evaluation of near-isogenic lines contrasting for QTL markers associated with drought tolerance. Crop Science 38:835-842
17. Toorchi M, Shashidhar HE, Hittalmani S, Gireesha TM (2002) Rice root morphology under contrasting moisture regimes and contribution of molecular marker heterozygosity. Euphytica 126(2):251-267
18. Vinod MS, Sharma N, Manjunatha K, Adnan K, Prakash NB, Shashidhar HE (2006) Candidate genes for drought tolerance and improved productivity in rice (Oryza sativa L.). J Biosci 31(1):69-74
19. Wang D, Zhu J, Li Z, Paterson AH (1999) QTL Mapper version 1.0: a computer software for mapping quantitative trait loci with main effects, epistatic effects and QTL × environment interactions. Zhejiang University, China
20. Wolfe MS (1985) The current status and prospects of multi-line cultivars and variety mixtures for disease resistance. Annu Rev Phytopathol 23:251-273
21. Zhang J, Zheng HG, Aarti A, Pantuwan G, Nguyen TT, Tripathy JN, Sarial AK, Robin S, Babu RC, Sarkarung S, Blum A, Nguyen HT (2001) Locating genomic regions associated with components of drought resistance in rice: comparing mapping within and across species. Theor Appl Genet 103:19-29